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- Committer: Package Import Robot
- Author(s): Andreas Tille
- Date: 2013-08-08 22:07:27 UTC
- mfrom: (1.1.3)
- Revision ID: package-import@ubuntu.com-20130808220727-deh08eeugdwjff1h
Tags: 4.7-1
* New upstream version
* debian/control:
- cme fix dpkg-control
- use anonscm in Vcs fields
* debian/rules: provide get-orig-source target to make use of new uscan
to remove windows binaries
* debian/control:
- cme fix dpkg-control
- use anonscm in Vcs fields
* debian/rules: provide get-orig-source target to make use of new uscan
to remove windows binaries
- files added:
- .pc/.quilt_patches
- examples/TipDate.FluH1
- examples/TipDate.FluH1/r1
- examples/TipDate.FluH1/r2
- examples/TipDate.HIV2
- examples/TipDate.HIV2/r1
- examples/TipDate.HIV2/r2
- files removed:
- Technical/Simulation/Codon/10s.trees
- examples/TipDate
- examples/TipDate/r1
- examples/TipDate/r2
- examples/TipDate2Delete
- files modified:
- MCcodon.dat
added
removed
examples/TipDate.FluH1/H1.NodeNumbers.tre
1
#NEXUS
2
begin taxa;
3
dimensions ntax=289;
4
taxlabels
5
1_179_Avian_H1N6_USA_1976
6
2_165_Avian_H1N1_Canada_1977
7
3_177_Avian_H1N1_Canada_1977
8
4_105_Avian_H1N1_Canada_1976
9
5_267_Avian_H1N1_Canada_1976
10
6_195_Avian_H1N6_Canada_1977
11
7_162_Avian_H1N1_Canada_1977
12
8_213_Avian_H1N5_USA_1978
13
9_164_Avian_H1N1_Canada_1979
14
10_163_Avian_H1N1_Canada_1979
15
11_158_Avian_H1N1_USA_1981
16
12_309_Avian_H1N1_USA_1980
17
13_153_Avian_H1N5_Canada_1981
18
14_156_Avian_H1N1_Canada_2002
19
15_196_Avian_H1N1_Canada_1998
20
16_180_Avian_H1N9_USA_1987
21
17_274_Avian_H1N1_USA_1987
22
18_279_Avian_H1N1_USA_1980
23
19_116_Avian_H1N1_USA_1985
24
20_106_Avian_H1N1_USA_1981
25
21_199_Avian_H1N2_USA_1982
26
22_155_Avian_H1N1_Canada_1988
27
23_169_Avian_H1N1_USA_1987
28
24_264_Avian_H1N1_USA_1986
29
25_197_Avian_H1N1_USA_1990
30
26_289_Avian_H1N1_USA_1993
31
27_255_Avian_H1N1_USA_1994
32
28_181_Avian_H1N1_USA_1993
33
29_200_Avian_H1N1_USA_1993
34
30_154_Avian_H1N1_Canada_1996
35
31_198_Avian_H1N1_USA_1999
36
32_223_Avian_H1N1_USA_2002
37
33_224_Avian_H1N1_USA_2007
38
34_233_Avian_H1N1_USA_2005
39
35_182_Avian_H1N6_USA_2002
40
36_302_Avian_H1N1_USA_2003
41
37_303_Avian_H1N1_USA_2003
42
38_157_Avian_H1N3_NewZealand_1976
43
39_125_Avian_H1N1_Japan_1977
44
40_285_Avian_H1N1_HongKong_1979
45
41_132_Avian_H1N1_Australia_1980
46
42_102_Avian_H1N1_Japan_1996
47
43_126_Avian_H1N9_Japan_1998
48
44_307_Avian_H1N1_Italy_2003
49
45_276_Avian_H1N1_Italy_2007
50
46_277_Avian_H1N1_Italy_2006
51
47_133_Avian_H1N1_Germany_1977
52
48_248_Avian_H1_HongKong_1977
53
49_134_Swine_H1N1_Netherlands_1980[&!color=#-16777063]
54
50_234_Swine_H1N1_Belgium_1979[&!color=#-16777063]
55
51_237_Swine_H1N1_France_1984[&!color=#-16777063]
56
52_107_Swine_H1N1_Netherlands_1985[&!color=#-16777063]
57
53_117_Swine_H1N1_Belgium_1983[&!color=#-16777063]
58
54_135_Swine_H1N1_Italy_1987[&!color=#-16777063]
59
