~ubuntu-branches/debian/sid/mafft/sid

Committer: Bazaar Package Importer
Author(s): Andreas Tille
Date: 2011-03-12 00:02:43 UTC
mfrom: (1.1.7 upstream)
Revision ID: james.westby@ubuntu.com-20110312000243-1yx6ho40e2kf9nxw

Tags: 6.850-1

* New upstream version
* Adapted patch to new upstream
* Debhelper 8 (control + compat)
* debian/rules: Switch to dh
* debian/links: override broken symlinks created in Makefile

files added:
core/patch

core/replaceu.c

core/restoreu.c

files removed:
core/MSalign11.c.m

core/Qalignmm.c.better

core/Qalignmm.c.chukan

core/Qalignmm.c.er

core/Salignmm.c.work

core/changelog

core/dummy.c

core/io.c.fast

core/lsresult

core/pscoffee

core/pscoffee.tmpl

core/splittbfast.c.diana

core/splittbfast.c.equi

core/splittbfast.c.yugo

files modified:
.pc/20_manpages_are_no_binaries.patch/core/Makefile

core/Falign.c

core/Makefile

core/contrafoldwrap.c

core/f2cl.c

core/functions.h

core/io.c

core/mafft-profile.c

core/mafft.1

core/mafft.tmpl

core/mccaskillwrap.c

core/mltaln.h

core/mltaln9.c

core/pairash.c

core/pairlocalalign.c

core/regtable2seq.c

core/rna.c

core/seq2regtable.c

core/splittbfast.c

core/tbfast.c

core/tditeration.c

core/univscript.tmpl

debian/changelog

debian/compat

debian/control

debian/links

debian/patches/20_manpages_are_no_binaries.patch

debian/rules

readme

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added added

removed removed

core/mafft-profile.c

char **arguments( int argc, char *argv[] )

{

int c;

int c = 0;

fmodel = 0;

nblosum = 62;

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