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Viewing changes to src/binary_io.h

Committer: Bazaar Package Importer
Author(s): Michael Banck
Date: 2002-02-01 01:19:44 UTC
Revision ID: james.westby@ubuntu.com-20020201011944-4a9guzcsnpezzawx

Tags: upstream-1.99

Import upstream version 1.99

files added:

AUTHORS

COPYING

ChangeLog

INSTALL

Makefile.in

README

THANKS

config.guess

config.sub

configure

configure.in

doc/FAQ

doc/Migration

doc/Primer.html

doc/babel.1

install-sh

ltconfig

ltmain.sh

missing

mkinstalldirs

src/Makefile

src/Makefile.in

src/StdAfx.cpp

src/StdAfx.h

src/Vector.cpp

src/Vector.h

src/alchemy.cpp

src/amber.cpp

src/aromatic.h

src/aromatic.txt

src/atom.cpp

src/atomtyp.h

src/atomtyp.txt

src/balst.cpp

src/base.cpp

src/base.h

src/bgf.cpp

src/bin2hex.pl

src/binary.cpp

src/binary.h

src/binary_io.cpp

src/binary_io.h

src/bitgrid.cpp

src/bitgrid.h

src/bitvec.cpp

src/bitvec.h

src/bond.cpp

src/box.cpp

src/c3d.cpp

src/cacao.cpp

src/cache.cpp

src/car.cpp

src/ccc.cpp

src/chains.cpp

src/chains.h

src/chdrw.cpp

src/chiral.cpp

src/chiral.h

src/commandline.cpp

src/commandline.h

src/csr.cpp

src/cssr.cpp

src/ctransform.cpp

src/ctransform.h

src/cwrap.cpp

src/cwrap.h

src/data.cpp

src/data.h

src/dmol.cpp

src/element.h

src/element.txt

src/extable.h

src/extable.txt

src/feat.cpp

src/fh.cpp

src/fileformat.cpp

src/fileformat.h

src/gamess.cpp

src/gaussian.cpp

src/generic.cpp

src/generic.h

src/ghemical.cpp

src/grid.cpp

src/grid.h

src/gromos96.cpp

src/hin.cpp

src/jaguar.cpp

src/main.cpp

src/matrix.cpp

src/matrix.h

src/mdl.cpp

src/mmod.cpp

src/mol.cpp

src/mol.h

src/mol2.cpp

src/molchrg.cpp

src/molchrg.h

src/molvector.cpp

src/molvector.h

src/mopac.cpp

src/mpqc.cpp

src/nwchem.cpp

src/obifstream.h

src/oblib.dsp

src/oblib.dsw

src/obutil.cpp

src/obutil.h

src/parsmart.cpp

src/parsmart.h

src/parsmi.cpp

src/patty.cpp

src/patty.h

src/pdb.cpp

src/phmodel.cpp

src/phmodel.h

src/phmodel.txt

src/phmodeldata.h

src/qchem.cpp

src/quat.c

src/rand.cpp

src/report.cpp

src/resdata.h

src/resdata.txt

src/ring.cpp

src/ring.h

src/rotor.cpp

src/rotor.h

src/smarts.cpp

src/smarts.h

src/smi.cpp

src/smi.h

src/tinker.cpp

src/tokenst.cpp

src/typer.cpp

src/typer.h

src/types.h

src/types.txt

src/unichem.cpp

src/version.h.in

src/xed.cpp

src/xyz.cpp

stamp-h.in

stamp.h

test

test/Makefile

test/Makefile.in

test/attype.00.smi

test/main.cpp

test/ringresults.txt

test/ringtest.cpp

test/smartsresults.txt

test/smartstest.cpp

test/smartstest.txt

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src/binary_io.h

#ifndef OB_IO_BINARY_INCLUDED

#define OB_IO_BINARY_INCLUDED

#ifdef WIN32

#pragma warning (disable : 4786)

#endif

#include <vector>

#include <string>

#ifndef __sgi

#include <iostream>

#else

#include <iostream.h>

#endif

using namespace std;

namespace OpenBabel {

/* generic binary readers for basic data types */

unsigned int OB_io_read_binary(char *ccc, char *x, unsigned int size, unsigned int count);

unsigned int OB_io_read_binary(istream &, char *x, unsigned int size, unsigned int count);

/* generic binary writers for basic data types */

unsigned int OB_io_write_binary(char *ccc, const char *x, unsigned int size, unsigned int count);

unsigned int OB_io_write_binary(ostream &, const char *x, unsigned int size, unsigned int count);

/* binary readers for STL strings */

unsigned int OB_io_read_binary(char* ccc, string& str);

unsigned int OB_io_read_binary(istream& ifs, string& str);

/* binary writers for STL strings */

unsigned int OB_io_write_binary(char* ccc, const string& str);

unsigned int OB_io_write_binary(ostream& ofs, const string& str);

/* binary writers for compressed data */

unsigned int OB_io_write_binary_compressed(char*ccc, unsigned int *x, unsigned int bits, unsigned int Nvalues); //Writes 1+(bits*Nvalues)/8 bytes

unsigned int OB_io_write_binary_compressed(ostream&, unsigned int *x, unsigned int bits, unsigned int Nvalues); //Writes 1+(bits*Nvalues)/8 bytes

unsigned int OB_io_write_binary_compressed(char*ccc, float *x, unsigned int bits, unsigned int Nvalues); //Writes 9+(bits*Nvalues)/8 bytes

unsigned int OB_io_write_binary_compressed(ostream&, float *x, unsigned int bits, unsigned int Nvalues); //Writes 9+(bits*Nvalues)/8 bytes

/* binary readers for compressed data */

unsigned int OB_io_read_binary_compressed(char*ccc, unsigned int *x, unsigned int bits, unsigned int Nvalues); //Reads 1+(bits*Nvalues)/8 bytes

unsigned int OB_io_read_binary_compressed(istream&, unsigned int *x, unsigned int bits, unsigned int Nvalues); //Reads 1+(bits*Nvalues)/8 bytes

unsigned int OB_io_read_binary_compressed(char*ccc, float *x, unsigned int bits, unsigned int Nvalues); //Reads 9+(bits*Nvalues)/8 bytes

unsigned int OB_io_read_binary_compressed(istream&, float *x, unsigned int bits, unsigned int Nvalues); //Reads 9+(bits*Nvalues)/8 bytes

/* utilities for reading/writing compressed data */

unsigned int OB_io_util_calc_NumBits(unsigned int *x, unsigned int N);

unsigned int OB_io_util_calc_NumBits(float *x, unsigned int N, float res);

/*!

**\brief An abstract base class with binary read and write function.

**Members of this class understand how to read and write themselves

**to and from platform independent binary streams and arrays using

**the functions of this class.

class OBBinaryIO {

public:

virtual ~OBBinaryIO() {}

virtual unsigned int WriteBinary(char *ccc) const = 0;

virtual unsigned int ReadBinary(char *ccc) = 0;

virtual unsigned int WriteBinary(ostream& ostr) const = 0;

virtual unsigned int ReadBinary(istream& istr) = 0;

virtual unsigned int BinarySize() const = 0;

};

/*!

**\brief Writes a OBBinaryIO object to a file stream, preappending

**the record with the size of the OBBinaryIO objects binary record.

ostream& operator<<(ostream& ostr, const OBBinaryIO& obj);

/*!

**\brief Reads in a OBBinaryIO object that has the size of the

**binary record preappended to the record.

istream& operator>>(istream& istr, OBBinaryIO& obj);

}//End namespace OpenBabel

#endif

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