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  • Committer: Bazaar Package Importer
  • Author(s): Andreas Tille
  • Date: 2011-03-12 00:02:43 UTC
  • mfrom: (1.1.7 upstream)
  • Revision ID: james.westby@ubuntu.com-20110312000243-1yx6ho40e2kf9nxw
Tags: 6.850-1
* New upstream version
* Adapted patch to new upstream
* Debhelper 8 (control + compat)
* debian/rules: Switch to dh
* debian/links: override broken symlinks created in Makefile

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core/dummy.c
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#include "mltaln.h"
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#define ALNLEN 1e5
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int main()
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{
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        int res;
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        static int nlen[M];
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        static char name[M][B];
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        static char **seq;
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        seq = AllocateCharMtx( 2, ALNLEN );
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        njob = 2;
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        strcpy( name[0], ">name1" );
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        strcpy( name[1], ">name2" );
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        strcpy( seq[0], "atgcctaatgccgta" );
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        strcpy( seq[1], "atgccgtaatgccgta" );
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        nlen[0] = strlen( seq[0] );
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        nlen[1] = strlen( seq[1] );
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        nlenmax = MAX( nlen[0], nlen[1] );
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        dorp = 'd';
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        scoremtx = -1;
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        res = disttbfast( seq, nlen, name );
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        fprintf( stdout, "%s\n", name[0] );
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        fprintf( stdout, "%s\n", seq[0] );
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        fprintf( stdout, "%s\n", name[1] );
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        fprintf( stdout, "%s\n", seq[1] );
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        return( res );
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}