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mdadm (2.4.1-5) unstable; urgency=low
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that you have a valid configuration file. If none is present during package
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configuration, mdadm *will* try to generate one, but it will only contain
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started automatically after boot (with the exception of the root partition).
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all the arrays the way you like it, then run
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/usr/share/mdadm/mkconf force-generate /etc/mdadm/mdadm.conf