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Viewing changes to .pc/dont_forget_flags_debian.patch/Makefile

  • Committer: Package Import Robot
  • Author(s): Cédric Boutillier
  • Date: 2013-07-09 10:44:01 UTC
  • mfrom: (2.1.2 experimental)
  • Revision ID: package-import@ubuntu.com-20130709104401-5q66ozz5j5af0dak
Tags: 0.5+dfsg-3
* Upload to unstable.
* modify remove_failing_tests_on_32bits.patch to replace command of
  0009RenderStairCase test with an empty one instead of deleting it.
* remove lintian override about spelling error

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.pc/dont_forget_flags_debian.patch/Makefile
 
1
ALL: default
 
2
 
 
3
# GPROFFLAG = -pg
 
4
 GPROFFLAG = -g
 
5
 
 
6
PREFIX?=/usr/local
 
7
 
 
8
BINDIR=$(PREFIX)/bin
 
9
 
 
10
RELEASEDIR = gfan0.5
 
11
MAIN       = gfan
 
12
 
 
13
GCATSPATH   = ./
 
14
 
 
15
 
 
16
ifeq ($(sagepath),)
 
17
SAGE_LINKOPTIONS = 
 
18
SAGE_INCLUDEOPTIONS =
 
19
else
 
20
SAGE_LINKOPTIONS = -L$(sagepath)/ -lpython2.6 -lcsage -lsingular
 
21
SAGE_INCLUDEOPTIONS = -I $(sagepath)/
 
22
SAGE_OBJECTS = sage.o sage_link.so
 
23
 
 
24
sage_link.so: sage_link.pyx setup.py
 
25
        python setup.py build_ext --inplace --pyrex-include-dirs=$(SAGE_ROOT)/devel/sage/
 
26
endif
 
27
 
 
28
ifeq ($(gmppath),)
 
29
GMP_LINKOPTIONS = -lgmp
 
30
GMP_INCLUDEOPTIONS =
 
31
else
 
32
GMP_LINKOPTIONS = $(gmppath)/lib/libgmp.a
 
33
GMP_INCLUDEOPTIONS = -I $(gmppath)/include
 
34
endif
 
35
 
 
36
ifeq ($(cddpath),)
 
37
CDD_LINKOPTIONS = -L/usr/local -lcddgmp
 
38
CDD_INCLUDEOPTIONS =
 
39
else
 
40
CDD_LINKOPTIONS = $(cddpath)/lib/libcddgmp.a
 
41
CDD_INCLUDEOPTIONS = -I $(cddpath)/include
 
42
endif
 
43
 
 
44
ifeq ($(soplex),)
 
45
SOPLEX_PATH =
 
46
SOPLEX_LINKOPTIONS =
 
47
SOPLEX_INCLUDEOPTIONS =
 
48
SOPLEX_OBJECTS =
 
49
else
 
50
SOPLEX_PATH = $(HOME)/math/software/soplex-1.3.2
 
51
# SOPLEX_LINKOPTIONS = -lz $(SOPLEX_PATH)/lib/libsoplex.linux.x86.gnu.opt.a
 
52
SOPLEX_LINKOPTIONS = -lz $(SOPLEX_PATH)/lib/libsoplex.darwin.x86.gnu.opt.a
 
53
SOPLEX_INCLUDEOPTIONS = -I $(SOPLEX_PATH)/src
 
54
SOPLEX_OBJECTS = lp_soplexcdd.o
 
55
endif
 
56
 
 
57
ifeq ($(singular),)
 
58
SINGULAR_PATH =
 
59
SINGULAR_LINKOPTIONS =
 
60
SINGULAR_INCLUDEOPTIONS =
 
61
SINGULAR_OBJECTS =
 
62
else
 
63
SINGULAR_PATH = $(HOME)/math/software/Singular-3-1-0
 
64
SINGULAR_LINKOPTIONS =  -L$(SINGULAR_PATH)/Singular -lsingular -lncurses -lreadline
 
65
SINGULAR_INCLUDEOPTIONS = -I $(SINGULAR_PATH)/kernel -I $(SINGULAR_PATH)/omalloc
 
66
SINGULAR_OBJECTS = singular.o singularconversion.o
 
67
endif
 
68
 
 
69
 
 
70
 
 
71
ADDITIONALLINKOPTIONS = $(CDD_LINKOPTIONS) $(GMP_LINKOPTIONS) $(SOPLEX_LINKOPTIONS) $(SINGULAR_LINKOPTIONS) $(SAGE_LINKOPTIONS)
 
