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Beta Release 0.5.9 (24 January, 2011)
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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* Feature: barcode support via the `-B' option.
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* Feature: Illumina 1.3+ read format support via the `-I' option.
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* Bugfix: RG tags are not attached to unmapped reads.
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* Bugfix: very rare bwasw mismappings
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* Recommend options for PacBio reads in bwasw help message.
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Also, since January 13, the BWA master repository has been moved to github:
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https://github.com/lh3/bwa
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The revision number has been reset. All recent changes will be first
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committed to this repository.
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(0.5.9: 24 January 2011, r16)
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Beta Release Candidate 0.5.9rc1 (10 December, 2010)
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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Notable changes in bwasw:
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* Output unmapped reads.
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* For a repetitive read, choose a random hit instead of a fixed
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one. This is not well tested.
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Notable changes in bwa-short:
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* Fixed a bug in the SW scoring system, which may lead to unexpected
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gaps towards the end of a read.
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* Fixed a bug which invalidates the randomness of repetitive reads.
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* Fixed a rare memory leak.
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* Allowed to specify the read group at the command line.
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* Take name-grouped BAM files as input.
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Changes to this release are usually safe in that they do not interfere
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with the key functionality. However, the release has only been tested on
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small samples instead of on large-scale real data. If anything weird
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happens, please report the bugs to the bio-bwa-help mailing list.
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(0.5.9rc1: 10 December 2010, r1561)
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Beta Release 0.5.8 (8 June, 2010)
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
added
removed
NEWS
