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Committer: corrado maurini
Date: 2012-12-18 12:16:08 UTC
mfrom: (6685.78.207 trunk)
Revision ID: corrado.maurini@upmc.fr-20121218121608-nk82ly9jgsld9u84

updating with trunk, fix uint in TAO solver and hacking the check for tao FindTAO.cmake

files added:
cmake/scripts/generate-all

demo/undocumented/csg

demo/undocumented/csg/2D

demo/undocumented/csg/2D/cpp

demo/undocumented/csg/2D/cpp/CMakeLists.txt

demo/undocumented/csg/2D/cpp/main.cpp

demo/undocumented/csg/2D/python

demo/undocumented/csg/2D/python/demo_csg_2D.py

demo/undocumented/csg/3D

demo/undocumented/csg/3D/cpp

demo/undocumented/csg/3D/cpp/CMakeLists.txt

demo/undocumented/csg/3D/cpp/failing.cpp

demo/undocumented/csg/3D/cpp/main.cpp

demo/undocumented/csg/3D/python

demo/undocumented/csg/3D/python/demo_csg_3D.py

demo/undocumented/plot-qt

demo/undocumented/plot-qt/cpp

demo/undocumented/plot-qt/cpp/BoundaryMeshFunction.cpp

demo/undocumented/plot-qt/cpp/BoundaryMeshFunction.h

demo/undocumented/plot-qt/cpp/CMakeLists.txt

demo/undocumented/plot-qt/cpp/CoordLabel.cpp

demo/undocumented/plot-qt/cpp/CoordLabel.h

demo/undocumented/plot-qt/cpp/PlotWidget.cpp

demo/undocumented/plot-qt/cpp/PlotWidget.h

demo/undocumented/plot-qt/cpp/Plotter.cpp

demo/undocumented/plot-qt/cpp/Plotter.h

demo/undocumented/plot-qt/cpp/main.cpp

demo/undocumented/restriction

demo/undocumented/restriction/cpp

demo/undocumented/restriction/cpp/CMakeLists.txt

demo/undocumented/restriction/cpp/Poisson.h

demo/undocumented/restriction/cpp/Poisson.ufl

demo/undocumented/restriction/cpp/main.cpp

demo/undocumented/restriction/python

demo/undocumented/restriction/python/README

demo/undocumented/singular

demo/undocumented/singular/cpp

demo/undocumented/singular/cpp/CMakeLists.txt

demo/undocumented/singular/cpp/Poisson.h

demo/undocumented/singular/cpp/Poisson.ufl

demo/undocumented/singular/cpp/main.cpp

demo/undocumented/singular/python

demo/undocumented/singular/python/demo_singular.py

dolfin/generation/CSGCGALMeshGenerator2D.cpp

dolfin/generation/CSGCGALMeshGenerator2D.h

dolfin/generation/CSGCGALMeshGenerator3D.cpp

dolfin/generation/CSGCGALMeshGenerator3D.h

dolfin/generation/CSGGeometries3D.cpp

dolfin/generation/CSGGeometries3D.h

dolfin/generation/CSGGeometry.cpp

dolfin/generation/CSGGeometry.h

dolfin/generation/CSGMeshGenerator.cpp

dolfin/generation/CSGMeshGenerator.h

dolfin/generation/CSGOperators.cpp

dolfin/generation/CSGOperators.h

dolfin/generation/CSGPrimitive.h

dolfin/generation/CSGPrimitives2D.cpp

dolfin/generation/CSGPrimitives2D.h

dolfin/generation/CSGPrimitives3D.cpp

dolfin/generation/CSGPrimitives3D.h

dolfin/generation/GeometryToCGALConverter.cpp

dolfin/generation/GeometryToCGALConverter.h

dolfin/generation/Interval.h

dolfin/generation/PolyhedronUtils.cpp

dolfin/generation/PolyhedronUtils.h

dolfin/generation/UnitCircle.h

dolfin/generation/UnitCube.h

dolfin/generation/UnitInterval.h

dolfin/generation/UnitSquare.h

dolfin/generation/cgal_csg3d.h

dolfin/generation/self_intersect.h

dolfin/io/SVGFile.cpp

dolfin/io/SVGFile.h

dolfin/la/GenericPreconditioner.h

dolfin/mesh/Restriction.cpp

dolfin/mesh/Restriction.h

dolfin/plot/VTKPlottableCSGGeometry.cpp

dolfin/plot/VTKPlottableCSGGeometry.h

dolfin/plot/VTKPlottableDirichletBC.cpp

dolfin/plot/VTKPlottableDirichletBC.h

dolfin/plot/VTKPlottableGenericFunction1D.cpp

dolfin/plot/VTKPlottableGenericFunction1D.h

dolfin/plot/VTKPlottableMeshFunction.cpp

dolfin/plot/VTKWindowOutputStage.cpp

dolfin/plot/VTKWindowOutputStage.h

dolfin/plot/gauss_120.dat

dolfin/swig/adaptivity/post.i

dolfin/swig/generation/post.i

dolfin/swig/io/pre.i

dolfin/swig/modules/la/dependencies.txt

scripts/dolfin-convert/test_Triangle.edge

test/unit/io/python/SVG.py

test/unit/meshconvert/python/data/test_Triangle_3.edge

test/unit/meshconvert/python/data/test_Triangle_3.ele

test/unit/meshconvert/python/data/test_Triangle_3.node

files removed:
demo/undocumented/heatequation

demo/undocumented/heatequation/cpp

demo/undocumented/heatequation/cpp/CMakeLists.txt

demo/undocumented/heatequation/cpp/HeatEquation.ufl

demo/undocumented/heatequation/cpp/HeatEquationExperimental.py

demo/undocumented/heatequation/cpp/Heat_2D.h

demo/undocumented/heatequation/cpp/Heat_2DKronecker.h

demo/undocumented/heatequation/cpp/Heat_2D_rhs.h

demo/undocumented/heatequation/cpp/Heat_2D_rhsKronecker.h

demo/undocumented/heatequation/cpp/main.cpp

demo/undocumented/heatequation/python

demo/undocumented/heatequation/python/README

demo/undocumented/restriction

demo/undocumented/restriction/cpp

demo/undocumented/restriction/cpp/CMakeLists.txt

demo/undocumented/restriction/cpp/README

demo/undocumented/restriction/python

demo/undocumented/restriction/python/demo_restriction.py

dolfin/generation/UnitSphere.cpp

dolfin/generation/UnitSphere.h

dolfin/la/SingularSolver.cpp

dolfin/la/SingularSolver.h

test/unit/fem/python/_old_restriction_test.py

files renamed:
demo/undocumented/meshintersection/2D/python/demo_2D.py => demo/undocumented/meshintersection/2D/python/demo_meshintersection_2D.py