72
ADDITIONALINCLUDEOPTIONS = $(CDD_INCLUDEOPTIONS) $(GMP_INCLUDEOPTIONS) $(SOPLEX_INCLUDEOPTIONS) $(SINGULAR_INCLUDEOPTIONS) $(SAGE_INCLUDEOPTIONS)
 
73
 
 
74
 
 
75
MKDIR=mkdir -p
 
76
 
 
77
 
 
78
SHELL       = /bin/sh
 
79
#ARCH        = LINUX
 
80
CC          = gcc
 
81
CLINKER     = $(CC)
 
82
CXX         = g++
 
83
CCLINKER    = $(CXX)
 
84
#OPTFLAGS    = -O2 -DGMPRATIONAL -DNDEBUG
 
85
OPTFLAGS    = -O2 -DGMPRATIONAL -Wuninitialized
 
86
 
 
87
CFLAGS    = $(OPTFLAGS) $(GPROFFLAG) $(ADDITIONALINCLUDEOPTIONS) #-pedantic
 
88
CCFLAGS   = $(CFLAGS)
 
89
FFLAGS    = $(OPTFLAGS)
 
90
 
 
91
CATSOBJECTS =   $(GCATSPATH)lp_cdd.o \
 
92
                $(SOPLEX_OBJECTS) \
 
93
                $(SINGULAR_OBJECTS) \
 
94
                $(SAGE_OBJECTS) \
 
95
                $(GCATSPATH)parser.o \
 
96
                $(GCATSPATH)field.o \
 
97
                $(GCATSPATH)monomial.o \
 
98
                $(GCATSPATH)printer.o   \
 
99
                $(GCATSPATH)polynomial.o \
 
100
                $(GCATSPATH)termorder.o \
 
101
                $(GCATSPATH)term.o \
 
102
                $(GCATSPATH)vektor.o \
 
103
                $(GCATSPATH)division.o \
 
104
                $(GCATSPATH)buchberger.o \
 
105
                $(GCATSPATH)wallideal.o \
 
106
                $(GCATSPATH)lp.o \
 
107
                $(GCATSPATH)enumeration.o \
 
108
                $(GCATSPATH)ep_standard.o \
 
109
                $(GCATSPATH)ep_xfig.o \
 
110
                $(GCATSPATH)reversesearch.o \
 
111
                $(GCATSPATH)application.o \
 
112
                $(GCATSPATH)timer.o \
 
113
                $(GCATSPATH)renderer.o \
 
114
                $(GCATSPATH)field_rationals.o \
 
115
                $(GCATSPATH)symmetry.o \
 
116
                $(GCATSPATH)breadthfirstsearch.o \
 
117
                $(GCATSPATH)genericwalk.o \
 
118
                $(GCATSPATH)minkowskisum.o \
 
119
                $(GCATSPATH)newtonpolytope.o \
 
120
                $(GCATSPATH)tropical.o \
 
121
                $(GCATSPATH)dimension.o \
 
122
                $(GCATSPATH)bergman.o \
 
123
                $(GCATSPATH)subspace.o \
 
124
                $(GCATSPATH)polyhedralcone.o \
 
125
                $(GCATSPATH)gfanapplication.o \
 
126
                $(GCATSPATH)polyhedralfan.o \
 
127
                $(GCATSPATH)tropical2.o \
 
128
                $(GCATSPATH)gmpallocator.o \
 
129
                $(GCATSPATH)field_zmodpz.o \
 
130
                binomial.o \
 
131
                matrix.o \
 
132
                latticeideal.o \
 
133
                scarf.o \
 
134
                xfig.o \
 
135
                halfopencone.o \
 
136
                lll.o \
 
137
                multiplicity.o \
 
138
                substitute.o \
 
139
                polymakefile.o \
 