55_149_Swine_H1N1_Germany_1995[&!color=#-16777063]
60
56_235_Swine_H1N1_France_1995[&!color=#-16777063]
61
57_288_Swine_H1N1_Germany_1992[&!color=#-16777063]
62
58_227_Swine_H1N1_Spain_1991[&!color=#-16777063]
63
59_226_Swine_H1N1_France_1985[&!color=#-16777063]
64
60_238_Swine_H1N1_UnitedKingdom_1992[&!color=#-16777063]
65
61_210_Swine_H1N1_UnitedKingdom_1995[&!color=#-16777063]
66
62_236_Swine_H1N1_UnitedKingdom_1996[&!color=#-16777063]
67
63_225_Swine_H1N1_UnitedKingdom_1993[&!color=#-16777063]
68
64_212_Swine_H1N1_UnitedKingdom_1999[&!color=#-16777063]
69
65_246_Swine_H1N1_UnitedKingdom_1994[&!color=#-16777063]
70
66_211_Swine_H1N1_UnitedKingdom_1998[&!color=#-16777063]
71
67_247_Swine_H1N1_UnitedKingdom_1997[&!color=#-16777063]
72
68_141_Swine_H1N1_Italy_1997[&!color=#-16777063]
73
69_123_Swine_H1N1_Italy_1996[&!color=#-16777063]
74
70_140_Swine_H1N1_Italy_1998[&!color=#-16777063]
75
71_191_Swine_H1N1_Italy_1997[&!color=#-16777063]
76
72_310_Swine_H1N1_Germany_1993[&!color=#-16777063]
77
73_228_Swine_H1N1_Denmark_1993[&!color=#-16777063]
78
74_305_Swine_H1N1_Belgium_1998[&!color=#-16777063]
79
75_168_Swine_H1N1_Spain_2003[&!color=#-16777063]
80
76_159_Swine_H1N1_Spain_2004[&!color=#-16777063]
81
77_278_Swine_H1N1_Hungary_2006[&!color=#-16777063]
82
78_124_Swine_H1N1_France_1999[&!color=#-16777063]
83
79_304_Swine_H1N1_China_2007[&!color=#-16777063]
84
80_287_Swine_H1N1_Germany_2003[&!color=#-16777063]
85
81_167_Swine_H1N1_Spain_2003[&!color=#-16777063]
86
82_192_Swine_H1N2_Germany_2000[&!color=#-16777063]
87
83_1_Human_H1N1_USA_1918[&!color=#-6750208]
88
84_3_Human_H1N1_UnitedKingdom_1933[&!color=#-6750208]
89
85_2_Human_H1N1_UnitedKingdom_1933[&!color=#-6750208]
90
86_23_Human_H1_Japan_1967[&!color=#-6750208]
91
87_7_Human_H1N1_Australia_1935[&!color=#-6750208]
92
88_6_Human_H1N1_USA_1935[&!color=#-6750208]
93
89_8_Human_H1N1_1936[&!color=#-6750208]
94
90_4_Human_H1N1_PuertoRico_1934[&!color=#-6750208]
95
91_5_Human_H1N1_PuertoRico_1934[&!color=#-6750208]
96
92_10_Human_H1N1_USA_1942[&!color=#-6750208]
97
93_11_Human_H1N1_USA_1943[&!color=#-6750208]
98
94_12_Human_H1N1_USA_1943[&!color=#-6750208]
99
95_13_Human_H1N1_USA_1945[&!color=#-6750208]
100
96_9_Human_H1N1_USA_1940[&!color=#-6750208]
101
97_14_Human_H1N1_1946[&!color=#-6750208]
102
98_15_Human_H1N1_USA_1947[&!color=#-6750208]
103
99_16_Human_H1N1_USA_1947[&!color=#-6750208]
104
100_18_Human_H1N1_USA_1950[&!color=#-6750208]
105
101_22_Human_H1N1_USA_1957[&!color=#-6750208]
106
102_19_Human_H1N1_USA_1951[&!color=#-6750208]
107
103_20_Human_H1N1_Malaysia_1954[&!color=#-6750208]
108
104_17_Human_H1N1_USA_1948[&!color=#-6750208]
109
105_21_Human_H1N1_Russia_1954[&!color=#-6750208]
110
106_26_Human_H1N1_HongKong_1977_1954[&!color=#-6750208]
111
107_27_Human_H1N1_USA_1978_1955[&!color=#-6750208]
112
108_31_Human_H1N1_USA_1983_1960[&!color=#-6750208]
113
109_29_Human_H1N1_UnitedKingdom_1982_1959[&!color=#-6750208]
114
110_30_Human_H1N1_Fiji_1983_1960[&!color=#-6750208]
