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PAML (for Phylogentic Analysis by Maximum Likelihood) contains a few
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programs for model fitting and phylogenetic tree reconstruction using
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nucleotide or amino-acid sequence data. ANSI C source codes as well
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as Win32 and MC OSX excutables are distributed. Win32 executables are
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in the folder bin. Type, say,
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to run the codeml program. For UNIX and OS-X systems, go to the src/
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folder to compile the programs: "cd src" and then "make".
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The documentation is in doc/pamlDOC.pdf. The program web page is the
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following, where the archive can be downloaded:
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http://abacus.gene.ucl.ac.uk/software/paml.html
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PAML is distributed free of charge for academic use only.
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Department of Biology Phone: (+44) (0)20 7679 4379
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University College London Fax: (+44) (0)20 7679 7096
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Darwin Building Email: z.yang @ ucl.ac.uk