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Viewing changes to examples/CladeModelCD/Dataset2.CladeD/ECP_EDN_17.nuc

  • Committer: Bazaar Package Importer
  • Author(s): Pjotr Prins
  • Date: 2010-09-11 23:01:37 UTC
  • Revision ID: james.westby@ubuntu.com-20100911230137-jjf5d0blx5p0m9ba
Tags: upstream-4.4c
ImportĀ upstreamĀ versionĀ 4.4c

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Lines of Context:
 
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17   483
 
2
 
 
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Gorilla_EDN
 
4
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
5
GCTTCTGGCTGTGGAGGGCTCACTCCATGTCAAACCTCCACAGTTTACCT
 
6
GGGCTCAATGGTTTGAAACCCAGCACATCAATATGACATCCCAGCAATGC
 
7
ACCAATGCAATGCAGGTCATTAACAATTATCAACGGCGATGCAAAAACCA
 
8
AAATACTTTCCTTCTTACAACTTTTGCTAACGTAGTTAATGTTTGTGGTA
 
9
ACCCAAATATGACCTGTCCTAGTAACAAAACTTGCAAAAATTGTCATCAA
 
10
AGTGGAAGCCAGGTGCCTTTAATCCACTGTAACCTCACAACTCCAAGTCC
 
11
ACAGAATATTTCAAACTGCAGGTATGCGCAGACACCAGCAAACATGTTCT
 
12
ATATAGTTGCATGTGACAACAGAGATCAACGACGGGACCCTCCACAGTAT
 
13
CCGGTGGTTCCAGTTCACCTGGATAGAATCATC
 
14
Human_EDN
 
15
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
16
GCTTCTGGCTGTGGAGGGCTCACTCCATGTCAAACCTCCACAGTTTACCT
 
17
GGGCTCAATGGTTTGAAACCCAGCACATCAATATGACCTCCCAGCAATGC
 
18
ACCAATGCAATGCAGGTCATTAACAATTATCAACGGCGATGCAAAAACCA
 
19
AAATACTTTCCTTCTTACAACTTTTGCTAACGTAGTTAATGTTTGTGGTA
 
20
ACCCAAATATGACCTGTCCTAGTAACAAAACTCGCAAAAATTGTCACCAC
 
21
AGTGGAAGCCAGGTGCCTTTAATCCACTGTAACCTCACAACTCCAAGTCC
 
22
ACAGAATATTTCAAACTGCAGGTATGCGCAGACACCAGCAAACATGTTCT
 
23
ATATAGTTGCATGTGACAACAGAGATCAACGACGAGACCCTCCACAGTAT
 
24
CCGGTGGTTCCAGTTCACCTGGATAGAATCATC
 
25
Chimp_EDN
 
26
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
27
GCTTCTGGCAGTGGAGGGCTCACTCCATGTCAAACCTCCACAGTTTACCT
 
28
GGGCTCAATGGTTTGAAACCCAGCACATCAATATGACCTCCCAGCAATGC
 
29
ACCAATGCAATGCGGGTCATTAACAATTATCAACGGCGATGCAAAAACCA
 
30