115
111_28_Human_H1N1_India_1980_1957[&!color=#-6750208]
116
112_33_Human_H1N1_USA_1986_1963[&!color=#-6750208]
117
113_36_Human_H1N1_Italy_1989_1966[&!color=#-6750208]
118
114_39_Human_H1N1_Mongolia_1991_1968[&!color=#-6750208]
119
115_35_Human_H1N1_Japan_1989_1966[&!color=#-6750208]
120
116_37_Human_H1N1_Italy_1989_1966[&!color=#-6750208]
121
117_38_Human_H1N1_USA_1991_1968[&!color=#-6750208]
122
118_44_Human_H1N1_USA_1995_1972[&!color=#-6750208]
123
119_43_Human_H1N1_Switzerland_1995_1972[&!color=#-6750208]
124
120_55_Human_H1N1_Australia_2000_1977[&!color=#-6750208]
125
121_41_Human_H1N1_USA_1995_1972[&!color=#-6750208]
126
122_48_Human_H1N1_Taiwan_1996_1973[&!color=#-6750208]
127
123_42_Human_H1N1_China_1995_1972[&!color=#-6750208]
128
124_45_Human_H1N1_USA_1995_1972[&!color=#-6750208]
129
125_47_Human_H1N1_USA_1996_1973[&!color=#-6750208]
130
126_40_Human_H1N1_China_1995_1972[&!color=#-6750208]
131
127_46_Human_H1N1_China_1996_1973[&!color=#-6750208]
132
128_52_Human_H1N1_HongKong_1998_1975[&!color=#-6750208]
133
129_49_Human_H1N1_Taiwan_1997_1974[&!color=#-6750208]
134
130_51_Human_H1N1_HongKong_1998_1975[&!color=#-6750208]
135
131_50_Human_H1N1_HongKong_1998_1975[&!color=#-6750208]
136
132_60_Human_H1N1_Taiwan_2002_1979[&!color=#-6750208]
137
133_54_Human_H1N1_NewCaledonia_1999_1976[&!color=#-6750208]
138
134_53_Human_H1N1_Taiwan_1999_1976[&!color=#-6750208]
139
135_56_Human_H1N1_USA_2000_1977[&!color=#-6750208]
140
136_57_Human_H1N1_NewZealand_2000_1977[&!color=#-6750208]
141
137_58_Human_H1N1_NewZealand_2000_1977[&!color=#-6750208]
142
138_61_Human_H1N2_USA_2002_1979[&!color=#-6750208]
143
139_62_Human_H1N2_Denmark_2003_1980[&!color=#-6750208]
144
140_64_Human_H1N2_USA_2003_1980[&!color=#-6750208]
145
141_59_Human_H1N1_Japan_2001_1978[&!color=#-6750208]
146
142_63_Human_H1N1_USA_2003_1980[&!color=#-6750208]
147
143_65_Human_H1N1_Denmark_2004_1981[&!color=#-6750208]
148
144_68_Human_H1N1_Australia_2005_1982[&!color=#-6750208]
149
145_79_Human_H1N1_USA_2007_1984[&!color=#-6750208]
150
146_76_Human_H1N1_USA_2006_1983[&!color=#-6750208]
151
147_82_Human_H1N1_USA_2007_1984[&!color=#-6750208]
152
148_72_Human_H1N1_Thailand_2006_1983[&!color=#-6750208]
153
149_77_Human_H1N1_SolomonIslands_2006_1983[&!color=#-6750208]
154
150_74_Human_H1N1_China_2006_1983[&!color=#-6750208]
155
151_75_Human_H1N1_China_2006_1983[&!color=#-6750208]
156
152_81_Human_H1N1_USA_2007_1984[&!color=#-6750208]
157
153_71_Human_H1N1_China_2006_1983[&!color=#-6750208]
158
154_73_Human_H1N1_China_2006_1983[&!color=#-6750208]
159
155_98_Human_H1N1_USA_2008_1985[&!color=#-6750208]
160
156_83_Human_H1N1_USA_2007_1984[&!color=#-6750208]
161
157_84_Human_H1N1_USA_2007_1984[&!color=#-6750208]
162
158_67_Human_H1N1_NewZealand_2004_1981[&!color=#-6750208]
163
159_97_Human_H1N1_Australia_2008_1985[&!color=#-6750208]
164
160_78_Human_H1N1_USA_2006_1983[&!color=#-6750208]
165
161_80_Human_H1N1_USA_2007_1984[&!color=#-6750208]