demo/undocumented/meshintersection/3D/python/demo_3D.py => demo/undocumented/meshintersection/3D/python/demo_meshintersection_3D.py

dolfin/generation/Box.cpp => dolfin/generation/BoxMesh.cpp

dolfin/generation/Box.h => dolfin/generation/BoxMesh.h

dolfin/generation/Interval.cpp => dolfin/generation/IntervalMesh.cpp

dolfin/generation/Interval.h => dolfin/generation/IntervalMesh.h

dolfin/generation/Rectangle.cpp => dolfin/generation/RectangleMesh.cpp

dolfin/generation/Rectangle.h => dolfin/generation/RectangleMesh.h

dolfin/generation/UnitCircle.cpp => dolfin/generation/UnitCircleMesh.cpp

dolfin/generation/UnitCircle.h => dolfin/generation/UnitCircleMesh.h

dolfin/generation/UnitCube.cpp => dolfin/generation/UnitCubeMesh.cpp

dolfin/generation/UnitCube.h => dolfin/generation/UnitCubeMesh.h

dolfin/generation/UnitInterval.cpp => dolfin/generation/UnitIntervalMesh.cpp

dolfin/generation/UnitInterval.h => dolfin/generation/UnitIntervalMesh.h

dolfin/generation/UnitSquare.cpp => dolfin/generation/UnitSquareMesh.cpp

dolfin/generation/UnitSquare.h => dolfin/generation/UnitSquareMesh.h

dolfin/generation/UnitTetrahedron.cpp => dolfin/generation/UnitTetrahedronMesh.cpp

dolfin/generation/UnitTetrahedron.h => dolfin/generation/UnitTetrahedronMesh.h

dolfin/generation/UnitTriangle.cpp => dolfin/generation/UnitTriangleMesh.cpp

dolfin/generation/UnitTriangle.h => dolfin/generation/UnitTriangleMesh.h

dolfin/swig/modules/la/dependencies.txt => dolfin/swig/modules/la/dependencies.txt.moved