AAATACTTTCCTTCTTACAACTTTTGCTAACGTAGTTAATGTTTGTGGTA
 
31
ACCCAAATATGACCTGTCCTAGTAACAAAACTCGCAAAAATTGTCATCAC
 
32
AGTGGAAGCCAGGTGCCTTTAATCCACTGTAACCTCACAACTCCAAGTCC
 
33
ACAGAATATTTCAAACTGCAGGTATGCGCAGACACCAGCAAACATGTTCT
 
34
ATATAGTTGCATGTGACAACAGAGATCAACGACGGGACCCTCCACAGTAT
 
35
CCAGTGGTTCCAGTTCACCTGGATAGAATCATC
 
36
Orang_EDN
 
37
ATGGTTCCAAAACTGTTCACTTCTCAAATTTCCCTGCTTCTTCTGTTGGG
 
38
GCTTCTGGCTGTGGACGGCTCACTCCATGTCAAACCTCCACAGTTTACCT
 
39
GGGCTCAATGGTTTGAAACCCAGCACATCAATATGACCTCCCAGCAATGC
 
40
AACAATGCAATGCAGGTCATTAACAATTTTCAACGGCGTTGCAAAAACCA
 
41
AAATACTTTTCTGCGTACAACTTTTGCTAATGTAGTTAATGTTTGTGGTA
 
42
ACCCAAATATAACCTGTCCTAGTAACAGAAGTCGCAACAATTGTCATCAT
 
43
AGTGGAGTCCAGGTGCCTTTAATCCACTGTAACCTCACAACTCCAAGTCC
 
44
ACAGAATATTTCAAACTGCAGGTATGCGCAGACACCAGCAAACATGTTCT
 
45
ATATAGTTGCATGTGACAACAGGGATCCACGACGGGACCCTCCACAGTAT
 
46
CCGGTGGTTCCAGTTCACCTGGATAGAATCATC
 
47
Hylobates_EDN
 
48
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
49
GCTTATGGGTGTGGAGGGCTCACTCCATGCCAAACCCCAACAGTTTACCT
 
50
GGGCTCAGTGGTTTGAAATCCAGCACATCAATATGACCTCCCAGCAATGC
 
51
ACCAATGCAATGCGGGTCATTAACAATTATCAACGGCGATGCAAAAACCA
 
52
AAATACTTTTCTTCGTACCACTTTTGCTAATGTAGTTAATGTTTGTGGTA
 
53
ACCCAAATATGACATGTCCTAGTAACAAAACTCGCAAAAATTGTCATCAA
 
54
AGTGGAAGCCAGGTGCCTTTAATCCACTGTAACCTCACAACTCCAAGTCC
 
55
ACAGAATATTTCAAACTGCGGGTATGCGCAGACACCAGCAAACATGTTCT
 
56
ATATAGTTGCATGTGACAACAGAGATCAACGACGGGACCCTCCACAGTAT
 
57
CCAGTAGTTCCGGTTCACCTGGATAGAATCATC
 
58
Macaq2_EDN
 
59
ATGGTTCCAAAACTGTTCACTTCCCCAATTTGTCTGCTTCTTCTGTTGGG
 
60
GCTTATGGGTGTGGAAGGCTCACTTCATGCCAAACCCAGACAATTTACCT
 
61
GGGCTCAGTGGTTTGAAATCCAGCATATAAATATGACCTCTGGCCAATGC
 
62
ACCAATGCAATGCTGGTAATTAACAATTATCAACGGCGATGCAAAAATCA
 
63
AAATACTTTTCTTCTTACAACTTTTGCTGATGTAGTTCATGTCTGTGGTA
 
64
ACCCAAGCATGCCCTGCCCTAGCAACACAAGTCTCAACAATTGTCATCAT
 
65
AGTGGAGTCCAGGTGCCTTTAATCCACTGTAACCTCACAACTCCAAGTCG
 
66
AAGG---ATTTCAAATTGCAGGTATACACAGACAACAGCAAACAAGTACT
 
67
