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bioperl (1.6.901-2) unstable; urgency=low
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* debian/source/format: 3.0 (quilt)
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-- Andreas Tille <tille@debian.org> Wed, 14 Dec 2011 09:04:08 +0100
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bioperl (1.6.901-1) unstable; urgency=low
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* New upstream release.
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* Point debian/watch to search.cpan.org.
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* Build using dh and overrides:
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- Use Debhelper 8 (debian/rules, debian/control).
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- Simplified debian/rules.
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* Split into libbio-perl-perl, as discussed with the Debian Perl team.
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(debian/control, debian/bioperl.install, debian libbio-perl-perl.install)
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- Incremented Standards-Version to reflect conformance with Policy 3.9.2.
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No other changes needed.
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- Vcs-Browser URL made redirectable to viewvc.
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- Removed useless ‘svn’ in the Vcs-Svn URL.
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-- Charles Plessy <plessy@debian.org> Fri, 17 Jun 2011 13:51:18 +0900
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bioperl (1.6.1-2) unstable; urgency=low
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* Removed bibliographic information from the long description
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* Incremented Standards-Version to reflect conformance with Policy 3.8.4
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(debian/control, no changes needed).
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* Build-depends on libxml-sax-expatxs-perl to avoid downloading DTDs during
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the tests and therefore fail when network is not available
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(debian/control, Closes: #562442).
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* Depend on the ${misc:Depends} substvar (debian/control).
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-- Charles Plessy <plessy@debian.org> Fri, 26 Feb 2010 23:52:23 +0900
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bioperl (1.6.1-1) unstable; urgency=low
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* New upstream release with new features and many corrections in the
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test suite (Closes: #533976).
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* debian/rules: trigger network tests with DEB_MAINTAINER_MODE.
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- Build-depend on perl-modules >= 5.10.1 to have ExtUtils::Manifest 1.52 or
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higher, and on libtest-pod-perl.
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- Added liblist-moreutils-perl, libspreadsheet-writeexcel-perl,
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libsvg-perl, and libxml-simple-perl, libdbd-pg-perl, libdbd-mysql-perl,
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libdbd-sqlite3-perl to build and package dependencies (needed by some
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components of Bioperl, and therefore for the tests).
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-- Charles Plessy <plessy@debian.org> Wed, 30 Sep 2009 18:56:42 +0900
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bioperl (1.6.0-3) unstable; urgency=low
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* Removed myself from Uploaders
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- Added libdata-stag-perl in bioperl’s Depends field, since it is
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- Added libxml-simple-perl in bioperl’s Recommends and Build-Depends
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fields, since they are listed in DEPENDENCIES.
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- Incremented Standards-Version to reflect conformance with Policy 3.8.3
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* Collected some informations in debian/upstream-metadata.yaml.
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-- Charles Plessy <plessy@debian.org> Fri, 18 Sep 2009 20:23:51 +0900
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bioperl (1.6.0-2) unstable; urgency=low
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* Removed patch system (not used):
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- removed instructions in debian/rules;
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- removed quilt from Build-Depends in debian/control.
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- uncommented test command in debian/rules;
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- uncommented previously missing build-dependencies in debian/control.
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- Re-enabled tests and uncommented build-dependencies accordingly.
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* Removed libmodule-build-perl and libtest-harness-perl from
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Build-Depends-Indep (provided by perl-modules).
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* Better cleaning of empty directories using find -type d -empty -delete
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instead of rmdir in debian/rules (LP: #324001).
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-- Charles Plessy <plessy@debian.org> Tue, 10 Mar 2009 07:19:11 +0100
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bioperl (1.6.0-1) experimental; urgency=low
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- Updated dependencies according to the new upstream release.
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- Added the CPAN dependencies of BioPerl to Build-Depends-Indep in order to
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run the tests at build time.
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- Added bioperl-run to the recommended packages.
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- Updated my email address.
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- Uses Debhelper 7 (debian/compat modified accordingly).
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* debian/patches: removed as not needed (no downloads by default).
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- Uses Build.PL instead of Makefile.PL.
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- Tests disabled for the experimental upload: not all dependencies are
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* debian/README.{Debian,source}: removed as not needed anymore
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* debian/watch: BioPerl is now mixed case.
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* New upstream stable release:
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- fixes Bio::AlignIO::next_aln bug (Closes: #266921).
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- New modules, deprecated modules,… please consult Upstream documents in
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/usr/share/doc/bioperl.
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- fields values rewrapped to easily spot diffs in commit mails
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- dropped B-D-I versioning on perl, since Etch already has a greater
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- Standards-Version bumped to 3.8.0 (no changes needed).
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-- Charles Plessy <plessy@debian.org> Mon, 26 Jan 2009 12:58:28 +0900
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bioperl (1.5.2.102-3) unstable; urgency=low
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- Removed MIA Matt Hope (dopey) from the Uploaders field.
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Thank you for your work, Matt. I hope you are doing well.
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- Downgraded some recommended package to the 'Suggests' priority,
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according to the following discussion on Upstream's mail list.
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http://bioperl.org/pipermail/bioperl-l/2008-March/027379.html
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* debian/copyright converted to machine-readable format.
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-- Charles Plessy <charles-debian-nospam@plessy.org> Tue, 18 Mar 2008 14:44:57 +0900
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bioperl (1.5.2.102-2) unstable; urgency=low
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* Added reference to libsvg-graph-perl (Closes: #342475).
