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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2007-09-21 22:52:22 UTC
  • mfrom: (1.2.2 upstream)
  • Revision ID: james.westby@ubuntu.com-20070921225222-tt20m2yy6ycuy2d8
Tags: 1.5.2.102-1
* Developer release.
* Upgraded source package to debhelper 5 and standards-version 3.7.2.
* Added libmodule-build-perl and libtest-harness-perl to
  build-depends-indep.
* Disabled automatic CRAN download.
* Using quilt instead of .diff.gz to manage modifications.
* Updated Recommends list for the binary package.
* Moved the "production-quality" scripts to /usr/bin/.
* New maintainer: Debian-Med packaging team mailing list.
* New uploaders: Charles Plessy and Steffen Moeller.
* Updated Depends, Recommends and Suggests.
* Imported in Debian-Med's SVN repository on Alioth.
* Executing the regression tests during package building.
* Moved the Homepage: field out from the package's description.
* Updated watch file.

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scripts/biographics/bp_glyphs2-demo.PLS
 
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#!/usr/bin/perl
 
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#Wed Sep  1 18:54:18 EDT 2004
 
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#Simon Ilyushchenko - demonstrating several new glyphs for gbrowse, part 2.
 
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use strict;
 
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use Bio::Graphics::Panel;
 
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=head1 NAME
 
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bp_glyphs2-demo.pl - Second demo of Bio::Graphics glyphs
 
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=head1 SYNOPSIS
 
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  % bp_glyphs2-demo.pl | display -
 
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=head1 DESCRIPTION
 
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Generates a PNG image of some of the more esoteric Bio::Graphics glyphs.
 
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=head1 SEE ALSO
 
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L<Bio::Graphics>, the BioGraphics HOWTO.
 
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=head1 AUTHOR
 
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Simon Ilyushchenko
 
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Copyright (c) 2004 Cold Spring Harbor Laboratory
 
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This library is free software; you can redistribute it and/or modify
 
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it under the same terms as Perl itself.  See DISCLAIMER.txt for
 
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disclaimers of warranty.
 
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=cut
 
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my $ftr = 'Bio::Graphics::Feature';
 
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my $segment = $ftr->new(-start=>1,-end=>400,-name=>'ZK154',-type=>'clone');
 
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my $subseg1 = $ftr->new(-start=>100,-end=>300,-name=>'glyphs 2');
 
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my $panel = Bio::Graphics::Panel->new(
 
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                    -grid => 1,
 
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                    -segment => $segment,
 
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                    -key_style => 'bottom');
 
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$subseg1->name('dumbbell - arrows with arc ');
 
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$panel->add_track(segments=>[$subseg1],
 
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            -label => 1,
 
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                        -width => 50,
 
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                        -height => 30,
 
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                        -arc => 1,
 
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                        -shape_size => 20,
 
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                        -fgcolor => 'crimson',
 
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                        -end_shape => "arrow",
 
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                        -glyph => 'dumbbell');
 
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$subseg1->name('dumbbell - wave ');
 
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$panel->add_track(segments=>[$subseg1],
 
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            -label => 1,
 
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                        -shape_size => 20,
 
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                        -end_shape => "wave",
 
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                        -height => 20,
 
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                        -fgcolor => 'green',
 
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                        -glyph => 'dumbbell');
 
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$subseg1->name('two bolts');
 
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$panel->add_track(segments=>[$subseg1],
 
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            -label => 1,
 
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                        -shape_size => 40,
 
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                        -bolt_color => 'violet',
 
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                        -height => 20,
 
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                        -glyph => 'two_bolts');
 
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$subseg1->name('wave');
 
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$panel->add_track(segments=>[$subseg1],
 
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            -label => 1,
 
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                        -height => 10,
 
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                        -circle => 1,
 
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                        -glyph => 'wave');
 
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$subseg1->name('broken line');
 
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$panel->add_track(segments=>[$subseg1],
 
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            -label => 1,
 
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                        -height => 20,
 
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                        -glyph => 'broken_line');
 
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$subseg1->name('tic_tac_toe');
 
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$panel->add_track(segments=>[$subseg1],
 
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            -label => 1,
 
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                        -height => 20,
 
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                        -glyph => 'tic_tac_toe');
 
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$subseg1->name('text_in_box');
 
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$panel->add_track(segments=>[$subseg1],
 
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            -label => 1,
 
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                        -height => 20,
 
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                        -text_bgcolor => 'yellow',
 
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                        -glyph => 'text_in_box');
 
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$subseg1->name('christmas arrow');
 
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$panel->add_track(segments=>[$subseg1],
 
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            -label => 1,
 
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                        -height => 20,
 
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                        -fgcolor => 'steelblue',
 
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                        -glyph => 'christmas_arrow');
 
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$subseg1->name('pentagram');
 
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$panel->add_track(segments=>[$subseg1],
 
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            -label => 1,
 
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                        -height => 20,
 
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                        -glyph => 'pentagram');
 
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$subseg1->name('weighted arrow');
 
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$panel->add_track(segments=>[$subseg1],
 
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            -label => 1,
 
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                        -height => 20,
 
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                        -fgcolor => 'sienna',
 
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                        -glyph => 'weighted_arrow');
 
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open OUT,">glyphs2.png" or die "Couldn't open glyphs2.png for writing: $!";
 
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print OUT $panel->gd->png;
 
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close OUT;
 
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