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sequence alignment
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Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann,
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Burkhard Morgenstern, BMC Bioinformatics 6:66, 2005
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Files: FMIndex/bit_array.h
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Copyright: Copyright 2010 Daisuke Okanohara
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License: BSD-3-clause
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions
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Redistributions of source code must retain the above Copyright
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notice, this list of conditions and the following disclaimer.
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Redistributions in binary form must reproduce the above Copyright
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notice, this list of conditions and the following disclaimer in the
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documentation and/or other materials provided with the distribution.
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Neither the name of the authors nor the names of its contributors
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may be used to endorse or promote products derived from this
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software without specific prior written permission.
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Files: FMIndex/sais.hxx
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Copyright: Copyright 2010 Yuta Mori
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Permission is hereby granted, free of charge, to any person
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obtaining a copy of this software and associated documentation
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files (the "Software"), to deal in the Software without
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restriction, including without limitation the rights to use,
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copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the
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Software is furnished to do so, subject to the following
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The above copyright notice and this permission notice shall be
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included in all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
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OTHER DEALINGS IN THE SOFTWARE.