files modified:
AUTHORS

CMakeLists.txt

ChangeLog

INSTALL

bench/bench.py

bench/fem/assembly/cpp/forms.h

bench/fem/assembly/cpp/forms/Elasticity3D.h

bench/fem/assembly/cpp/forms/NSEMomentum3D.h

bench/fem/assembly/cpp/forms/Poisson2DP1.h

bench/fem/assembly/cpp/forms/Poisson2DP2.h

bench/fem/assembly/cpp/forms/Poisson2DP3.h

bench/fem/assembly/cpp/forms/StabStokes2D.h

bench/fem/assembly/cpp/forms/THStokes2D.h

bench/fem/convergence/cpp/forms/Poisson2D_1.h

bench/fem/convergence/cpp/forms/Poisson2D_2.h

bench/fem/convergence/cpp/forms/Poisson2D_3.h

bench/fem/convergence/cpp/forms/Poisson2D_4.h

bench/fem/convergence/cpp/forms/Poisson2D_5.h

bench/fem/convergence/cpp/forms/Poisson3D_1.h

bench/fem/convergence/cpp/forms/Poisson3D_2.h

bench/fem/convergence/cpp/forms/Poisson3D_3.h

bench/fem/convergence/cpp/forms/Poisson3D_4.h

bench/fem/convergence/cpp/forms/Poisson3D_5.h

bench/fem/convergence/cpp/main.cpp

bench/fem/multicore/cpp/NavierStokes.h

bench/fem/multicore/cpp/Poisson.h

bench/fem/multicore/cpp/main.cpp

bench/fem/speedup/cpp/Poisson.h

bench/fem/speedup/cpp/assemble-poisson.cpp

bench/fem/speedup/cpp/solve-poisson.cpp

bench/function/evaluation/cpp/P1.h

bench/function/evaluation/cpp/main.cpp

bench/mesh/iteration/cpp/main.cpp

bench/mesh/refinement/cpp/main.cpp

bench/mesh/topology/cpp/main.cpp

bench/mesh/unitcube/cpp/main.cpp

bench/plot.py

cmake/modules/FindCGAL.cmake

cmake/modules/FindCHOLMOD.cmake

cmake/modules/FindPaStiX.cmake

cmake/modules/FindSCOTCH.cmake

cmake/modules/FindTAO.cmake

cmake/scripts/generate-cmakefiles

cmake/scripts/generate-swig-interface

demo/la/eigenvalue/cpp/StiffnessMatrix.h

demo/la/eigenvalue/cpp/main.cpp

demo/la/eigenvalue/python/demo_eigenvalue.py

demo/pde/biharmonic/cpp/Biharmonic.h

demo/pde/biharmonic/cpp/documentation.rst

demo/pde/biharmonic/cpp/main.cpp

demo/pde/biharmonic/python/demo_biharmonic.py

demo/pde/biharmonic/python/documentation.rst

demo/pde/cahn-hilliard/cpp/CahnHilliard2D.cpp

demo/pde/cahn-hilliard/cpp/CahnHilliard2D.h

demo/pde/cahn-hilliard/cpp/CahnHilliard3D.cpp

demo/pde/cahn-hilliard/cpp/CahnHilliard3D.h

demo/pde/cahn-hilliard/cpp/documentation.rst

demo/pde/cahn-hilliard/cpp/main.cpp

demo/pde/cahn-hilliard/python/demo_cahn-hilliard.py

demo/pde/cahn-hilliard/python/documentation.rst

demo/pde/hyperelasticity/cpp/HyperElasticity.h

demo/pde/hyperelasticity/cpp/documentation.rst

demo/pde/hyperelasticity/cpp/main.cpp

demo/pde/hyperelasticity/python/demo_hyperelasticity.py

demo/pde/hyperelasticity/python/documentation.rst

demo/pde/mixed-poisson/cpp/MixedPoisson.h

demo/pde/mixed-poisson/cpp/main.cpp

demo/pde/mixed-poisson/python/demo_mixed-poisson.py

demo/pde/mixed-poisson/python/documentation.rst

demo/pde/navier-stokes/cpp/PressureUpdate.h

demo/pde/navier-stokes/cpp/TentativeVelocity.h

demo/pde/navier-stokes/cpp/VelocityUpdate.h

demo/pde/navier-stokes/cpp/documentation.rst

demo/pde/navier-stokes/cpp/main.cpp

demo/pde/poisson/cpp/Poisson.h

demo/pde/poisson/cpp/documentation.rst

demo/pde/poisson/cpp/main.cpp

demo/pde/poisson/python/demo_poisson.py

demo/pde/poisson/python/documentation.rst

demo/pde/stokes-iterative/cpp/Stokes.h

demo/pde/stokes-iterative/cpp/StokesPreconditioner.h

demo/pde/stokes-iterative/cpp/main.cpp

demo/pde/stokes-iterative/python/demo_stokes-iterative.py

demo/pde/stokes-iterative/python/documentation.rst

demo/pde/subdomains-poisson/python/demo_subdomains-poisson.py

demo/pde/subdomains-poisson/python/documentation.rst

demo/undocumented/adaptive-poisson/python/demo_adaptive-poisson.py

demo/undocumented/advection-diffusion/cpp/AdvectionDiffusion.h

demo/undocumented/advection-diffusion/cpp/Velocity.h

demo/undocumented/advection-diffusion/cpp/main.cpp

demo/undocumented/advection-diffusion/python/demo_advection-diffusion.py

demo/undocumented/ale/cpp/main.cpp

demo/undocumented/ale/python/demo_ale.py

demo/undocumented/auto-adaptive-navier-stokes/cpp/AdaptiveNavierStokes.h

demo/undocumented/auto-adaptive-navier-stokes/cpp/main.cpp

demo/undocumented/auto-adaptive-navier-stokes/python/demo_auto-adaptive-navier-stokes.py

