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# Some useful automake documentation:
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# http://www.openismus.com/documents/linux/automake/automake.shtml
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# http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html
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# LDADD = foofiles/libfoo.a
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AM_CXXFLAGS = -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 @OPENMP_CXXFLAGS@ @AM_CXXFLAGS@
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noinst_LTLIBRARIES = libhhalign.la
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libhhalign_la_SOURCES = hhalign.cpp hhalign.h \
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hash-C.h hash.h hhdecl-C.h hhfunc-C.h hhfunc.h \
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hhmatrices-C.h hhutil-C.h \
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hhalignment-C.h hhalignment.h \
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hhfullalignment-C.h hhfullalignment.h \
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hhhalfalignment-C.h hhhalfalignment.h \
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hhhit-C.h hhhit.h hhhitlist-C.h hhhitlist.h \
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util-C.h list-C.h list.h \
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library_includedir=$(includedir)/clustalo/hhalign
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library_include_HEADERS = general.h hhfunc.h