140
                saturation.o \
 
141
                determinant.o \
 
142
                polynomialring.o \
 
143
                log.o \
 
144
                tropicalbasis.o \
 
145
                symmetriccomplex.o \
 
146
                linalg.o \
 
147
                minors.o \
 
148
                continuedfractions.o \
 
149
                triangulation.o \
 
150
                minkowskidual.o \
 
151
                regularsubdivision.o \
 
152
                fieldlp.o \
 
153
                field_rationalfunctions.o \
 
154
                tropical_weildivisor.o \
 
155
                intsinpolytope.o\
 
156
                lattice.o \
 
157
                graph.o \
 
158
                restrictedautoreduction.o \
 
159
                tropicaltraverse.o \
 
160
                groebnerengine.o \
 
161
                ge_gfan.o \
 
162
                nbody.o \
 
163
                codimoneconnectedness.o \
 
164
                tropicalmap.o \
 
165
                symmetrictraversal.o \
 
166
                traverser_tropical.o \
 
167
                traverser_groebnerfan.o \
 
168
                field_rationalfunctions2.o \
 
169
        mixedvolume.o \
 
170
        traverser_stableintersection.o \
 
171
        traverser_secondaryfan.o \
 
172
        linalgfloat.o \
 
173
        primarydecomposition.o \
 
174
        tropicaldeterminant.o \
 
175
        determinantpoly.o \
 
176
        traverser_sphere.o \
 
177
        gfanlib_zcone.o \
 
178
        gfanlib_symmetry.o \
 
179
        gfanlib_symmetriccomplex.o \
 
180
        gfanlib_polyhedralfan.o \
 
181
        gfanlib_zfan.o \
 
182
        gfanlib_polymakefile.o \
 
183
        padic.o \
 
184
        integergb.o \
 
185
        #       restrictedgfan.o \
 
186
 
 
187
APPDELETEOBJECTS =              app_add.o \
 
188
                app_berndssuggestion.o \
 
189
                app_grassmanndata2.o \
 
190
                app_grassmanndata3.o \
 
191
                app_construction.o \
 
192
                app_checkridges.o \
 
193
                app_edwinsconjecture.o \
 
194
                app_fvector.o \
 
195
                app_grassmanndata.o \
 
196
                app_groupfacetbinomials.o \
 
197
                app_istriangulation.o \
 
198
                app_latticetest.o \
 
199
                app_markpolynomialset.o \
 
200
                app_moeckel.o \
 
201
                app_polytopetopolynomial.o \
 
202
                app_rendernewtonpolytope.o \
 
203
                app_tropical.o \
 
204
                app_xfigconstruction.o \
 
205
                app_liststandardmonomials.o \
 
206
#               app_isrefinement.o \    # needs to be fixed so that it compiles with gcc version 2.96 (legolas.imf.au.dk)
 
