~ubuntu-branches/ubuntu/wily/openms/wily

set(CONTRIB_CUSTOM_DIR CACHE DOC "DEPRECATED: User defined location of contrib dir. If left empty we assume the contrib to be in OpenMS/contrib! Please use CMAKE_FIND_ROOT_PATH instead!")

set(CONTRIB_DIR ${PROJECT_SOURCE_DIR}/contrib/ CACHE INTERNAL "Final contrib path after looking at custom_contrib_path. defaults to OpenMS/contrib")

IF ("${CMAKE_FIND_ROOT_PATH}" STREQUAL "")

IF (NOT "${CONTRIB_CUSTOM_DIR}" STREQUAL "")

MESSAGE("Please do no longer use -DCONTRIB_CUSTOM_DIR. This option is deprecated. Please use -DCMAKE_FIND_ROOT_PATH instead.")

LIST(INSERT CONTRIB_DIR 0 ${CONTRIB_CUSTOM_DIR})

ELSE()

# Append a few unusual default search directories for convenience

# if no FIND ROOT PATH was specified.

LIST(APPEND CONTRIB_DIR /opt/local /usr/local)

ENDIF()

# Append all contrib dirs to the (potentially empty) FIND_ROOT_PATH.

# This will be the final search order used by regular CMAKE modules (by default)

# and by the OpenMS macros (via CONTRIB_DIR).

LIST(APPEND CMAKE_FIND_ROOT_PATH "${CONTRIB_DIR}")

SET(TMP "")

FOREACH(CUSTOM_PATH IN ITEMS ${CMAKE_FIND_ROOT_PATH})

GET_FILENAME_COMPONENT(ABS_PATH ${CUSTOM_PATH} ABSOLUTE)

LIST(APPEND TMP ${ABS_PATH})

ENDFOREACH()

SET(CMAKE_FIND_ROOT_PATH "${TMP}")

SET(CONTRIB_DIR "${CMAKE_FIND_ROOT_PATH}")

MESSAGE(STATUS "CMake find root path: " ${CMAKE_FIND_ROOT_PATH})

set(CONTRIB_INCLUDE_DIR "" CACHE INTERNAL "contrib include dir")

set(CONTRIB_LIB_DIR "" CACHE INTERNAL "contrib lib dir")

foreach(CONTRIB_PATH ${CONTRIB_DIR})

list(APPEND CONTRIB_INCLUDE_DIR "${CONTRIB_PATH}/include/")

list(APPEND CONTRIB_LIB_DIR "${CONTRIB_PATH}/lib/")

endforeach()

message(STATUS "Contrib search directories: ${CONTRIB_DIR}")

message(STATUS "Contrib library directories: ${CONTRIB_LIB_DIR}")

message(STATUS "Contrib include directories: ${CONTRIB_INCLUDE_DIR}")

###########################################################

### find libs (for linking) ###

###########################################################

## on windows we need the *.lib versions (dlls alone won't do for linking)

## On Windows: never mix Release/Debug versions of libraries. Leads to strange segfaults, stack corruption etc, due to different runtime libs ...

## compiler-wise: use the same compiler for contrib and OpenMS!

#set which library extensions are preferred (we want static libraries)

if(NOT MSVC)

set(CMAKE_FIND_LIBRARY_SUFFIXES ".a;.so")

endif()

if (APPLE)

set(CMAKE_FIND_LIBRARY_SUFFIXES ".a;.dylib")

endif()

OPENMS_CHECKLIB(CONTRIB_XERCESC "xerces-c_3;xerces-c_static_3;libxerces-c;xerces-c" "xerces-c_3D;xerces-c_static_3D;libxerces-c;xerces-c" "xerces_c")

OPENMS_CHECKLIB(CONTRIB_GSL "gsl" "gsl_d;gsl" "GSL")

OPENMS_CHECKLIB(CONTRIB_GSLCBLAS "cblas;gslcblas" "cblas_d;gslcblas" "GSL-CBLAS")

