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  • Committer: Bazaar Package Importer
  • Author(s): Barry deFreese
  • Date: 2006-07-19 23:28:07 UTC
  • mfrom: (1.1.5 upstream)
  • Revision ID: james.westby@ubuntu.com-20060719232807-et3cdmcjgmnyleyx
Tags: 6.1.20060507-3ubuntu1
Re-merge with Debian

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demo/seedtop.c
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static char const rcsid[] = "$Id: seedtop.c,v 6.11 2005/07/28 14:52:22 coulouri Exp $";
 
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static char const rcsid[] = "$Id: seedtop.c,v 6.12 2006/03/01 13:43:45 coulouri Exp $";
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/* $Id: seedtop.c,v 6.11 2005/07/28 14:52:22 coulouri Exp $ */
 
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/* $Id: seedtop.c,v 6.12 2006/03/01 13:43:45 coulouri Exp $ */
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/**************************************************************************
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*                                                                         *
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*                             COPYRIGHT NOTICE                            *
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Contents: main routine for pseed3, stand-alone counterpart to PHI-BLAST.
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$Revision: 6.11 $
 
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$Revision: 6.12 $
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$Log: seedtop.c,v $
 
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Revision 6.12  2006/03/01 13:43:45  coulouri
 
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From Alejandro Schaffer: do not dereference null pointer
 
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Revision 6.11  2005/07/28 14:52:22  coulouri
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remove dead code
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          init_order(NULL, program_flag, is_dna, seedSearch);
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        }
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        rdpt = readdb_new(database, !is_dna);
 
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        if (NULL == rdpt) {
 
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          ErrPostEx(SEV_FATAL, 1, 0, "seed: Unable to find or open database %s\n", database);
 
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          return (1);
 
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        }
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        if (program_flag == PATTERN_FLAG) {
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            search_pat(rdpt, patfile, is_dna, seedSearch, patternSearch, &error_returns, &info_vnp);
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            PGPOutTextMessages(info_vnp, outfp);