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  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2013-12-28 17:17:25 UTC
  • mto: This revision was merged to the branch mainline in revision 5.
  • Revision ID: package-import@ubuntu.com-20131228171725-i8u6il75mzakjy43
Tags: upstream-2.4.1
Import upstream version 2.4.1

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man/csDendro.Rd
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Creates a grid graphics plot of a dendrogram of Jensen-Shannon distances between conditions of a CuffFeatureSet or CuffGeneSet object.
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}
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\usage{
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\S4method{csDendro}{CuffFeatureSet}(object,logMode=T,pseudocount=1)
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\S4method{csDendro}{CuffData}(object,logMode=T,pseudocount=1)
 
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\S4method{csDendro}{CuffFeatureSet}(object,logMode=T,pseudocount=1,replicates=FALSE)
 
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\S4method{csDendro}{CuffData}(object,logMode=T,pseudocount=1,replicates=FALSE,...)
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}
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\arguments{
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  \item{pseudocount}{
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Value to be added to FPKM for appropriate log transformation and clustering. (Avoids zero-based errors)
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}
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  \item{replicates}{
 
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A logical value whether or not to plot individual replicates or aggregate condition values.
 
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}
 
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  \item{\dots}{
 
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Additional arguments to csHeatmap
 
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}
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}
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\details{
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None