demo/undocumented/auto-adaptive-poisson/cpp/AdaptivePoisson.h

demo/undocumented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl

demo/undocumented/auto-adaptive-poisson/cpp/main.cpp

demo/undocumented/auto-adaptive-poisson/python/demo_auto-adaptive-poisson.py

demo/undocumented/bcs/cpp/Poisson.h

demo/undocumented/block-matrix/cpp/StiffnessMatrix.h

demo/undocumented/block-matrix/cpp/main.cpp

demo/undocumented/block-matrix/python/demo_block-matrix.py

demo/undocumented/built-in/cpp/main.cpp

demo/undocumented/built-in/python/demo_built-in.py

demo/undocumented/coloring/cpp/main.cpp

demo/undocumented/coloring/python/demo_coloring.py

demo/undocumented/conditional/cpp/Conditional.h

demo/undocumented/conditional/cpp/main.cpp

demo/undocumented/conditional/python/demo_conditional.py

demo/undocumented/curl-curl/cpp/CurrentDensity.h

demo/undocumented/curl-curl/cpp/EddyCurrents.h

demo/undocumented/curl-curl/cpp/main.cpp

demo/undocumented/curl-curl/python/demo_curl-curl.py

demo/undocumented/dg-advection-diffusion/cpp/AdvectionDiffusion.h

demo/undocumented/dg-advection-diffusion/cpp/Projection.h

demo/undocumented/dg-advection-diffusion/cpp/Velocity.h

demo/undocumented/dg-poisson/cpp/Poisson.h

demo/undocumented/dg-poisson/cpp/main.cpp

demo/undocumented/dg-poisson/python/demo_dg-poisson.py

demo/undocumented/distancequeries/cpp/main.cpp

demo/undocumented/elasticity/cpp/Elasticity.h

demo/undocumented/elasticity/cpp/main.cpp

demo/undocumented/elastodynamics/cpp/DG0_eps_xx.h

demo/undocumented/elastodynamics/cpp/ElastoDynamics.h

demo/undocumented/elastodynamics/cpp/main.cpp

demo/undocumented/elastodynamics/python/demo_elastodynamics.py

demo/undocumented/entityintersection/cpp/main.cpp

demo/undocumented/entityintersection/python/demo_entityintersection.py

demo/undocumented/eval/cpp/Projection.h

demo/undocumented/eval/cpp/main.cpp

demo/undocumented/eval/python/demo_eval.py

demo/undocumented/extrapolation/cpp/P1.h

demo/undocumented/extrapolation/cpp/P2.h

demo/undocumented/extrapolation/cpp/main.cpp

demo/undocumented/extrapolation/python/demo2.py

demo/undocumented/extrapolation/python/demo_extrapolation.py

demo/undocumented/functional/cpp/EnergyNorm.h

demo/undocumented/functional/cpp/main.cpp

demo/undocumented/functional/python/demo_functional.py

demo/undocumented/interpolation/python/demo_interpolation.py

demo/undocumented/lift-drag/cpp/Drag.h

demo/undocumented/lift-drag/cpp/Lift.h

demo/undocumented/lift-drag/cpp/Pressure.h

demo/undocumented/lift-drag2/cpp/Functionals.h

demo/undocumented/mesh-generation/cpp/main.cpp

demo/undocumented/meshfunction-refinement/cpp/main.cpp

demo/undocumented/meshintersection/2D/cpp/CMakeLists.txt

demo/undocumented/meshintersection/2D/cpp/main.cpp

demo/undocumented/meshintersection/3D/cpp/CMakeLists.txt

demo/undocumented/meshintersection/3D/cpp/main.cpp

demo/undocumented/neumann-poisson/cpp/Poisson.h

demo/undocumented/neumann-poisson/cpp/main.cpp

demo/undocumented/neumann-poisson/python/demo_neumann-poisson.py

demo/undocumented/nonlinear-poisson/cpp/NonlinearPoisson.h

demo/undocumented/nonlinear-poisson/cpp/main.cpp

demo/undocumented/nonlinear-poisson/python/demo_nonlinear-poisson.py

demo/undocumented/nonmatching-interpolation/cpp/P1.h

demo/undocumented/nonmatching-interpolation/cpp/P3.h

demo/undocumented/nonmatching-interpolation/cpp/main.cpp

demo/undocumented/nonmatching-interpolation/python/demo_nonmatching-interpolation.py

demo/undocumented/nonmatching-projection/cpp/P1_projection.h

demo/undocumented/nonmatching-projection/cpp/P3.h

demo/undocumented/nonmatching-projection/cpp/main.cpp

demo/undocumented/nonmatching-projection/python/demo_nonmatching-projection.py

demo/undocumented/optimization/python/demo_optimization.py

demo/undocumented/periodic/cpp/Poisson.h

demo/undocumented/periodic/cpp/main.cpp

demo/undocumented/periodic/python/demo_periodic.py

demo/undocumented/plot/cpp/main.cpp

demo/undocumented/plot/python/demo_plot.py

demo/undocumented/poisson1D/cpp/Poisson.h

demo/undocumented/poisson1D/cpp/main.cpp

demo/undocumented/poisson1D/python/demo_poisson1D.py

demo/undocumented/projection-interpolation/python/demo_projection-interpolation.py