ACATAGTTGCATGTAACAACAGCGATCCAGTACGGGACCCTCCACAGTAT
 
68
CCAGTGGTTCCAGTTCACTTGGATAGAGTCATC
 
69
Papio_EDN
 
70
ATGGTTCCAAAACTGTTCACTTCCCCAATTTGTCTGCTTCTTCTGTTGGG
 
71
GCTTATGGGTGTGGAAGGCTCACTTCATGCCAAACCCGGACAATTTACCT
 
72
GGGCTCAGTGGTTTGAAATCCAGCATATAAATATGACCTCTGGCCAATGC
 
73
ACCAATGCAATGCTGGTAATTAACAATTATCAACGGCGATGCAAAAATCA
 
74
AAATACTTTTCTTCTTACAACTTTTGCTGATGTAGTTCATGTCTGTGGTA
 
75
ACCCAAGCATGCCCTGCCCTAGCAACACAAGTCTCAACAATTGTCATCAT
 
76
AGTGGAGTCCAGGTGCCTTTAATCCACTGTAACCTCACAACTCCAAGTCG
 
77
AAGG---ATTTCAAATTGCAGGTATACACAGACAACAGCAAACAAGTACT
 
78
ACATAGTTGCATGTAACAACAGCGATCCAGTACGGGACCCTCCACAGTAT
 
79
CCAGTGGTTCCAGTTCACTTGGATAGAGTCATC
 
80
Macaq_EDN
 
81
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
82
GCTTATGGGTGTGGAAGGCTCACTTCATGCCAAACCCGGACAATTTACCT
 
83
GGGCTCAGTGGTTTGAAATCCAGCATATAAATATGACCTCTGGCCAATGC
 
84
ACCAATGCAATGCAGGTCATTAACAATTATCAACGGCGATGCAAAAATCA
 
85
AAATACTTTTCTTCTTACAACTTTTGCTGATGTAGTTCATGTCTGTGGTA
 
86
ACCCAAGCATGCCCTGCCCTAGCAACACAAGTCTCAACAATTGTCATCAT
 
87
AGTGGAGTCCAGGTGCCTTTAATCCACTGTAACCTCACAACTCCAAGTCG
 
88
AAGG---ATTTCAAATTGCAGGTATACACAGACAACAGCAAACAAGTACT
 
89
ACATAGTTGCATGTAACAACAGCGATCCAGTACGGGACCCTCCACAGTAT
 
90
CCAGTGGTTCCAGTTCACCTGGATAGAATCATC
 
91
Cercopith_EDN
 
92
ATGGTTCCAAAACTGTTCACTTCCCCAATTTGTCTGCTTCTTCTGTTGGG
 
93
GCTTATGGGTGTGGAGGGCTCACTCCATGCCAAACCCGGACAATTTACCT
 
94
GGGCTCAGTGGTTTGAAATCCAGCATATAAATATGACCTCTGGCCAATGC
 
95
ACCAATGCAATGCTGGTAATTAACAATTATCAACGGCGATGCAAAAATCA
 
96
AAATACTTTTCTTCTTACAACTTTTGCTGATGTAGTTCATGTCTGTGGTA
 
97
ACCCAAGCATGCCCTGCCCTAGCAACACAAGTCTCAACAATTGTCATCAT
 
98
AGTGGAGTCCAGGTGCCTTTAATCCACTGTAACCTCACAACTCCAAGTCA
 
99
AAAT---ATTTCAAATTGCAAGTATACACAGACAACAGCAAACAAGTTCT
 
100
ACATAGTTGCATGTAACAACAGCGATCCAGTACGGGACCCTCCACAGTAT
 
101
CCAGTGGTTCCAGTTCACCTGGATAGAGTCATC
 
102
OwlMonkey_EDN
 
103
ATGGTTCCAAAACTCTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
104
GCTTTTGGGTGTGGAGGGCTCACTCCATGCCGCGCCCCAGAAGTTTACCA
 
