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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2011-02-08 16:11:12 UTC
  • mfrom: (1.1.7 upstream)
  • Revision ID: james.westby@ubuntu.com-20110208161112-1fvt0mtygl8rhajf
Tags: 0.5.9-1
* New usptream release
  - Upstream moved to GitHub (debian/upstream-metadata.yaml).
  - Checked copyright; one file was removed (debian/copyright).
* Migrated the Debian source package to Git (debian/control).
* Use Debhelper 8 (debian/control, debian/compat).

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Makefile
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CC=                     gcc
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CXX=            g++
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CFLAGS=         -g -Wall -O2 -m64
 
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CFLAGS=         -g -Wall -O2
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CXXFLAGS=       $(CFLAGS)
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DFLAGS=         -DHAVE_PTHREAD #-D_FILE_OFFSET_BITS=64
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OBJS=           utils.o bwt.o bwtio.o bwtaln.o bwtgap.o is.o \
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                        bntseq.o bwtmisc.o bwtindex.o stdaln.o simple_dp.o \
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                        bwaseqio.o bwase.o bwape.o kstring.o cs2nt.o \
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                        bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o \
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                        bwtsw2_chain.o
 
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                        bwtsw2_chain.o bamlite.o
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PROG=           bwa
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INCLUDES=       
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LIBS=           -lm -lz -lpthread -Lbwt_gen -lbwtgen