166
162_86_Human_H1N1_USA_2007_1984[&!color=#-6750208]
167
163_92_Human_H1N1_USA_2008_1985[&!color=#-6750208]
168
164_87_Human_H1N1_USA_2007_1984[&!color=#-6750208]
169
165_88_Human_H1N1_USA_2007_1984[&!color=#-6750208]
170
166_85_Human_H1N1_USA_2007_1984[&!color=#-6750208]
171
167_95_Human_H1N1_USA_2008_1985[&!color=#-6750208]
172
168_89_Human_H1N1_USA_2007_1984[&!color=#-6750208]
173
169_93_Human_H1N1_USA_2008_1985[&!color=#-6750208]
174
170_94_Human_H1N1_USA_2008_1985[&!color=#-6750208]
175
171_96_Human_H1N1_USA_2008_1985[&!color=#-6750208]
176
172_90_Human_H1N1_USA_2008_1985[&!color=#-6750208]
177
173_100_Human_H1N1_USA_2008_1985[&!color=#-6750208]
178
174_91_Human_H1N1_USA_2008_1985[&!color=#-6750208]
179
175_99_Human_H1N1_USA_2008_1985[&!color=#-6750208]
180
176_115_Swine_H1N1_USA_1930[&!color=#-16777063]
181
177_166_Swine_H1N1_1931[&!color=#-16777063]
182
178_292_Swine_H1N1_USA_1945[&!color=#-16777063]
183
179_243_Swine_H1N1_USA_1942[&!color=#-16777063]
184
180_244_Swine_H1N1_USA_1935[&!color=#-16777063]
185
181_232_Swine_H1N1_USA_1957[&!color=#-16777063]
186
182_104_Swine_H1N1_USA_1961[&!color=#-16777063]
187
183_293_Swine_H1N1_USA_1968[&!color=#-16777063]
188
184_219_Swine_H1N1_USA_1966[&!color=#-16777063]
189
185_207_Swine_H1N1_USA_1967[&!color=#-16777063]
190
186_190_Swine_H1N1_USA_1970[&!color=#-16777063]
191
187_188_Swine_H1N1_USA_1971[&!color=#-16777063]
192
188_257_Swine_H1N1_USA_1973[&!color=#-16777063]
193
189_202_Swine_H1N1_USA_1975[&!color=#-16777063]
194
190_308_Swine_H1N1_USA_1976[&!color=#-16777063]
195
191_171_Swine_H1N1_USA_1977[&!color=#-16777063]
196
192_240_Swine_H1N1_USA_1977[&!color=#-16777063]
197
193_217_Swine_H1N1_USA_1977[&!color=#-16777063]
198
194_242_Swine_H1N1_USA_1977[&!color=#-16777063]
199
195_214_Swine_H1N1_USA_1976[&!color=#-16777063]
200
196_170_Swine_H1N1_USA_1976[&!color=#-16777063]
201
197_178_Swine_H1N1_USA_1977[&!color=#-16777063]
202
198_205_Swine_H1N1_USA_1977[&!color=#-16777063]
203
199_184_Swine_H1N1_USA_1977[&!color=#-16777063]
204
200_187_Swine_H1N1_USA_1978[&!color=#-16777063]
205
201_144_Swine_H1N1_Japan_1977[&!color=#-16777063]
206
202_290_Swine_H1N1_UnitedKingdom_1993[&!color=#-16777063]
207
203_312_Swine_H1N1_UnitedKingdom_1986[&!color=#-16777063]
208
204_103_Swine_H1N1_Japan_1979[&!color=#-16777063]
209
205_113_Swine_H1N2_Japan_1996[&!color=#-16777063]
210
206_110_Swine_H1N2_Japan_2003[&!color=#-16777063]
211
207_128_Swine_H1N2_Japan_2006[&!color=#-16777063]
212
208_183_Swine_H1N1_USA_1976[&!color=#-16777063]
213
209_209_Swine_H1N1_USA_1978[&!color=#-16777063]
214
210_231_Swine_H1N1_USA_1977[&!color=#-16777063]
215
211_127_Swine_H1N2_Japan_1980[&!color=#-16777063]
216
212_145_Swine_H1N1_Japan_1981[&!color=#-16777063]
217
213_215_Swine_H1N1_USA_1976[&!color=#-16777063]
218
214_218_Swine_H1N1_USA_1977[&!color=#-16777063]
219
215_221_Swine_H1N1_USA_1978[&!color=#-16777063]
220
216_208_Swine_H1N1_USA_1978[&!color=#-16777063]