## BOOST

#if (WIN32 OR APPLE)

set(Boost_USE_STATIC_LIBS ON)

#else()

# set(Boost_USE_STATIC_LIBS OFF)

#endif()

set(Boost_USE_MULTITHREADED ON)

set(Boost_USE_STATIC_RUNTIME OFF)

FIND_PACKAGE(Boost 1.42.0 REQUIRED iostreams date_time math_c99)

if(Boost_FOUND)

INCLUDE_DIRECTORIES(${Boost_INCLUDE_DIRS})

message(STATUS "Found Boost version ${Boost_MAJOR_VERSION}.${Boost_MINOR_VERSION}.${Boost_SUBMINOR_VERSION}" )

else()

message(FATAL_ERROR "Boost or one of its components not found!")

endif()

## SEQAN

FIND_PACKAGE(SEQAN 1.3.1)

if(SEQAN_FOUND)

INCLUDE_DIRECTORIES(${SEQAN_INCLUDE_DIRS})

message(STATUS "Found SEQAN version ${SEQAN_VERSION_MAJOR}.${SEQAN_VERSION_MINOR}.${SEQAN_VERSION_PATCH}" )

else()

message(FATAL_ERROR "SeqAn could not be found. Please install it from www.seqan.de or download and install the OpenMS contrib package.")

endif()

## libsvm

if (WIN32) ## find manually on Windows, as find_package() does not know about debug lib

OPENMS_CHECKLIB(LIBSVM_LIBRARY "svm" "svmd;svm" "libSVM")

endif()

FIND_PACKAGE(libSVM 2.91) ## will not overwrite LIBSVM_LIBRARY if defined already

if (LIBSVM_FOUND)

INCLUDE_DIRECTORIES(${LIBSVM_INCLUDE_DIRS})

message(STATUS "Found LibSVM version " ${LIBSVM_VERSION})

set(CF_OPENMS_LIBSVM_VERSION_MAJOR ${LIBSVM_MAJOR_VERSION})

set(CF_OPENMS_LIBSVM_VERSION_MINOR ${LIBSVM_MINOR_VERSION})

100

set(CF_OPENMS_LIBSVM_VERSION ${LIBSVM_VERSION})

101

set(DEP_LIBSVM_LIBRARY ${LIBSVM_LIBRARY} ${LIBSVM_LIBRARIES}) # combine for consistent use later

102

else()

103

message(FATAL_ERROR "LibSVM not found!")

104

endif()

105

106

if (${USE_COINOR})

107

set(CF_USECOINOR 1)

108

OPENMS_CHECKLIB(CONTRIB_CBC1 "libCbc;Cbc" "libCbcd;Cbc" "COIN-OR Cbc")

109

OPENMS_CHECKLIB(CONTRIB_CBC2 "libCgl;Cgl" "libCgld;Cgl" "COIN-OR Cgl")

110

OPENMS_CHECKLIB(CONTRIB_CBC3 "libClp;Clp" "libClpd;Clp" "COIN-OR Clp")

111

OPENMS_CHECKLIB(CONTRIB_CBC4 "libCoinUtils;CoinUtils" "libCoinUtilsd;CoinUtils" "COIN-OR Utils")

112

OPENMS_CHECKLIB(CONTRIB_CBC5 "libOsi;Osi" "libOsid;Osi" "COIN-OR Osi")

113

OPENMS_CHECKLIB(CONTRIB_CBC6 "libOsiClp;OsiClp" "libOsiClpd;OsiClp" "COIN-OR OsiClp")

114

set(CONTRIB_CBC ${CONTRIB_CBC1} ${CONTRIB_CBC2} ${CONTRIB_CBC3} ${CONTRIB_CBC4} ${CONTRIB_CBC5} ${CONTRIB_CBC6} )

115

else()

116

set(CF_USECOINOR 0)

117

set(CONTRIB_CBC)

118

endif()