demo/undocumented/reaction-diffusion/cpp/ReactionDiffusion.h

demo/undocumented/reaction-diffusion/cpp/main.cpp

demo/undocumented/reaction-diffusion/python/demo_reaction-diffusion.py

demo/undocumented/refinement/cpp/main.cpp

demo/undocumented/refinement/python/demo_refinement.py

demo/undocumented/spatial-coordinates/cpp/SpatialCoordinates.h

demo/undocumented/spatial-coordinates/cpp/main.cpp

demo/undocumented/spatial-coordinates/python/demo_spatial-coordinates.py

demo/undocumented/stokes-mini/python/demo_stokes-mini.py

demo/undocumented/stokes-stabilized/cpp/Stokes.h

demo/undocumented/stokes-stabilized/cpp/main.cpp

demo/undocumented/stokes-stabilized/python/demo_stokes-stabilized.py

demo/undocumented/stokes-taylor-hood/cpp/Stokes.h

demo/undocumented/stokes-taylor-hood/cpp/main.cpp

demo/undocumented/stokes-taylor-hood/python/demo_stokes-taylor-hood.py

demo/undocumented/subdomains/cpp/main.cpp

demo/undocumented/subdomains/python/demo_subdomains.py

demo/undocumented/submesh/cpp/main.cpp

demo/undocumented/sym-dirichlet-bc/cpp/Poisson.h

demo/undocumented/sym-dirichlet-bc/cpp/main.cpp

demo/undocumented/sym-dirichlet-bc/python/demo_sym-dirichlet-bc.py

demo/undocumented/sym-dirichlet-bc/python/dg-demo.py

demo/undocumented/sym-dirichlet-bc/python/dg-speed-up-test.py

demo/undocumented/sym-dirichlet-bc/python/speed-up-test.py

demo/undocumented/tensor-weighted-poisson/python/generate_data.py

demo/undocumented/time-series/cpp/main.cpp

demo/undocumented/time-series/python/demo_time-series.py

demo/undocumented/trilinos/python/demo_trilinos.py

demo/undocumented/waveguide/cpp/Forms.h

demo/undocumented/waveguide/cpp/main.cpp

demo/undocumented/waveguide/python/demo_waveguide.py

dolfin/CMakeLists.txt

dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp

dolfin/adaptivity/AdaptiveLinearVariationalSolver.h

dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp

dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.h

dolfin/adaptivity/ErrorControl.cpp

dolfin/adaptivity/Extrapolation.cpp

dolfin/adaptivity/Extrapolation.h

dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp

dolfin/adaptivity/GenericAdaptiveVariationalSolver.h

dolfin/adaptivity/GoalFunctional.cpp

dolfin/adaptivity/GoalFunctional.h

dolfin/adaptivity/LocalAssembler.cpp

dolfin/adaptivity/LocalAssembler.h

dolfin/adaptivity/TimeSeries.cpp

dolfin/adaptivity/TimeSeries.h

dolfin/adaptivity/adapt.cpp

dolfin/adaptivity/adapt.h

dolfin/adaptivity/adaptivesolve.cpp

dolfin/adaptivity/marking.cpp

dolfin/ale/ALE.cpp

dolfin/ale/HarmonicSmoothing.cpp

dolfin/ale/Poisson1D.h

dolfin/ale/Poisson2D.h

dolfin/ale/Poisson3D.h

dolfin/common/Array.h

dolfin/common/Hierarchical.h

dolfin/common/IndexSet.h

dolfin/common/MPI.cpp

dolfin/common/MPI.h

dolfin/common/RangedIndexSet.h

dolfin/common/Set.h

dolfin/common/SubSystemsManager.cpp

dolfin/common/SubSystemsManager.h

dolfin/common/UniqueIdGenerator.cpp

dolfin/common/UniqueIdGenerator.h

dolfin/common/Variable.h

dolfin/common/init.cpp

dolfin/common/timing.cpp

dolfin/common/timing.h

dolfin/common/types.h

dolfin/common/utils.cpp

dolfin/common/utils.h

dolfin/fem/Assembler.cpp

dolfin/fem/Assembler.h

dolfin/fem/AssemblerBase.cpp

dolfin/fem/AssemblerBase.h

dolfin/fem/BasisFunction.h

dolfin/fem/BoundaryCondition.h

dolfin/fem/DirichletBC.cpp

dolfin/fem/DirichletBC.h

dolfin/fem/DofMap.cpp

dolfin/fem/DofMap.h

dolfin/fem/DofMapBuilder.cpp

dolfin/fem/DofMapBuilder.h

dolfin/fem/DomainAssigner.cpp

dolfin/fem/DomainAssigner.h

dolfin/fem/FiniteElement.cpp

dolfin/fem/FiniteElement.h

dolfin/fem/Form.cpp

dolfin/fem/Form.h

dolfin/fem/GenericDofMap.h

dolfin/fem/LinearTimeDependentProblem.cpp

dolfin/fem/LinearVariationalProblem.cpp

dolfin/fem/LinearVariationalSolver.cpp

dolfin/fem/NonlinearVariationalProblem.cpp

dolfin/fem/NonlinearVariationalSolver.cpp

dolfin/fem/NonlinearVariationalSolver.h

dolfin/fem/OpenMpAssembler.cpp

dolfin/fem/OpenMpAssembler.h

dolfin/fem/PeriodicBC.cpp

dolfin/fem/PeriodicBC.h

dolfin/fem/PointSource.cpp

dolfin/fem/SparsityPatternBuilder.cpp

dolfin/fem/SparsityPatternBuilder.h

dolfin/fem/SymmetricAssembler.cpp

dolfin/fem/SymmetricAssembler.h

dolfin/fem/SystemAssembler.cpp

dolfin/fem/SystemAssembler.h

dolfin/fem/UFC.cpp

dolfin/fem/UFC.h

dolfin/fem/UFCCell.h

dolfin/fem/UFCMesh.h

dolfin/fem/assemble.cpp

dolfin/fem/assemble.h

dolfin/fem/solve.cpp

dolfin/fem/solve.h

dolfin/function/CoefficientAssigner.cpp

dolfin/function/CoefficientAssigner.h

dolfin/function/Constant.cpp

dolfin/function/Constant.h

dolfin/function/Expression.cpp

dolfin/function/Expression.h

dolfin/function/Function.cpp

dolfin/function/Function.h

dolfin/function/FunctionSpace.cpp

dolfin/function/FunctionSpace.h

dolfin/function/GenericFunction.cpp