207
 
 
208
 
 
209
APPOBJECTS = app_main.o \
 
210
                app_buchberger.o \
 
211
                app_doesidealcontain.o \
 
212
                app_facets.o \
 
213
                app_groebnercone.o \
 
214
                app_homogeneityspace.o \
 
215
                app_homogenize.o \
 
216
                app_initialforms.o \
 
217
                app_interactive.o \
 
218
                app_isgroebnerbasis.o \
 
219
                app_ismarkedgroebnerbasis.o \
 
220
                app_krulldimension.o \
 
221
                app_leadingterms.o \
 
222
                app_multiplymatrix.o \
 
223
                app_polynomialsetunion.o \
 
224
                app_render.o \
 
225
                app_renderstaircase.o \
 
226
                app_stats.o \
 
227
                app_substitute.o \
 
228
                app_supportindices.o \
 
229
                app_tolatex.o \
 
230
                app_transposematrix.o \
 
231
                app_tropicalbasis.o \
 
232
                app_tropicalintersection.o \
 
233
                app_tropicalstartingcone.o \
 
234
                app_tropicaltraverse.o \
 
235
                app_walk.o \
 
236
                app_weightvector.o \
 
237
                app_scarfisgeneric.o \
 
238
                app_scarfvisualize.o \
 
239
                app_scarfcomplex.o \
 
240
                app_sturmsequence.o \
 
241
                app_latticeideal.o \
 
242
                app_lll.o \
 
243
                app_tropicalmultiplicity.o \
 
244
                app_idealintersection.o \
 
245
                app_test.o \
 
246
                app_saturation.o \
 
247
                app_idealproduct.o \
 
248
                app_representatives.o \
 
249
                app_tropicallifting.o \
 
250
                app_topolyhedralfan.o \
 
251
                app_tropicalbruteforce.o \
 
252
                app_secondaryfan.o \
 
253
                app_composepermutations.o \
 
254
                app_minors.o \
 
255
                app_tropicalrank.o \
 
256
                app_minkowski.o \
 
257
                app_triangulate.o \
 
258
                app_tropicallinearspace.o \
 
259
                app_combinerays.o \
 
260
                app_regularsubdivision.o \
 
261
                app_lpsolve.o \
 
262
                app_tropicalweildivisor.o \
 
263
                app_lattice.o \
 
264
                app_intsinpolytope.o\
 
265
                app_tropicalevaluation.o \
 
266
                app_smalessixth.o \
 
267
                app_smalessixth2.o \
 
268
                app_nbody.o \
 
269
                app_spolynomial.o \
 
270
                app_link.o \
 
271
                app_normalfancleanup.o \
 
272
                app_tropicalfunction.o \
 
273
                app_volume.o \
 
274
                app_isconnected.o \
 
275
                app_tropicalhypersurface.o \
 
276
                app_product.o \
 
277
                app_commonrefinement.o \
 
278
                app_tropicalimage.o \
 
279
                app_groebnerfan.o \
 
280
                app_fanhomology.o \
 
281
                app_genericlinearchange.o \
 
282
                app_mixedvolume.o \
 
283
                app_fiberpolytope.o \
 
284
                app_symmetries.o \
 
285
                app_evaluate.o \
 
286
                app_exponentlattice.o \
 
287
                app_minimalassociatedprimes.o \
 
288
                app_realroots.o \
 
289
                app_initialdeterminant.o \
 
290
                app_fansubfan.o \
 
291
                app_fancones.o \
 
292
                app_issmooth.o \
 
293
                app_fancoarsening.o \
 
294
                app_pointconfiguration.o \
 
295
                app_librarytest.o \
 
296
                app_padic.o \
 
297
                app_integergb.o \
 
298
                app_matrixproduct.o \
 
299
                app_traversetropicalintersection.o \
 
300
                app_markpolynomialset.o \
 
301
 
 
302
EXECS     = $(MAIN)
 
303
 
 
304
# Define suffixes to make the program compile on legolas.imf.au.dk :
 
305
.SUFFIXES: .o .cpp .c
 
306
 
 
307
OBJECTS = $(CATSOBJECTS) $(APPOBJECTS)
 
308
 
 
309
all: $(MAIN)
 
310
 
 
311
$(BINDIR): $(PREFIX)
 
312
        $(MKDIR) $(BINDIR)
 
313
 
 
314
$(PREFIX):
 
315
        $(MKDIR) $(PREFIX)
 
316
 
 
317
default: $(OBJECTS) $(ADDITIONALOBJECTS) $(EXECS)
 
318
 
 
319
$(MAIN): $(OBJECTS)
 
320
        $(CCLINKER) $(OBJECTS) $(ADDITIONALLINKOPTIONS) $(GPROFFLAG) -o $(MAIN)
 
321
 
 
322
release:
 
323
        rm -f -r $(RELEASEDIR)/*
 
324
        mkdir -p $(RELEASEDIR)
 
325
        cp *.cpp $(RELEASEDIR)
 
326
        cp *.h $(RELEASEDIR)
 
327
        cp Makefile $(RELEASEDIR)
 
328
        cp macmake $(RELEASEDIR)
 
329
        cp README $(RELEASEDIR)
 
330
        cp LICENSE $(RELEASEDIR)
 
331
        cp COPYING $(RELEASEDIR)
 
332
 
 
333
        mkdir -p $(RELEASEDIR)/gfanlib
 
334
        cp gfanlib/Makefile $(RELEASEDIR)/gfanlib/
 
335
        cp gfanlib/Makefile.in $(RELEASEDIR)/gfanlib/
 
336
        cp gfanlib/README.txt $(RELEASEDIR)/gfanlib/
 
337
        cp gfanlib/configure $(RELEASEDIR)/gfanlib/
 
338
        cp gfanlib/configure.ac $(RELEASEDIR)/gfanlib/
 
339
 
 
340
        cp Doxyfile $(RELEASEDIR)
 