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[ Nelson A. de Oliveira ]
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- Removed the XS- prefix from Vcs-Browser and Vcs-Svn
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- Moved debhelper and quilt from Build-Depends-Indep to Build-Depends
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* Updated debian/copyright
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- updated Recommends (libpostscript-textblock-perl won't exist -
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the package will be named libpostscript-perl)
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- fields wrapped at around 80 columns
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- added myself to Uploaders
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- added libio-string-perl to Build-Depends-Indep (Closes: #453923)
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- removed XS- from DM-Upload-Allowed
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- fixing incorrect first line (leading tab)
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* debian/rules updated
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* debian/dirs removed (passing arguments to dh_installdirs directly)
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-- David Paleino <d.paleino@gmail.com> Wed, 06 Feb 2008 12:01:15 +0100
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bioperl (1.5.2.102-1) unstable; urgency=low
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* Upgraded source package to debhelper 5 and standards-version 3.7.2.
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* Added libmodule-build-perl and libtest-harness-perl to
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* Disabled automatic CPAN download.
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* Using quilt instead of .diff.gz to manage modifications.
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* Updated Recommends list for the binary package.
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* Moved the "production-quality" scripts to /usr/bin/.
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* New maintainer: Debian-Med packaging team mailing list.
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* New uploaders: Charles Plessy and Steffen Moeller.
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* Updated Depends, Recommends and Suggests.
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* Imported in Debian-Med's SVN repository on Alioth.
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* Executing the regression tests during package building.
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* Moved the Homepage: field out from the package's description.
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* Updated watch file.
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-- Charles Plessy <charles-debian-nospam@plessy.org> Fri, 21 Sep 2007 22:52:22 +0900
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bioperl (1.4-1) unstable; urgency=low
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* New upstream release
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* Examples and working code are installed by default to usr/bin,
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this has been moved to usr/share/doc/bioperl/bin
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-- Matt Hope <matth@bioinformatics.unsw.edu.au> Sun, 18 Apr 2004 14:24:11 +1000
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bioperl (1.2.1-2) unstable; urgency=low
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* Updated dependencies to libgd-gd2-perl
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* Same maintainer, different email address
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-- Matt Hope <matth@bioinformatics.unsw.edu.au> Mon, 30 Jun 2003 23:40:59 +1000
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bioperl (1.2.1-1) unstable; urgency=low
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* New upstream release
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* Added more Depends/Recommends.
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* Added Depend: libio-string-perl
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-- Matt Hope <dopey@debian.org> Sat, 3 May 2003 01:21:54 +1000
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bioperl (1.2-1) unstable; urgency=low
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* New upstream release
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-- Matt Hope <dopey@debian.org> Fri, 25 Apr 2003 12:30:10 +1000
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bioperl (1.0.2-1) unstable; urgency=low
210
* *Another* new upstream release.
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-- Matt Hope <dopey@debian.org> Wed, 17 Jul 2002 09:58:09 +1000
214
bioperl (1.0.1-1) unstable; urgency=low
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* New upstream release
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-- Matt Hope <dopey@debian.org> Sat, 29 Jun 2002 22:35:08 +1000
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bioperl (1.0-1) unstable; urgency=low
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* New upstream release
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-- Matt Hope <dopey@debian.org> Wed, 20 Mar 2002 01:16:30 +1100
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bioperl (0.7.2-1) unstable; urgency=low
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* New upstream release.
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* Adopted by new maintainer; closes: #100208
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* Fixed lintian errors.
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-- Matt Hope <dopey@quickstix.com.au> Thu, 22 Nov 2001 19:31:26 +1100
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bioperl (0.7.1-1) unstable; urgency=low
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* Maintainer set to Debian QA Group <packages@qa.debian.org>.
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* New upstream release.
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-- Adrian Bunk <bunk@fs.tum.de> Fri, 24 Aug 2001 20:47:57 +0200
241
bioperl (0.7.0-1) unstable; urgency=low
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* New upstream release; closes: #44245
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-- Dr. Guenter Bechly <gbechly@debian.org> Sat, 5 May 2001 18:35:44 +0200
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bioperl (0.05.1-3) unstable; urgency=low
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* Fixed compliance with perl policy; closes: #95880, #95418
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-- Dr. Guenter Bechly <gbechly@debian.org> Tue, 1 May 2001 08:13:09 +0200
253
bioperl (0.05.1-2) unstable; urgency=low
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* Adopted by new maintainer; closes: #92806
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* Updated to latest standards version and added Build-Depends (changed
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control, copyright, dirs, docs, and rules);
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closes: #70154, #91121, #91397
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* Fixed some lintian errors in rules.
260
* Moved package to section non-free/science, because it is a tool that
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is exclusively useful for molecular biologists.
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-- Dr. Guenter Bechly <gbechly@debian.org> Fri, 20 Apr 2001 19:48:05 +0200
265
bioperl (0.05.1-1) unstable; urgency=low
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* Complies with the new Perl policy. Closes #40564
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* New upstream release
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-- Stephane Bortzmeyer <bortzmeyer@debian.org> Wed, 7 Jul 1999 14:49:16 +0200
272
bioperl (0.05-1) unstable; urgency=low
276
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Wed, 19 May 1999 11:35:30 +0200