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\documentclass[12pt]{report}
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%% This is an Sweave file. To generate a latex file from this, use (in R):
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%% > Sweave("HVTNscenarios")
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%% and then in a regular Unix (or MSDOS, or...) shell,
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%% $ latex HVTNscenarios
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%% to generate the results.
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%% The following is for creating PDF.
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\ifx\pdfoutput\undefined
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\pdffalse % not running PDFLaTeX
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\pdfoutput=1 % running PDFLaTeX
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% \usepackage{thumbpdf}
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%\usepackage{html,heqn,htmllist}
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%\usepackage[latex2html]{hyperref}
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\usepackage[pdftex]{graphicx}
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\usepackage[pdftex]{hyperref}
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\usepackage[dvips]{graphicx}
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\usepackage[dvips]{hyperref}
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\usepackage[authoryear,round]{natbib}
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\addtolength{\oddsidemargin}{-0.5in}
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\addtolength{\textheight}{0.2in}
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\addtolength{\textwidth}{1in}
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\hypersetup{backref,colorlinks=true,pagebackref=true,
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hyperindex=true}%pdfpagemode=FullScreen,
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\DeclareGraphicsExtensions{.jpg,.pdf,.png,.mps}
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An example for using Sweave.
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%% For setting graphics for Sweave
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%\setkeys{Gin}{width=5cm}
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%\setkeys{Gin}{width=0.8\textwidth}
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Possible settings for sweave chunks:
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\item fig=TRUE, eps=FALSE
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\item results=hide, tex
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Indexing works. You can see that from Table~\ref{tab:1} and
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Figure~\ref{fig:control}.
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<<Check library existence,echo=FALSE,eval=TRUE>>=
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xtableExists <- require(xtable)
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We have our first table
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<<example output for data 1,results=tex,echo=FALSE>>=
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and the second table, with Caption and \LaTeX{} reference label.
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<<example output for data 1,results=tex,echo=FALSE>>=
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xtable(my.lm.fit,caption="My First Table Caption",label="tab:1")
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We could do the same thing and echo the code, as well:
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We have our first table
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<<example output for data 1,results=tex,echo=TRUE>>=
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and the second table, with Caption and \LaTeX{} reference label.
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<<example output for data 1,results=tex,echo=TRUE>>=
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xtable(my.lm.fit,caption="My Second Table Caption",label="tab:2")
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Normally you can just include plots, by specifying that the chunk
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<<exampleFigureOne,fig=TRUE,echo=FALSE>>=
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plot(rnorm(10),rnorm(10))
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However, if you want more control, such as Labels on figures as well
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as floating placement (i.e. letting \LaTeX{} place it for you
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appropriately), you might:
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<<exampleFigureTwo,fig=TRUE,echo=FALSE>>=
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plot(rnorm(10),rnorm(10))
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\caption{Example of more control}
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doc/useR-2006-ESS/Lab2/Sweave-Example.Rnw