105
GGGCTCAGTGGTTTAGCATCCAGCACATCCAAACGACGCCCCTCCGCTGC
 
106
ACCAATGCAATGAGGGCAATTAACAAGTATCAACATCGATGCAAAAACCA
 
107
AAATACTTTTCTTCATACAACTTTTGCTGCTGTAGTTAATGTTTGTGGTA
 
108
ACACAAATATTACCTGCCCTCGTAATGCATCTCTCAACAATTGTCATCAC
 
109
AGTAGAGTCCAGGTGCCTTTAACCTACTGTAACCTCACA------GGTCC
 
110
ACCGACTATTACAAACTGCGTGTATTCCTCGACTCAAGCAAACATGTTCT
 
111
ATGTAGTTGCATGTGACAACAGAGATCAA---CGGGACCCTCCACAGTAT
 
112
CCAGTGGTTCCGGTTCATCTGGATACCACCATC
 
113
Tamarin_EDN
 
114
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTTTTGGG
 
115
GCTTTCGAGTTTGGAGGTCTCACTCCATGCCAAACCCCAGCAGTTTTCCT
 
116
GGGCTCAGTGGTTTAGAATCCAGCACATCCAAACAACTCCCCTCCACTGC
 
117
ACCTATGCAATGCGGGCAATTAACAGGTATCAACCTCGATGCAAAAACCG
 
118
AAATACTTTTCTTCATACAACTTTTGCTGATGTAGTTAATGTTTGTGGTA
 
119
ACACAAATATGACCTGCCCTGGTAATGCATCTCTCAACAATTGTCATCAC
 
120
AGTGGAGTCCGGGTGCCTTTAACCTACTGTAACCTCACA------GGTCC
 
121
ACAGACTATTTCAAACTGTGTGTATTCCTCGACTCAAGCAAACATGTTCT
 
122
ATGTAGTTGCATGTGACAACAGAGATCCA---CGGGATCCTCCACAGTAT
 
123
CCAGTGGTCCCGGTTCACCTGGATACCATCATC
 
124
Human_ECP
 
125
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
126
GCTTATGGGTGTGGAGGGCTCACTCCATGCCAGACCCCCACAGTTTACGA
 
127
GGGCTCAGTGGTTTGCCATCCAGCACATCAGTCTGAACCCCCCTCGATGC
 
128
ACCATTGCAATGCGGGCAATTAACAATTATCGATGGCGTTGCAAAAACCA
 
129
AAATACTTTTCTTCGTACAACTTTTGCTAATGTAGTTAATGTTTGTGGTA
 
130
ACCAAAGTATACGCTGCCCTCATAACAGAACTCTCAACAATTGTCATCGG
 
131
AGTAGATTCCGGGTGCCTTTACTCCACTGTGACCTCATAAATCCAGGTGC
 
132
ACAGAATATTTCAAACTGCACGTATGCAGACAGACCAGGAAGGAGGTTCT
 
133
ATGTAGTTGCATGTGACAACAGAGATCCA---CGGGATTCTCCACGGTAT
 
134
CCTGTGGTTCCAGTTCACCTGGATACCACCATC
 
135
Goril_ECP
 
136
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
137
GCTTATGGGTGTGGAGGGCTCACTCCATGCCAGACCCCCACAGTTTACGA
 
138
GGGCTCAGTGGTTTGCCATCCAGCACATCAGTCTGAACCCCCCTCGATGC
 
139
ACCATTGCAATGCGGGTAATTAACAATTATCGATGGCGTTGCAAAAACCA
 
140
AAATACTTTTCTTCGTACAACTTTTGCTAATGTAGTTAATGTTTGTGGTA
 
141
ACCAAAGTATACGCTGCCTTCATAACAGAACTCTCAACAATTGTCATCGG
 
142
AGTAGATTCCGGGTGCCTTTACTCCACTGTGACCTCATAAATCCAGGTGC
 
143
ACAGAATATTTCAAACTGCAGGTATGCAGACAGACCAGGAAGGAGGTTCT
 
144
ATGTAGTTGCATGTGACAACAGAGATCCA---CAGGATTCTCCACGGTAT
 
145
CCTGTGGTTCCTGTTCACCTGGATACCACCATC
 
146
Chimp_ECP
 
147
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