119

120

OPENMS_CHECKLIB(CONTRIB_GLPK "glpk" "glpkd;glpk" "GLPK")

121

122

OPENMS_CHECKLIB(CONTRIB_ZLIB "zlib;z" "zlib_d;zlib;z" "ZLIB")

123

OPENMS_CHECKLIB(CONTRIB_BZIP2 "libbz2;bz2" "libbz2d;libbz2;bz2" "BZIP2")

124

125

if(MSVC)

126

## needed to locate libs (put this above ADD_LIBRARY() - otherwise it will not work)

127

link_directories(${CONTRIB_LIB_DIR})

128

endif()

129

130

INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/include/)

131

INCLUDE_DIRECTORIES(${PROJECT_BINARY_DIR}/include/) ## for configured files, e.g. config.h

132

INCLUDE_DIRECTORIES(${CONTRIB_INCLUDE_DIR})

133

134

#except for the contrib libs, prefer shared libraries

135

if(NOT MSVC AND NOT APPLE)

136

set(CMAKE_FIND_LIBRARY_SUFFIXES ".so;.a")

137

endif()

138

139

140

################################

141

## QT

142

################################

143

SET(QT_MIN_VERSION "4.5.0")

144

## obsolete when CMake MinRequiredVersion becomes >= 2.8.5

145

if ("${CMAKE_VERSION}" VERSION_LESS "2.8.5" AND NOT(${CMAKE_SYSTEM_NAME} MATCHES "Darwin")) ##

146

set(phonon_extra QtPhonon)

147

message(STATUS "Trying to find Phonon explicitly... If you run into trouble with Qt Phonon, try to disable it in build system")

148

else()

149

set(phonon_extra)

150

message(STATUS "Not trying to find Phonon explicitly... If you run into trouble with Qt Phonon, try to enable it in build system")

151

endif()

152

FIND_PACKAGE(Qt4 REQUIRED QtXML QtNetwork QtSQL QtOpenGL QtSVG QtTest QtWebKit ${phonon_extra})

153

154

IF (NOT QT4_FOUND)

155

message(STATUS "QT4 not found!")

156

message(FATAL_ERROR "To find a custom Qt installation use: cmake <..more options..> -D QT_QMAKE_EXECUTABLE='<path_to_qmake(.exe)' <src-dir>")

157

ENDIF()

158

INCLUDE(${QT_USE_FILE})

159

INCLUDE(UseQt4)

160

INCLUDE_DIRECTORIES(${QT_INCLUDES})

161

162

## FIX

163

## - QT4 library list (VS2010 requires semicolon separated lists, previous versions use space, thus a lib named "opengl32.lib glu32.lib gdi32.lib user32.lib delayimp.lib" now poses a problem)

164

## - this fix will be obsolete with CMake 2.8.1

165

set(QT_LIBRARIES_TMP "")

166

foreach (qtlib ${QT_LIBRARIES})

167

if (${qtlib} STREQUAL "opengl32.lib glu32.lib gdi32.lib user32.lib delayimp.lib")

168

list(APPEND QT_LIBRARIES_TMP "opengl32.lib;glu32.lib;gdi32.lib;user32.lib;delayimp.lib")

169

message(STATUS "Fixing QT library list... done")

170

else()

171

list(APPEND QT_LIBRARIES_TMP ${qtlib})

172

endif()

173

endforeach()

174

set(QT_LIBRARIES ${QT_LIBRARIES_TMP})

175

## ENDFIX

176

177

MESSAGE(STATUS "QT qmake at ${QT_QMAKE_EXECUTABLE}")

178

MESSAGE(STATUS "QT moc at ${QT_MOC_EXECUTABLE}")

179

MESSAGE(STATUS "QT uic at ${QT_UIC_EXECUTABLE}")

180

MESSAGE(STATUS "QT includes at ${QT_INCLUDES}")

181

MESSAGE(STATUS "QT libraries at ${QT_LIBRARIES}")

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