221
217_220_Swine_H1N1_USA_1978[&!color=#-16777063]
222
218_112_Swine_H1N2_Thailand_2005[&!color=#-16777063]
223
219_261_Swine_H1N1_Thailand_2005[&!color=#-16777063]
224
220_143_Swine_H1N1_Thailand_2004[&!color=#-16777063]
225
221_262_Swine_H1N1_Thailand_2005[&!color=#-16777063]
226
222_206_Swine_H1N1_USA_1980[&!color=#-16777063]
227
223_186_Swine_H1N1_USA_1979[&!color=#-16777063]
228
224_189_Swine_H1N1_USA_1980[&!color=#-16777063]
229
225_203_Swine_H1N1_Canada_1981[&!color=#-16777063]
230
226_216_Swine_H1N1_Canada_1981[&!color=#-16777063]
231
227_222_Swine_H1N1_USA_1987[&!color=#-16777063]
232
228_299_Swine_H1N1_USA_1992[&!color=#-16777063]
233
229_268_Swine_H1N1_Canada_2004[&!color=#-16777063]
234
230_281_Swine_H1N1_Canada_2003[&!color=#-16777063]
235
231_253_Swine_H1N1_Canada_2004[&!color=#-16777063]
236
232_301_Swine_H1_Canada_1991[&!color=#-16777063]
237
233_194_Swine_H1N2_Taiwan_2003[&!color=#-16777063]
238
234_282_Swine_H1N2_Taiwan_2004[&!color=#-16777063]
239
235_249_Swine_H1N1_Canada_2003[&!color=#-16777063]
240
236_251_Swine_H1N1_Canada_2003[&!color=#-16777063]
241
237_245_Swine_H1N1_USA_1986[&!color=#-16777063]
242
238_185_Swine_H1N1_USA_1985[&!color=#-16777063]
243
239_230_Swine_H1N1_USA_1987[&!color=#-16777063]
244
240_142_Swine_H1N1_Thailand_2000[&!color=#-16777063]
245
241_118_Swine_H1N1_USA_1997[&!color=#-16777063]
246
242_175_Swine_H1N2_USA_2001[&!color=#-16777063]
247
243_300_Swine_H1N1_USA_1988[&!color=#-16777063]
248
244_111_Swine_H1N1_Thailand_2003[&!color=#-16777063]
249
245_241_Swine_H1N1_USA_1988[&!color=#-16777063]
250
246_201_Swine_H1N1_USA_1988[&!color=#-16777063]
251
247_239_Swine_H1N1_China_2001[&!color=#-16777063]
252
248_294_Swine_H1N1_China_2005[&!color=#-16777063]
253
249_204_Swine_H1N1_USA_1991[&!color=#-16777063]
254
250_136_Swine_H1N1_USA_1997[&!color=#-16777063]
255
251_108_Swine_H1N1_USA_1997[&!color=#-16777063]
256
252_109_Swine_H1N1_USA_1998[&!color=#-16777063]
257
253_146_Swine_H1N1_USA_1998[&!color=#-16777063]
258
254_280_Swine_H1N2_China_2004[&!color=#-16777063]
259
255_284_Swine_H1N2_China_2005[&!color=#-16777063]
260
256_306_Swine_H1N2_China_2007[&!color=#-16777063]
261
257_271_Swine_H1N1_USA_1999[&!color=#-16777063]
262
258_148_Swine_H1N2_USA_2000[&!color=#-16777063]
263
259_138_Swine_H1N2_USA_2001[&!color=#-16777063]
264
260_272_Swine_H1N1_USA_2002[&!color=#-16777063]
265
261_172_Swine_H1N2_USA_2001[&!color=#-16777063]
266
262_120_Swine_H1N2_USA_2001[&!color=#-16777063]
267
263_193_Swine_H1N2_SouthKorea_2002[&!color=#-16777063]
268
264_160_Swine_H1N2_USA_2001[&!color=#-16777063]
269
265_260_Swine_H1N1_USA_2004[&!color=#-16777063]
270
266_296_Swine_H1N1_SouthKorea_2004[&!color=#-16777063]
271
267_297_Swine_H1N1_SouthKorea_2005[&!color=#-16777063]
272
268_174_Swine_H1N2_USA_2001[&!color=#-16777063]
273
269_147_Swine_H1N2_USA_2001[&!color=#-16777063]
274
270_258_Swine_H1N2_USA_2001[&!color=#-16777063]
275
271_139_Swine_H1N2_USA_2000[&!color=#-16777063]