148
GCTTATGGGTGTGGAGGGCTCACTCCATGCCAGACCCCCACAGTTTACGA
 
149
GGGCTCAGTGGTTTGCCATCCAGCACATCAGTCTGAACCCCCCTCGATGC
 
150
ACCATTGCAATGCGGGTAATTAACAATTATCGATGGCGTTGCAAAAACCA
 
151
AAATACTTTTCTTCGTACAACTTTTGCTAATGTAGTTAATGTTTGTGGTA
 
152
ACCAAAGTATACGCTGCCCTCATAACAGAACTCTCAACAATTGTCATCAG
 
153
AGTAGATTCCGGGTGCCTTTACTCCACTGTGACCTCATAAATCCAGGTGC
 
154
ACAGAATATTTCAAACTGCAGGTATGCAGACAGACCAGGAAGGAGGTTCT
 
155
ATGTAGTTGCATGTGACAACAGAGATCCA---CGGGATTCTCCACGGTAT
 
156
CCTGTGGTTCCAGTTCACCTGGATGCCACCATC
 
157
Macaq_ECP
 
158
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
159
GCTTATGGGTGTGGAGGGCTCACTCCATGCCAGACCCCCACAGTTTACAA
 
160
AGGCTCAGTGGTTTGCCATCCAGCACATCAATGTGAACCCCCCTCGATGC
 
161
ACCATTGCAATGCGGGTAATAAATAATTATCAACGGCGTTGCAAAAACCA
 
162
AAATACTTTTCTTCGTACAACTTTTGCATATACAGCTAATGTTTGTCGTA
 
163
ACGAACGTATACGCTGCCCTCGTAACAGAACTCTCCACAATTGTCATCGT
 
164
AGTAGATACCGGGTGCCTTTACTCCACTGTGACCTCATAAATCCAGGTGC
 
165
ACAGAATATTTCAACCTGCAGGTATGCAGACAGACCAGGACGGAGGTTCT
 
166
ATGTAGTTGCATGTGAAAGCAGAGATCCA---CGGGATTCTCCACGGTAT
 
167
CCAGTGGTTCCAGTTCACCTGGATACCACCATC
 
168
Macaq2_ECP
 
169
ATGGTTCCAAAACTGTTCACTCCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
170
GCTTATGGGTGTGGAGGGCTCACTCCATGCCAGACCCCCACAGTTTACGA
 
171
AGGCTCAGTGGTTTGCCATCCAGCACATCAATGTGAACCCCCCTCGATGC
 
172
ACCATTGCAATGCGGGTAATAAATAATTATCAACGGCGTTGCAAAAACCA
 
173
AAATACTTTTCTTCGTACAACTTTTGCAAATACAGTTAATGTTTGTCGTA
 
174
ACCGAAGTATACGCTGCCCTCGTAACAGAACTCTCCACAATTGTCATCGT
 
175
AGTAGCTACCGGGTGCCTTTACTCCACTGTGACCTCATAAATCCAGGTGC
 
176
ACAGAATATTTCAACCTGCAGGTATGCAGACAGACCAGGACGGAGGTTCT
 
177
ATGTAGTTGCATGTGAAAGCAGAGATCCA---CGGGATTCTCCACGGTAT
 
178
CCAGTGGTTCCAGTTCACCTGGATACCATCATC
 
179
Orang_ECP
 
180
ATGGTTCCAAAACTGTTCACTTCCCAAATTTGTCTGCTTCTTCTGTTGGG
 
181
GCTTAGTGGTGTGGGGGGCTCACTCCATGCCAAACCCCGACAGTTTACGA
 
182
GGGCTCAGTGGTTTGCCATCCAGCACGTCAGTCTGAACCCTCCTCAATGC
 
183
ACCACTGCAATGCGGGTAATTAACAATTATCAACGGCGTTGCAAAGACCA
 
184
AAATACTTTTCTTCGTACAACTTTTGCTAATGTAGTTAATGTTTGTGGTA
 
185
ACCCAAATATAACCTGTCCTCGTAACAGAACTCTCCACAATTGTCATCGG
 
186
AGTAGATTCCAGGTGCCTTTACTCCACTGTAACCTCACAAATCCAGGTGC
 
187
ACAGAATATTTCAAACTGCAAGTATGCAGACAGAACAGAAAGGAGGTTCT
 
188
ATGTAGTTGCATGTGACAACAGAGATCCA---CGGGATTCTCCACGGTAT
 
189
CCTGTGGTTCCAGTTCACCTGGATACCACCATC