341
        echo const char *GFAN_RELEASEDIR=\"$(RELEASEDIR)\"";" const char *GFAN_FORKTIME= >$(RELEASEDIR)/versioninfo.h
 
342
        date "+\"%s %a %h %d %H:%M:%S %Y\"" >>$(RELEASEDIR)/versioninfo.h
 
343
        echo ";" >>$(RELEASEDIR)/versioninfo.h
 
344
        mkdir -p $(RELEASEDIR)/examples/
 
345
#General examples:
 
346
        cp examples/2x2of2x3 $(RELEASEDIR)/examples/
 
347
        cp examples/2x2of2x4 $(RELEASEDIR)/examples/
 
348
        cp examples/2x2of3x3 $(RELEASEDIR)/examples/
 
349
        cp examples/2x2of4x4 $(RELEASEDIR)/examples/
 
350
        cp examples/4x4of4x5 $(RELEASEDIR)/examples/
 
351
        cp examples/4x4of5x5 $(RELEASEDIR)/examples/
 
352
        cp examples/6x6-subPfaffians $(RELEASEDIR)/examples/
 
353
        cp examples/cyclic4 $(RELEASEDIR)/examples/
 
354
        cp examples/linhyper5_2 $(RELEASEDIR)/examples/
 
355
        cp examples/linhyper5_2.cone $(RELEASEDIR)/examples/
 
356
        cp examples/pablo $(RELEASEDIR)/examples/
 
357
        cp examples/symmetryTest $(RELEASEDIR)/examples/
 
358
#Examples in Groebner fan paper:
 
359
        cp examples/examplePaper $(RELEASEDIR)/examples/
 
360
        cp examples/sturmfels3.9 $(RELEASEDIR)/examples/
 
361
        cp examples/3x3of3x4 $(RELEASEDIR)/examples/
 
362
        cp examples/3x3of3x5 $(RELEASEDIR)/examples/
 
363
        cp examples/3x3of4x4 $(RELEASEDIR)/examples/
 
364
#       cp examples/3x3of4x4sym $(RELEASEDIR)/examples/
 
365
        cp examples/grassmann2_5 $(RELEASEDIR)/examples/
 
366
        cp examples/cyclic5 $(RELEASEDIR)/examples/
 
367
#       cp examples/J4 $(RELEASEDIR)/examples/
 
368
#Examples useful for tropical computations:
 
369
#       cp examples/grassmann2_5 $(RELEASEDIR)/examples/
 
370
        cp examples/grassmann2_5.cone $(RELEASEDIR)/examples/
 
371
        cp examples/grassmann2_6 $(RELEASEDIR)/examples/
 
372
        cp examples/grassmann2_6.cone $(RELEASEDIR)/examples/
 
373
        cp examples/grassmann3_6 $(RELEASEDIR)/examples/
 
374
        cp examples/grassmann3_6.cone $(RELEASEDIR)/examples/
 
375
#Examples in tropical paper:
 