276
272_101_Human_H1N1_USA_2009[&!color=#-6750208]
277
273_313_Human_H1N1_USA_2009[&!color=#-6750208]
278
274_269_Swine_H1N2_China_2006[&!color=#-16777063]
279
275_283_Swine_H1N2_China_2005[&!color=#-16777063]
280
276_119_Swine_H1N2_USA_1999[&!color=#-16777063]
281
277_173_Swine_H1N2_USA_2001[&!color=#-16777063]
282
278_121_Swine_H1N2_USA_2001[&!color=#-16777063]
283
279_122_Swine_H1N2_USA_2001[&!color=#-16777063]
284
280_137_Swine_H1N2_USA_2001[&!color=#-16777063]
285
281_263_Swine_H1N1_USA_2007[&!color=#-16777063]
286
282_273_Swine_H1N2_USA_2003[&!color=#-16777063]
287
283_151_Swine_H1N2_USA_2001[&!color=#-16777063]
288
284_259_Swine_H1N2_USA_2004[&!color=#-16777063]
289
285_291_Swine_H1N2_SouthKorea_2005[&!color=#-16777063]
290
286_266_Swine_H1N2_SouthKorea_2005[&!color=#-16777063]
291
287_298_Swine_H1N2_SouthKorea_2005[&!color=#-16777063]
292
288_265_Swine_H1N2_SouthKorea_2004[&!color=#-16777063]
293
289_275_Swine_H1N2_SouthKorea_2006[&!color=#-16777063]
294
;
295
end;
296
297
begin trees;
298
tree tree_1 = [&R] 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)[&label=483]:1.0)[&label=481]:1.0,((195_214_Swine_H1N1_USA_1976:1.0,(196_170_Swine_H1N1_USA_1976:1.0,(197_178_Swine_H1N1_USA_1977:1.0,(198_205_Swine_H1N1_USA_1977:1.0,(199_184_Swine_H1N1_USA_1977:1.0,200_187_Swine_H1N1_USA_1978:1.0)[&label=489]:1.0)[&label=488]:1.0)[&label=487]:1.0)[&label=486]:1.0)[&label=485]:1.0,((201_144_Swine_H1N1_Japan_1977:1.0,((202_290_Swine_H1N1_UnitedKingdom_1993:1.0,203_312_Swine_H1N1_UnitedKingdom_1986:1.0)[&label=493]:1.0,(204_103_Swine_H1N1_Japan_1979:1.0,(205_113_Swine_H1N2_Japan_1996:1.0,(206_110_Swine_H1N2_Japan_2003:1.0,207_128_Swine_H1N2_Japan_2006:1.0)[&label=496]:1.0)[&label=495]:1.0)[&label=494]:1.0)[&label=492]:1.0)[&label=491]:1.0,((208_183_Swine_H1N1_USA_1976:1.0,(209_209_Swine_H1N1_USA_1978:1.0,210_231_Swine_H1N1_USA_1977:1.0)[&label=499]:1.0)[&label=498]:1.0,(((211_127_Swine_H1N2_Japan_1980:1.0,212_145_Swine_H1N1_Japan_1981:1.0)[&label=502]:1.0,213_215_Swine_H1N1_USA_1976:1.0)[&label=501]:1.0,(214_218_Swine_H1N1_USA_1977:1.0,(215_221_Swine_H1N1_USA_1978:1.0,(216_208_Swine_H1N1_USA_1978:1.0,(217_220_Swine_H1N1_USA_1978:1.0,((218_112_Swine_H1N2_Thailand_2005:1.0,(219_261_Swine_H1N1_Thailand_2005:1.0,(220_143_Swine_H1N1_Thailand_2004:1.0,221_262_Swine_H1N1_Thailand_2005:1.0)[&label=510]:1.0)[&label=509]:1.0)[&label=508]:1.0,(222_206_Swine_H1N1_USA_1980:1.0,(223_186_Swine_H1N1_USA_1979:1.0,((224_189_Swine_H1N1_USA_1980:1.0,(225_203_Swine_H1N1_Canada_1981:1.0,226_216_Swine_H1N1_Canada_1981:1.0)[&label=515]:1.0)[&label=514]:1.0,(((227_222_Swine_H1N1_USA_1987:1.0,228_299_Swine_H1N1_USA_1992:1.0)[&label=518]:1.0,((229_268_Swine_H1N1_Canada_2004:1.0,230_281_Swine_H1N1_Canada_2003:1.0)[&label=520]:1.0,(231_253_Swine_H1N1_Canada_2004:1.0,232_301_Swine_H1_Canada_1991:1.0)[&label=521]:1.0)[&label=519]:1.0)[&label=517]:1.0,((233_194_Swine_H1N2_Taiwan_2003:1.0,234_282_Swine