dolfin/function/GenericFunction.h

dolfin/function/SpecialFacetFunction.cpp

dolfin/function/SpecialFacetFunction.h

dolfin/function/SpecialFunctions.cpp

dolfin/function/SubSpace.cpp

dolfin/function/SubSpace.h

dolfin/generation/CGALMeshBuilder.h

dolfin/generation/PolygonalMeshGenerator.cpp

dolfin/generation/PolygonalMeshGenerator.h

dolfin/generation/PolyhedralMeshGenerator.cpp

dolfin/generation/PolyhedralMeshGenerator.h

dolfin/generation/Triangulate.cpp

dolfin/generation/Triangulate.h

dolfin/generation/dolfin_generation.h

dolfin/graph/BoostGraphInterface.cpp

dolfin/graph/BoostGraphInterface.h

dolfin/graph/BoostGraphOrdering.cpp

dolfin/graph/BoostGraphOrdering.h

dolfin/graph/GraphBuilder.cpp

dolfin/graph/GraphBuilder.h

dolfin/graph/GraphColoring.cpp

dolfin/graph/GraphColoring.h

dolfin/graph/GraphOrdering.cpp

dolfin/graph/GraphOrdering.h

dolfin/graph/ParMETIS.cpp

dolfin/graph/ParMETIS.h

dolfin/graph/SCOTCH.cpp

dolfin/graph/SCOTCH.h

dolfin/graph/ZoltanInterface.cpp

dolfin/graph/ZoltanInterface.h

dolfin/intersection/IntersectionOperator.cpp

dolfin/intersection/IntersectionOperator.h

dolfin/intersection/IntersectionOperatorImplementation.h

dolfin/intersection/MeshPrimitive.h

dolfin/io/BinaryFile.cpp

dolfin/io/BinaryFile.h

dolfin/io/Encoder.h

dolfin/io/File.cpp

dolfin/io/File.h

dolfin/io/GenericFile.cpp

dolfin/io/GenericFile.h

dolfin/io/HDF5File.cpp

dolfin/io/HDF5File.h

dolfin/io/HDF5Interface.cpp

dolfin/io/HDF5Interface.h

dolfin/io/RAWFile.cpp

dolfin/io/SAX2AttributeParser.h

dolfin/io/VTKFile.cpp

dolfin/io/VTKFile.h

dolfin/io/VTKWriter.cpp

dolfin/io/VTKWriter.h

dolfin/io/XDMFFile.cpp

dolfin/io/XDMFFile.h

dolfin/io/XMLArray.h

dolfin/io/XMLFile.cpp

dolfin/io/XMLFile.h

dolfin/io/XMLFunctionData.cpp

dolfin/io/XMLFunctionData.h

dolfin/io/XMLLocalMeshSAX.cpp

dolfin/io/XMLLocalMeshSAX.h

dolfin/io/XMLMesh.cpp

dolfin/io/XMLMesh.h

dolfin/io/XMLMeshFunction.h

dolfin/io/XMLMeshValueCollection.h

dolfin/io/XMLParameters.cpp

dolfin/io/XMLVector.cpp

dolfin/io/XMLVector.h

dolfin/io/XYZFile.cpp

dolfin/io/dolfin_io.h

dolfin/la/BlockMatrix.cpp

dolfin/la/BlockMatrix.h

dolfin/la/BlockVector.cpp

dolfin/la/BlockVector.h

dolfin/la/CholmodCholeskySolver.cpp

dolfin/la/CholmodCholeskySolver.h

dolfin/la/CoordinateMatrix.cpp

dolfin/la/CoordinateMatrix.h

dolfin/la/DefaultFactory.cpp

dolfin/la/DefaultFactory.h

dolfin/la/EpetraFactory.cpp

dolfin/la/EpetraFactory.h

dolfin/la/EpetraKrylovSolver.cpp

dolfin/la/EpetraKrylovSolver.h

dolfin/la/EpetraLUSolver.cpp

dolfin/la/EpetraLUSolver.h

dolfin/la/EpetraMatrix.cpp

dolfin/la/EpetraMatrix.h

dolfin/la/EpetraVector.cpp

dolfin/la/EpetraVector.h

dolfin/la/GenericLUSolver.h

dolfin/la/GenericLinearAlgebraFactory.h

dolfin/la/GenericLinearOperator.h

dolfin/la/GenericLinearSolver.h

dolfin/la/GenericMatrix.cpp

dolfin/la/GenericMatrix.h

dolfin/la/GenericSparsityPattern.h

dolfin/la/GenericTensor.h

dolfin/la/GenericVector.h

dolfin/la/KrylovSolver.cpp

dolfin/la/KrylovSolver.h

dolfin/la/LUSolver.cpp

dolfin/la/LUSolver.h

dolfin/la/LinearOperator.cpp

dolfin/la/LinearOperator.h

dolfin/la/LinearSolver.cpp

dolfin/la/LinearSolver.h

dolfin/la/MUMPSLUSolver.cpp

dolfin/la/MUMPSLUSolver.h

dolfin/la/Matrix.h

dolfin/la/PETScBaseMatrix.cpp

dolfin/la/PETScBaseMatrix.h

dolfin/la/PETScCuspFactory.cpp

dolfin/la/PETScCuspFactory.h

dolfin/la/PETScFactory.cpp

dolfin/la/PETScFactory.h

dolfin/la/PETScKrylovSolver.cpp

dolfin/la/PETScKrylovSolver.h

dolfin/la/PETScLUSolver.cpp

dolfin/la/PETScLUSolver.h

dolfin/la/PETScLinearOperator.cpp

dolfin/la/PETScLinearOperator.h

dolfin/la/PETScMatrix.cpp

dolfin/la/PETScMatrix.h

dolfin/la/PETScObject.h

dolfin/la/PETScPreconditioner.cpp

dolfin/la/PETScPreconditioner.h

dolfin/la/PETScUserPreconditioner.cpp

dolfin/la/PETScVector.cpp

dolfin/la/PETScVector.h

dolfin/la/PaStiXLUSolver.cpp

dolfin/la/PaStiXLUSolver.h

dolfin/la/SLEPcEigenSolver.cpp

dolfin/la/SLEPcEigenSolver.h

dolfin/la/STLFactory.h

dolfin/la/STLFactoryCSC.h

dolfin/la/STLMatrix.cpp

dolfin/la/STLMatrix.h

dolfin/la/Scalar.h

dolfin/la/SparsityPattern.cpp

dolfin/la/SparsityPattern.h

dolfin/la/TAOLinearBoundSolver.cpp

dolfin/la/TAOLinearBoundSolver.h

dolfin/la/TensorLayout.cpp

dolfin/la/TensorLayout.h

dolfin/la/TensorProductMatrix.cpp

dolfin/la/TensorProductMatrix.h

dolfin/la/TensorProductVector.cpp

dolfin/la/TensorProductVector.h

dolfin/la/TrilinosPreconditioner.cpp

dolfin/la/TrilinosPreconditioner.h

dolfin/la/UmfpackLUSolver.cpp

dolfin/la/UmfpackLUSolver.h

dolfin/la/Vector.h

dolfin/la/dolfin_la.h

dolfin/la/solve.cpp

dolfin/la/solve.h

dolfin/la/uBLASFactory.h

dolfin/la/uBLASILUPreconditioner.cpp

dolfin/la/uBLASILUPreconditioner.h

dolfin/la/uBLASKrylovSolver.cpp

dolfin/la/uBLASKrylovSolver.h

