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debian/patches/abyss-pe

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--- abyss-1.2.7.orig/bin/abyss-pe

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+++ abyss-1.2.7/bin/abyss-pe

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@@ -2,6 +2,9 @@

 

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Index: abyss-1.3.0/bin/abyss-pe

 

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===================================================================

 

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--- abyss-1.3.0.orig/bin/abyss-pe       2011-09-09 14:59:21.000000000 -0700

 

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+++ abyss-1.3.0/bin/abyss-pe    2011-09-11 09:39:29.000000000 -0700

 

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@@ -2,6 +2,7 @@

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 # Run the ABySS paired-end assembler.

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 # Written by Shaun Jackman <sjackman@bcgsc.ca>.

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+PATH:=/usr/lib/abyss:${PATH}

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+SHELL=/bin/bash

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+

 

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 SHELL=/bin/bash -o pipefail

 

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 # Integrate with Sun Grid Engine (SGE)

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 ifdef JOB_NAME

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 name?=$(JOB_NAME)

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