376
        cp examples/hankel3x3of4x4 $(RELEASEDIR)/examples/
 
377
        cp examples/hankel3x3of4x4.cone $(RELEASEDIR)/examples/
 
378
        cp examples/hankel3x3of4x5 $(RELEASEDIR)/examples/
 
379
        cp examples/hankel3x3of4x5.cone $(RELEASEDIR)/examples/
 
380
#       cp examples/hankel3x3of5x5 $(RELEASEDIR)/examples/
 
381
#       cp examples/hankel3x3of5x5.cone $(RELEASEDIR)/examples/
 
382
        cp examples/3x3of3x5.cone $(RELEASEDIR)/examples/
 
383
#       cp examples/3x3of4x4sym $(RELEASEDIR)/examples/
 
384
        cp examples/3x3of4x4sym.cone $(RELEASEDIR)/examples/
 
385
#       cp examples/3x3of5x5sym $(RELEASEDIR)/examples/
 
386
#       cp examples/3x3of5x5sym.cone $(RELEASEDIR)/examples/
 
387
        cp examples/commat2x2 $(RELEASEDIR)/examples/
 
388
        cp examples/commat2x2.cone $(RELEASEDIR)/examples/
 
389
#       cp examples/commat3x3 $(RELEASEDIR)/examples/
 
390
#       cp examples/commat3x3.cone $(RELEASEDIR)/examples/
 
391
 
 
392
        cp -r testsuite $(RELEASEDIR)/
 
393
 
 
394
        mkdir -p $(RELEASEDIR)/doc/
 
395
        cp doc/Makefile $(RELEASEDIR)/doc/
 
396
        cp doc/*.bib $(RELEASEDIR)/doc/
 
397
        cp doc/*.bbl $(RELEASEDIR)/doc/
 
398
        cp doc/*.tex $(RELEASEDIR)/doc/
 
399
        cp doc/*.dvi $(RELEASEDIR)/doc/
 
400
        cp doc/*.eps $(RELEASEDIR)/doc/
 
401
        cp doc/*.bst $(RELEASEDIR)/doc/
 
402
        cp doc/Makefile $(RELEASEDIR)/doc/
 
403
        mkdir -p $(RELEASEDIR)/homepage/
 
404
        cp homepage/*.png $(RELEASEDIR)/homepage/
 
405
        cp homepage/*.html $(RELEASEDIR)/homepage/
 
406
        cp homepage/Makefile $(RELEASEDIR)/homepage/
 
407
        mkdir -p $(RELEASEDIR)/homepage/presentation
 
408
        cp homepage/presentation/*.fig $(RELEASEDIR)/homepage/presentation/
 
409
        cp homepage/presentation/*.tex $(RELEASEDIR)/homepage/presentation/
 
410
        cp homepage/presentation/*.eps $(RELEASEDIR)/homepage/presentation/
 
411
        cp homepage/presentation/*.bib $(RELEASEDIR)/homepage/presentation/
 
412
        cp homepage/presentation/*.bbl $(RELEASEDIR)/homepage/presentation/
 
413
        cp homepage/presentation/*.ps $(RELEASEDIR)/homepage/presentation/
 
414
        cp homepage/presentation/*.pdf $(RELEASEDIR)/homepage/presentation/
 
415
        cp homepage/presentation/Makefile $(RELEASEDIR)/homepage/presentation/
 
416
 
 
417
        tar -c $(RELEASEDIR) > $(RELEASEDIR).tar  
 
418
        gzip $(RELEASEDIR).tar
 
419
 
 
420
clean:
 
421
        /bin/rm -f *.o $(EXECS) $(MAIN)
 
422
install: $(BINDIR)
 
423
        cp $(EXECS) $(BINDIR)
 
424
#       cp $(EXECS) /usr/local/bin
 
425
#       ./gfan installlinks --path $(BINDIR)/
 
426
        cd $(BINDIR) && ./gfan installlinks
 
427
library:
 
428
        /bin/rm -f gfanlib/*.a
 
429
        /bin/rm -f gfanlib/*.o
 
430
        cp gfanlib.h gfanlib/
 
431
        cp gfanlib_* gfanlib/
 
432
        tar zcf -  gfanlib > gfanlib.tar.gz
 
433
.c.o:
 
434
        $(CC) $(CFLAGS) -c $<
 
435
.cc.o:
 
436
        $(CXX) -c $<
 
437
.cpp.o:
 
438
        $(CXX) $(CFLAGS) -c $<
 
439
.C.o:
 
440
        $(CXX) -c $<
 
441
# wget http://ftp.sunet.se/pub/gnu/gmp/gmp-4.2.2.tar.gz
 
442
# tar -xzvf gmp-4.2.2.tar.gz
 
443
# cd gmp-4.2.2
 
444
# ./configure --prefix=$HOME/gmp
 
445
# make
 
446
# make install
 
447
# make check
 
448
# cd..
 
449
 
 
450
# wget ftp://ftp.ifor.math.ethz.ch/pub/fukuda/cdd/cddlib-094d.tar.gz  # THIS LINE DOES NOT WORK!
 
451
# tar -xzvf cddlib-094d.tar.gz
 
452
# cd cddlib-094d
 
453
# ./configure --prefix="$HOME/cddlib" CFLAGS="-I$HOME/gmp/include -L$HOME/gmp/lib"