dolfin/la/uBLASLinearOperator.cpp

dolfin/la/uBLASLinearOperator.h

dolfin/la/uBLASMatrix.h

dolfin/la/uBLASVector.cpp

dolfin/la/uBLASVector.h

dolfin/log/LogManager.h

dolfin/log/LogStream.cpp

dolfin/log/LogStream.h

dolfin/log/Logger.cpp

dolfin/log/Logger.h

dolfin/log/Progress.h

dolfin/log/Table.cpp

dolfin/log/Table.h

dolfin/log/log.cpp

dolfin/log/log.h

dolfin/math/Lagrange.cpp

dolfin/math/Lagrange.h

dolfin/math/Legendre.cpp

dolfin/math/Legendre.h

dolfin/math/basic.cpp

dolfin/math/basic.h

dolfin/mesh/BoundaryComputation.cpp

dolfin/mesh/BoundaryComputation.h

dolfin/mesh/BoundaryMesh.cpp

dolfin/mesh/BoundaryMesh.h

dolfin/mesh/Cell.h

dolfin/mesh/CellType.cpp

dolfin/mesh/CellType.h

dolfin/mesh/DynamicMeshEditor.cpp

dolfin/mesh/DynamicMeshEditor.h

dolfin/mesh/Edge.cpp

dolfin/mesh/Edge.h

dolfin/mesh/Face.cpp

dolfin/mesh/Face.h

dolfin/mesh/Facet.cpp

dolfin/mesh/Facet.h

dolfin/mesh/FacetCell.cpp

dolfin/mesh/FacetCell.h

dolfin/mesh/IntervalCell.cpp

dolfin/mesh/IntervalCell.h

dolfin/mesh/LocalMeshData.cpp

dolfin/mesh/LocalMeshData.h

dolfin/mesh/LocalMeshValueCollection.h

dolfin/mesh/Mesh.cpp

dolfin/mesh/Mesh.h

dolfin/mesh/MeshColoring.cpp

dolfin/mesh/MeshColoring.h

dolfin/mesh/MeshConnectivity.cpp

dolfin/mesh/MeshConnectivity.h

dolfin/mesh/MeshData.cpp

dolfin/mesh/MeshData.h

dolfin/mesh/MeshDistributed.cpp

dolfin/mesh/MeshDistributed.h

dolfin/mesh/MeshDomains.cpp

dolfin/mesh/MeshDomains.h

dolfin/mesh/MeshEditor.cpp

dolfin/mesh/MeshEditor.h

dolfin/mesh/MeshEntity.cpp

dolfin/mesh/MeshEntity.h

dolfin/mesh/MeshEntityIterator.h

dolfin/mesh/MeshEntityIteratorBase.h

dolfin/mesh/MeshFunction.cpp

dolfin/mesh/MeshFunction.h

dolfin/mesh/MeshGeometry.cpp

dolfin/mesh/MeshGeometry.h

dolfin/mesh/MeshOrdering.cpp

dolfin/mesh/MeshPartitioning.cpp

dolfin/mesh/MeshPartitioning.h

dolfin/mesh/MeshRenumbering.cpp

dolfin/mesh/MeshRenumbering.h

dolfin/mesh/MeshSmoothing.cpp

dolfin/mesh/MeshSmoothing.h

dolfin/mesh/MeshTopology.cpp

dolfin/mesh/MeshTopology.h

dolfin/mesh/MeshTransformation.cpp

dolfin/mesh/MeshTransformation.h

dolfin/mesh/MeshValueCollection.h

dolfin/mesh/Point.cpp

dolfin/mesh/Point.h

dolfin/mesh/PointCell.cpp

dolfin/mesh/PointCell.h

dolfin/mesh/SubDomain.cpp

dolfin/mesh/SubDomain.h

dolfin/mesh/SubMesh.cpp

dolfin/mesh/SubMesh.h

dolfin/mesh/SubsetIterator.h

dolfin/mesh/TetrahedronCell.cpp

dolfin/mesh/TetrahedronCell.h

dolfin/mesh/TopologyComputation.cpp

dolfin/mesh/TopologyComputation.h

dolfin/mesh/TriangleCell.cpp

dolfin/mesh/TriangleCell.h

dolfin/mesh/Vertex.h

dolfin/mesh/dolfin_mesh.h

dolfin/nls/NewtonSolver.cpp

dolfin/nls/NewtonSolver.h

dolfin/nls/PETScSNESSolver.cpp

dolfin/nls/PETScSNESSolver.h

dolfin/parameter/GlobalParameters.cpp

dolfin/parameter/GlobalParameters.h

dolfin/parameter/Parameter.cpp

dolfin/parameter/Parameter.h

dolfin/parameter/Parameters.cpp

dolfin/parameter/Parameters.h

dolfin/plot/ExpressionWrapper.h

dolfin/plot/GenericVTKPlottable.h

dolfin/plot/VTKPlottableGenericFunction.cpp

dolfin/plot/VTKPlottableGenericFunction.h

dolfin/plot/VTKPlottableMesh.cpp

dolfin/plot/VTKPlottableMesh.h

dolfin/plot/VTKPlottableMeshFunction.h

dolfin/plot/VTKPlotter.cpp

dolfin/plot/VTKPlotter.h

dolfin/plot/plot.cpp

dolfin/plot/plot.h

dolfin/quadrature/BarycenterQuadrature.h

dolfin/refinement/BisectionRefinement.cpp

dolfin/refinement/BisectionRefinement.h

dolfin/refinement/LocalMeshCoarsening.cpp

dolfin/refinement/LocalMeshCoarsening.h

dolfin/refinement/LocalMeshRefinement.cpp

dolfin/refinement/RegularCutRefinement.cpp

dolfin/refinement/RegularCutRefinement.h

dolfin/refinement/RivaraRefinement.cpp

dolfin/refinement/RivaraRefinement.h

dolfin/refinement/UniformMeshRefinement.cpp

dolfin/swig/adaptivity/docstrings.i

dolfin/swig/adaptivity/pre.i

dolfin/swig/common/docstrings.i

dolfin/swig/common/post.i

dolfin/swig/common/pre.i

dolfin/swig/fem/docstrings.i

dolfin/swig/fem/post.i

dolfin/swig/fem/pre.i

dolfin/swig/forwarddeclarations.i

dolfin/swig/function/docstrings.i

dolfin/swig/function/post.i

dolfin/swig/function/pre.i

dolfin/swig/generation/docstrings.i

dolfin/swig/graph/docstrings.i

dolfin/swig/intersection/docstrings.i

dolfin/swig/io/docstrings.i

dolfin/swig/io/post.i

dolfin/swig/la/Indices.i

dolfin/swig/la/docstrings.i

dolfin/swig/la/la_get_set_items.i

dolfin/swig/la/post.i

dolfin/swig/la/pre.i

dolfin/swig/log/docstrings.i

dolfin/swig/log/pre.i

dolfin/swig/math/docstrings.i

dolfin/swig/mesh/docstrings.i

dolfin/swig/mesh/post.i

dolfin/swig/mesh/pre.i

dolfin/swig/modules/common/dependencies.txt

dolfin/swig/modules/fem/dependencies.txt

dolfin/swig/modules/fem/module.i

dolfin/swig/modules/function/dependencies.txt

dolfin/swig/modules/function/module.i

dolfin/swig/modules/io/dependencies.txt

