You can disable whole classes of algorithms on the command line with the LTC_NO_* defines. From there you can manually turn on what you want to enable.
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The following build with GCC 3.4.3 on an AMD64 box gets you AES, CTR mode, SHA-256, HMAC, Yarrow, full RSA PKCS #1, PKCS #5, ASN.1 DER and MPI in