_H1N2_Taiwan_2004:1.0)[&label=523]:1.0,((235_249_Swine_H1N1_Canada_2003:1.0,236_251_Swine_H1N1_Canada_2003:1.0)[&label=525]:1.0,(237_245_Swine_H1N1_USA_1986:1.0,(238_185_Swine_H1N1_USA_1985:1.0,(239_230_Swine_H1N1_USA_1987:1.0,(240_142_Swine_H1N1_Thailand_2000:1.0,((241_118_Swine_H1N1_USA_1997:1.0,242_175_Swine_H1N2_USA_2001:1.0)[&label=531]:1.0,(243_300_Swine_H1N1_USA_1988:1.0,((244_111_Swine_H1N1_Thailand_2003:1.0,245_241_Swine_H1N1_USA_1988:1.0)[&label=534]:1.0,(246_201_Swine_H1N1_USA_1988:1.0,((247_239_Swine_H1N1_China_2001:1.0,248_294_Swine_H1N1_China_2005:1.0)[&label=537]:1.0,((249_204_Swine_H1N1_USA_1991:1.0,(250_136_Swine_H1N1_USA_1997:1.0,(251_108_Swine_H1N1_USA_1997:1.0,(252_109_Swine_H1N1_USA_1998:1.0,253_146_Swine_H1N1_USA_1998:1.0)[&label=542]:1.0)[&label=541]:1.0)[&label=540]:1.0)[&label=539]:1.0,((254_280_Swine_H1N2_China_2004:1.0,(255_284_Swine_H1N2_China_2005:1.0,256_306_Swine_H1N2_China_2007:1.0)[&label=545]:1.0)[&label=544]:1.0,((257_271_Swine_H1N1_USA_1999:1.0,((258_148_Swine_H1N2_USA_2000:1.0,(259_138_Swine_H1N2_USA_2001:1.0,260_272_Swine_H1N1_USA_2002:1.0)[&label=550]:1.0)[&label=549]:1.0,(261_172_Swine_H1N2_USA_2001:1.0,(262_120_Swine_H1N2_USA_2001:1.0,(263_193_Swine_H1N2_SouthKorea_2002:1.0,(264_160_Swine_H1N2_USA_2001:1.0,(265_260_Swine_H1N1_USA_2004:1.0,(266_296_Swine_H1N1_SouthKorea_2004:1.0,267_297_Swine_H1N1_SouthKorea_2005:1.0)[&label=556]:1.0)[&label=555]:1.0)[&label=554]:1.0)[&label=553]:1.0)[&label=552]:1.0)[&label=551]:1.0)[&label=548]:1.0)[&label=547]:1.0,(268_174_Swine_H1N2_USA_2001:1.0,(269_147_Swine_H1N2_USA_2001:1.0,(270_258_Swine_H1N2_USA_2001:1.0,((271_139_Swine_H1N2_USA_2000:1.0,((272_101_Human_H1N1_USA_2009:1.0,273_313_Human_H1N1_USA_2009:1.0)[&label=563]:1.0,(274_269_Swine_H1N2_China_2006:1.0,275_283_Swine_H1N2_China_2005:1.0)[&label=564]:1.0)[&label=562]:1.0)[&label=561]:1.0,(276_119_Swine_H1N2_USA_1999:1.0,((277_173_Swine_H1N2_USA_2001:1.0,(278_121_Swine_H1N2_USA_2001:1.0,279_122_Swine_H1N2_USA_2001:1.0)[&label=568]:1.0)[&label=567]:1.0,(280_137_Swine_H1N2_USA_2001:1.0,((281_263_Swine_H1N1_USA_2007:1.0,282_273_Swine_H1N2_USA_2003:1.0)[&label=571]:1.0,(283_151_Swine_H1N2_USA_2001:1.0,((284_259_Swine_H1N2_USA_2004:1.0,285_291_Swine_H1N2_SouthKorea_2005:1.0)[&label=574]:1.0,(286_266_Swine_H1N2_SouthKorea_2005:1.0,(287_298_Swine_H1N2_SouthKorea_2005:1.0,(288_265_Swine_H1N2_SouthKorea_2004:1.0,289_275_Swine_H1N2_SouthKorea_2006:1.0)[&label=577]:1.0)[&label=576]:1.0)[&label=575]:1.0)[&label=573]:1.0)[&label=572]:1.0)[&label=570]:1.0)[&label=569]:1.0)[&label=566]:1.0)[&label=565]:1.0)[&label=560]:1.0)[&label=559]:1.0)[&label=558]:1.0)[&label=557]:1.0)[&label=546]:1.0)[&label=543]:1.0)[&label=538]:1.0)[&label=536]:1.0)[&label=535]:1.0)[&label=533]:1.0)[&label=532]:1.0)[&label=530]:1.0)[&label=529]:1.0)[&label=528]:1.0)[&label=527]:1.0)[&label=526]:1.0)[&label=524]:1.0)[&label=522]:1.0)[&label=516]:1.0)[&label=513]:1.0)[&label=512]:1.0)[&label=511]:1.0)[&label=507]:1.0)[&label=506]:1.0)[&label=505]:1.0)[&label=504]:1.0)[&label=503]:1.0)[&label=500]:1.0)[&label=497]:1.0)[&label=490]:1.0)[&label=484]:1.0)[&label=480]:1.0)[&label=479]:1.0)[&label=478]:1.0)[&label=476]:1.0)[&label=475]:1.0)[&label=474]:1.0)[&label=473]:1.0)[&label=472]:1.0)[&label=471]:1.0)[&label=470]:1.0)[&label=469]:1.0)[&label=465]:1.0)[&label=372]:1.0)[&label=290];