dolfin/swig/modules/io/module.i

dolfin/swig/modules/la/module.i

dolfin/swig/modules/mesh/dependencies.txt

dolfin/swig/modules/mesh/module.i

dolfin/swig/nls/docstrings.i

dolfin/swig/parameter/docstrings.i

dolfin/swig/parameter/pre.i

dolfin/swig/plot/docstrings.i

dolfin/swig/shared_ptr_classes.i

dolfin/swig/typemaps/array.i

dolfin/swig/typemaps/numpy.i

dolfin/swig/typemaps/primitives.i

dolfin/swig/typemaps/std_map.i

dolfin/swig/typemaps/std_pair.i

dolfin/swig/typemaps/std_set.i

dolfin/swig/typemaps/std_vector.i

site-packages/dolfin/__init__.py

site-packages/dolfin/common/plotting.py

site-packages/dolfin/compilemodules/compilemodule.py

site-packages/dolfin/compilemodules/swigimportinfo.py

site-packages/dolfin/fem/adaptivesolving.py

site-packages/dolfin/fem/assembling.py

site-packages/dolfin/fem/bcs.py

site-packages/dolfin/fem/formmanipulations.py

site-packages/dolfin/fem/solving.py

site-packages/dolfin/functions/function.py

site-packages/dolfin/functions/functionspace.py

site-packages/dolfin/importhandler/__init__.py

site-packages/dolfin_utils/meshconvert/meshconvert.py

site-packages/dolfin_utils/meshconvert/xml_writer.py

site-packages/dolfin_utils/wrappers/form.py

site-packages/dolfin_utils/wrappers/functionspace.py

site-packages/dolfin_utils/wrappers/goalfunctional.py

site-packages/dolfin_utils/wrappers/includes.py

site-packages/dolfin_utils/wrappers/wrappers.py

test/regression/test.py

test/system/parallel-assembly-solve/solver.py

test/system/ufl-jit-assemble-chain/assembly_derivatives.py

test/system/ufl-jit-assemble-chain/form_operations.py

test/unit/adaptivity/python/TimeSeries.py

test/unit/adaptivity/python/errorcontrol.py

test/unit/book/python/chapter_10.py

test/unit/book/python/chapter_1_files/stationary/nonlinear_poisson/vp1_np.py

test/unit/book/python/chapter_1_files/stationary/nonlinear_poisson/vp2_np.py

test/unit/book/python/chapter_1_files/stationary/poisson/dn4_p2D.py

test/unit/book/python/chapter_1_files/stationary/poisson/dnr_p2D.py

test/unit/book/python/chapter_1_files/stationary/poisson/mat2_p2D.py

test/unit/book/python/chapter_1_files/stationary/poisson/mat2x_p2D.py

test/unit/book/python/chapter_1_files/stationary/poisson/membrane1v.py

test/unit/book/python/chapter_1_files/transient/diffusion/sin_daD.py

test/unit/book/python/mesh.xml

test/unit/fem/python/Assembler.py

test/unit/fem/python/DirichletBC.py

test/unit/fem/python/DofMap.py

test/unit/fem/python/FiniteElement.py

test/unit/fem/python/Form.py

test/unit/fem/python/PeriodicBC.py

test/unit/fem/python/SymmetricAssembler.py

test/unit/fem/python/SystemAssembler.py

test/unit/fem/python/solving.py

test/unit/function/cpp/Expression.cpp

test/unit/function/cpp/Projection.h

test/unit/function/python/Constant.py

test/unit/function/python/Expression.py

test/unit/function/python/Function.py

test/unit/function/python/FunctionSpace.py

test/unit/function/python/SpecialFunctions.py

test/unit/intersection/cpp/IntersectionOperator.cpp

test/unit/io/cpp/XMLMeshValueCollection.cpp

test/unit/io/python/HDF5.py

test/unit/io/python/XDMF.py

test/unit/io/python/XMLMesh.py

test/unit/io/python/XMLMeshFunction.py

test/unit/io/python/XMLMeshValueCollection.py

test/unit/io/python/vtk.py

test/unit/jit/python/test.py

test/unit/la/cpp/LinearOperator.cpp

test/unit/la/cpp/forms/ReactionDiffusion.h

test/unit/la/cpp/forms/ReactionDiffusionAction.h

test/unit/la/python/KrylovSolver.py

test/unit/la/python/LinearOperator.py

test/unit/la/python/Matrix.py

test/unit/la/python/Vector.py

test/unit/la/python/test.py

test/unit/mesh/cpp/Mesh.cpp

test/unit/mesh/cpp/MeshValueCollection.cpp

test/unit/mesh/python/BoundaryMesh.py

test/unit/mesh/python/Edge.py

test/unit/mesh/python/Face.py

test/unit/mesh/python/Mesh.py

test/unit/mesh/python/MeshData.py

test/unit/mesh/python/MeshFunction.py

test/unit/mesh/python/MeshIterator.py

test/unit/mesh/python/MeshMarkers.py

test/unit/mesh/python/MeshTransformation.py

test/unit/mesh/python/MeshValueCollection.py

test/unit/meshconvert/python/test.py

test/unit/parameter/cpp/Parameters.cpp

test/unit/python-extras/python/test.py

test/unit/quadrature/cpp/BaryCenter.cpp

test/unit/refinement/python/refine.py

test/unit/test.py

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test/system/parallel-assembly-solve/solver.py

103

("4x4x4 unit cube", 4): 74.49938266409099 }

104

105

# Mesh files and degrees to check

106

meshes= [(UnitSquare(16, 16), "16x16 unit square"),\

107

(UnitCube(4, 4, 4), "4x4x4 unit cube")]

106

meshes= [(UnitSquareMesh(16, 16), "16x16 unit square"),\

107

(UnitCubeMesh(4, 4, 4), "4x4x4 unit cube")]

108

degrees = [1, 2, 3, 4]

109

110

## Iterate over test cases and collect results

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