~ubuntu-branches/ubuntu/wily/r-bioc-genomicranges/wily-proposed

« back to all changes in this revision

Viewing changes to R/range-squeezers.R

• browse files at revision 4
• compare with another revision
• download diff
• download tarball
• view history from revision 4

Show diffs side-by-side

added

removed

R/range-squeezers.R

 

1

### =========================================================================

 

2

### Generic functions for squeezing the ranges out of a range-based object

 

3

### -------------------------------------------------------------------------

 

4

 

 

5

### Extract the ranges as a GRanges object.

 

6

setGeneric("granges", signature="x",

 

7

    function(x, use.mcols=FALSE, ...) standardGeneric("granges")

 

8

)

 

9

 

 

10

### Extract the ranges as a GRangesList object.

 

11

setGeneric("grglist", signature="x",

 

12

    function(x, use.mcols=FALSE, ...) standardGeneric("grglist")

 

13

)

 

14

 

 

15

### Extract the ranges as a RangesList object.

 

16

### TODO: This one should probably be in IRanges together with ranges(), which

 

17

### is another range-squeezer.

 

18

### TODO: For consistency the ranges() generic should also get the 'use.mcols'

 

19

### arg with default to FALSE.

 

20

setGeneric("rglist", signature="x",

 

21

    function(x, use.mcols=FALSE, ...) standardGeneric("rglist")

 

22

)

 

23

 

• Older »

Loggerhead is a web-based interface for Breezy
Version: 2.0.1