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  • Committer: Package Import Robot
  • Author(s): Shaun Jackman
  • Date: 2012-05-31 11:39:13 UTC
  • mfrom: (1.1.5)
  • Revision ID: package-import@ubuntu.com-20120531113913-39atrfritvjevhv6
Tags: 1.3.4-1
* New upstream release.
* debian/copyright: Add CityHash, which has an Expat license.
* debian/control: Bump Standards-Version to 3.9.3.1.

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ParseAligns/abyss-fixmate.cc
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#include "Histogram.h"
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#include "IOUtil.h"
 
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#include "MemoryUtil.h"
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#include "SAM.h"
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#include "StringUtil.h"
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#include "Uncompress.h"
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typedef unordered_map<string, SAMAlignment> Alignments;
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#endif
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/** Start of the data segment. */
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static intptr_t sbrk0 = reinterpret_cast<intptr_t>(sbrk(0));
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static void printProgress(const Alignments& map)
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{
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        if (opt::verbose == 0)
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        size_t buckets = map.bucket_count();
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        if (stats.alignments % 1000000 == 0 || buckets != prevBuckets) {
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                ptrdiff_t bytes = reinterpret_cast<intptr_t>(sbrk(0)) - sbrk0;
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                prevBuckets = buckets;
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                size_t size = map.size();
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                cerr << "Read " << stats.alignments << " alignments. "
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                        << "Hash load: " << size << " / " << buckets
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                        << " = " << (float)size / buckets
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                        << " using " << toSI(bytes) << "B." << endl;
 
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                        << " using " << toSI(getMemoryUsage()) << "B." << endl;
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        }
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}
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