299
end;
300
301
begin figtree;
302
set appearance.backgroundColorAttribute="User Selection";
303
set appearance.backgroundColour=#-1;
304
set appearance.branchColorAttribute="User Selection";
305
set appearance.branchLineWidth=1.0;
306
set appearance.foregroundColour=#-16777216;
307
set appearance.selectionColour=#-2144520576;
308
set branchLabels.colorAttribute="User Selection";
309
set branchLabels.displayAttribute="Branch times";
310
set branchLabels.fontName="sansserif";
311
set branchLabels.fontSize=8;
312
set branchLabels.fontStyle=0;
313
set branchLabels.isShown=false;
314
set branchLabels.significantDigits=4;
315
set layout.expansion=0;
316
set layout.layoutType="RECTILINEAR";
317
set layout.zoom=0;
318
set nodeBars.barWidth=4.0;
319
set nodeLabels.colorAttribute="User Selection";
320
set nodeLabels.displayAttribute="label";
321
set nodeLabels.fontName="sansserif";
322
set nodeLabels.fontSize=8;
323
set nodeLabels.fontStyle=0;
324
set nodeLabels.isShown=true;
325
set nodeLabels.significantDigits=4;
326
set polarLayout.alignTipLabels=false;
327
set polarLayout.angularRange=0;
328
set polarLayout.rootAngle=0;
329
set polarLayout.rootLength=100;
330
set polarLayout.showRoot=true;
331
set radialLayout.spread=0.0;
332
set rectilinearLayout.alignTipLabels=true;
333
set rectilinearLayout.curvature=0;
334
set rectilinearLayout.rootLength=100;
335
set scale.offsetAge=0.0;
336
set scale.rootAge=1.0;
337
set scale.scaleFactor=1.0;
338
set scale.scaleRoot=false;
339
set scaleAxis.automaticScale=true;
340
set scaleAxis.fontSize=8.0;
341
set scaleAxis.isShown=false;
342
set scaleAxis.lineWidth=1.0;
343
set scaleAxis.majorTicks=10.0;
344
set scaleAxis.origin=0.0;
345
set scaleAxis.reverseAxis=false;
346
set scaleAxis.showGrid=true;
347
set scaleAxis.significantDigits=4;
348
set scaleBar.automaticScale=true;
349
set scaleBar.fontSize=10.0;
350
set scaleBar.isShown=false;
351
set scaleBar.lineWidth=1.0;
352
set scaleBar.scaleRange=6.0;
353
set scaleBar.significantDigits=4;
354
set tipLabels.colorAttribute="User Selection";
355
set tipLabels.displayAttribute="Names";
356
set tipLabels.fontName="sansserif";
357
set tipLabels.fontSize=8;
358
set tipLabels.fontStyle=0;
359
set tipLabels.isShown=true;
360
set tipLabels.significantDigits=4;
361
set trees.order=true;
362
set trees.orderType="increasing";
363
set trees.rooting=false;
364
set trees.rootingType="User Selection";
365
set trees.transform=false;
366
set trees.transformType="cladogram";
367
end;
368
Loggerhead is a web-based interface for Breezy
Version: 2.0.1