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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2011-06-17 13:51:18 UTC
  • mfrom: (3.1.6 sid)
  • Revision ID: james.westby@ubuntu.com-20110617135118-hncy38e0134j8oi5
Tags: 1.6.901-1
* New upstream release.
* Point debian/watch to search.cpan.org.
* Build using dh and overrides:
  - Use Debhelper 8 (debian/rules, debian/control).
  - Simplified debian/rules.
* Split into libbio-perl-perl, as discussed with the Debian Perl team.
  (debian/control, debian/bioperl.install, debian libbio-perl-perl.install)
* debian/control:
  - Incremented Standards-Version to reflect conformance with Policy 3.9.2.
    No other changes needed.
  - Vcs-Browser URL made redirectable to viewvc.
  - Removed useless ‘svn’ in the Vcs-Svn URL.

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Bio/AlignIO/psi.pm
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# $Id: psi.pm 16123 2009-09-17 12:57:27Z cjfields $
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#
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# BioPerl module for Bio::AlignIO::psi
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#
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of the bugs and their resolution. Bug reports can be submitted via
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the web:
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  http://bugzilla.open-bio.org/
 
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  https://redmine.open-bio.org/projects/bioperl/
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=head1 AUTHOR - Jason Stajich
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        my $seq = Bio::LocatableSeq->new(-seq => $seqs{$id},
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                                        -id  => $id,
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                                        -start => 1,
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                                        -end   => length($seqs{$id}) - $gaps
 
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                                        -end   => length($seqs{$id}) - $gaps,
 
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                                         -alphabet => $self->alphabet,
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                    );
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        $aln->add_seq($seq);
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    }