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  • Committer: Bazaar Package Importer
  • Author(s): Andres Salomon
  • Date: 2008-01-05 23:58:56 UTC
  • mfrom: (1.1.1 upstream)
  • Revision ID: james.westby@ubuntu.com-20080105235856-2kmxhxkz14qjy9ia
Tags: 3.5.0-1
* New upstream release.
* Add tcpp.dpatch.  This stops tests/stress/t.cpp from including
  ncbi_pch.hpp.  As far as I can tell, NCBI is not used at all, I have
  no idea where that came from..
* Silence some lintian warnings; binary-arch-rules-but-pkg-is-arch-indep
  and ancient-standards-version.

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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
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<html><head><meta http-equiv="Content-Type" content="text/html;charset=iso-8859-1">
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<title>BitMagic: bm::gap_len_table&lt; T &gt; Struct Template Reference</title>
 
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<title>BitMagic: bm::bit_COUNT_A&lt; W &gt; Struct Template Reference</title>
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<link href="doxygen.css" rel="stylesheet" type="text/css">
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</head><body>
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<!-- Generated by Doxygen 1.4.1 -->
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<div class="qindex"><a class="qindex" href="index.html">Main&nbsp;Page</a> | <a class="qindex" href="modules.html">Modules</a> | <a class="qindex" href="namespaces.html">Namespace List</a> | <a class="qindex" href="hierarchy.html">Class&nbsp;Hierarchy</a> | <a class="qindex" href="classes.html">Alphabetical&nbsp;List</a> | <a class="qindex" href="annotated.html">Data&nbsp;Structures</a> | <a class="qindex" href="dirs.html">Directories</a> | <a class="qindex" href="files.html">File&nbsp;List</a> | <a class="qindex" href="namespacemembers.html">Namespace&nbsp;Members</a> | <a class="qindex" href="functions.html">Data&nbsp;Fields</a> | <a class="qindex" href="globals.html">Globals</a> | <a class="qindex" href="examples.html">Examples</a></div>
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<div class="nav">
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<a class="el" href="a00092.html">bm</a>::<a class="el" href="a00068.html">gap_len_table</a></div>
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<h1>bm::gap_len_table&lt; T &gt; Struct Template Reference<br>
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<small>
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[<a class="el" href="a00096.html">GAP functions</a>]</small>
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</h1>Default GAP lengths table.  
 
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<a class="el" href="a00129.html">bm</a>::<a class="el" href="a00068.html">bit_COUNT_A</a></div>
 
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<h1>bm::bit_COUNT_A&lt; W &gt; Struct Template Reference</h1>Bit COUNT A functor.  
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<a href="#_details">More...</a>
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<p>
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<code>#include &lt;<a class="el" href="a00106.html">bmfunc.h</a>&gt;</code>
 
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<code>#include &lt;<a class="el" href="a00141.html">bmfunc.h</a>&gt;</code>
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<p>
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<table border="0" cellpadding="0" cellspacing="0">
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<tr><td></td></tr>
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<tr><td colspan="2"><br><h2>Static Public Attributes</h2></td></tr>
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<tr><td class="memItemLeft" nowrap align="right" valign="top">static const <a class="el" href="a00092.html#a19">gap_word_t</a>&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="a00068.html#s0">_len</a> [<a class="el" href="a00092.html#a23">bm::gap_levels</a>]</td></tr>
 
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<tr><td colspan="2"><br><h2>Public Member Functions</h2></td></tr>
 
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<tr><td class="memItemLeft" nowrap align="right" valign="top">W&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="a00068.html#a0">operator()</a> (W w1, W w2)</td></tr>
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</table>
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<hr><a name="_details"></a><h2>Detailed Description</h2>
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<h3>template&lt;bool T&gt;<br>
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 struct bm::gap_len_table&lt; T &gt;</h3>
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Default GAP lengths table. 
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<p>
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Definition at line <a class="el" href="a00106.html#l00058">58</a> of file <a class="el" href="a00106.html">bmfunc.h</a>.<hr><h2>Field Documentation</h2>
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<a class="anchor" name="s0" doxytag="bm::gap_len_table::_len"></a><p>
 
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<h3>template&lt;typename W&gt;<br>
 
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 struct bm::bit_COUNT_A&lt; W &gt;</h3>
 
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Bit COUNT A functor. 
 
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<p>
 
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<p>
 
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Definition at line <a class="el" href="a00141.html#l04270">4270</a> of file <a class="el" href="a00141.html">bmfunc.h</a>.<hr><h2>Member Function Documentation</h2>
 
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<a class="anchor" name="a0" doxytag="bm::bit_COUNT_A::operator()"></a><p>
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<table class="mdTable" cellpadding="2" cellspacing="0">
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    <td class="mdRow">
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template&lt;bool T&gt; </td>
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        </tr>
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        <tr>
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          <td class="md" nowrap valign="top">const <a class="el" href="a00092.html#a19">gap_word_t</a> <a class="el" href="a00068.html">bm::gap_len_table</a>&lt; T &gt;::<a class="el" href="a00068.html#s0">_len</a><code> [static]</code>          </td>
 
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template&lt;typename W&gt; </td>
 
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        </tr>
 
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        <tr>
 
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          <td class="md" nowrap valign="top">W <a class="el" href="a00068.html">bm::bit_COUNT_A</a>&lt; W &gt;::operator()           </td>
 
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          <td class="md" valign="top">(&nbsp;</td>
 
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          <td class="md" nowrap valign="top">W&nbsp;</td>
 
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          <td class="mdname" nowrap> <em>w1</em>, </td>
 
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          <td class="md"></td>
 
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          <td class="md" nowrap>W&nbsp;</td>
 
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          <td class="mdname" nowrap> <em>w2</em></td>
 
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        </tr>
 
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        <tr>
 
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          <td class="md"></td>
 
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          <td class="md">)&nbsp;</td>
 
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          <td class="md" colspan="2"><code> [inline]</code></td>
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      </table>
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    </td>
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<p>
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<b>Initial value:</b><div class="fragment"><pre class="fragment"> 
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                { 128, 256, 512, bm::gap_max_buff_len }
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</pre></div>
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<p>
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Definition at line <a class="el" href="a00106.html#l00064">64</a> of file <a class="el" href="a00106.html">bmfunc.h</a>.    </td>
 
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Definition at line <a class="el" href="a00141.html#l04272">4272</a> of file <a class="el" href="a00141.html">bmfunc.h</a>.
 
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<p>
 
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References <a class="el" href="a00141.html#l00209">BM_INCWORD_BITCOUNT</a>.    </td>
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  </tr>
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</table>
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<hr>The documentation for this struct was generated from the following file:<ul>
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<li><a class="el" href="a00106.html">bmfunc.h</a></ul>
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<hr size="1"><address style="align: right;"><small>Generated on Thu Apr 20 13:29:15 2006 for BitMagic by&nbsp;
 
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<li><a class="el" href="a00141.html">bmfunc.h</a></ul>
 
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<hr size="1"><address style="align: right;"><small>Generated on Sun Aug 5 14:12:40 2007 for BitMagic by&nbsp;
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<a href="http://www.doxygen.org/index.html">
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<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.4.1 </small></address>
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</body>