~njansson/dolfin/hpc

« back to all changes in this revision

Viewing changes to src/bench/ode/reaction/README

Committer: Anders Logg
Date: 2007-01-10 09:04:44 UTC
mfrom: (1689.1.221 trunk)
Revision ID: logg@simula.no-20070110090444-ecyux3n1qnei4i8h

Remove old head

files added:
doc/manual/chapters/design.tex

doc/manual/dia

doc/manual/dia/class-diagram-la.dia

doc/manual/eps/class-diagram-la.eps

dolfin.pc.in

m4/ax_boost_base.m4

m4/ax_compiler_vendor.m4

m4/libtool.m4

m4/libxml.m4

numpy.conf

petsc.conf

slepc.conf

src/bench

src/bench/Makefile.am

src/bench/Makefile.in

src/bench/README

src/bench/fem

src/bench/fem/Makefile.am

src/bench/fem/Makefile.in

src/bench/fem/assembly

src/bench/fem/assembly/AdvectionOperator_3D_3_FER.form

src/bench/fem/assembly/AdvectionOperator_3D_3_FER.h

src/bench/fem/assembly/AdvectionOperator_3D_3_FFC.form

src/bench/fem/assembly/AdvectionOperator_3D_3_FFC.h

src/bench/fem/assembly/Makefile

src/bench/fem/assembly/README

src/bench/fem/assembly/bench.log

src/bench/fem/assembly/bench.py

src/bench/fem/assembly/main.cpp

src/bench/fem/convergence

src/bench/fem/convergence/Makefile

src/bench/fem/convergence/Poisson2D_1.form

src/bench/fem/convergence/Poisson2D_1.h

src/bench/fem/convergence/Poisson2D_2.form

src/bench/fem/convergence/Poisson2D_2.h

src/bench/fem/convergence/Poisson2D_3.form

src/bench/fem/convergence/Poisson2D_3.h

src/bench/fem/convergence/Poisson2D_4.form

src/bench/fem/convergence/Poisson2D_4.h

src/bench/fem/convergence/Poisson2D_5.form

src/bench/fem/convergence/Poisson2D_5.h

src/bench/fem/convergence/Poisson3D_1.form

src/bench/fem/convergence/Poisson3D_1.h

src/bench/fem/convergence/Poisson3D_2.form

src/bench/fem/convergence/Poisson3D_2.h

src/bench/fem/convergence/Poisson3D_3.form

src/bench/fem/convergence/Poisson3D_3.h

src/bench/fem/convergence/Poisson3D_4.form

src/bench/fem/convergence/Poisson3D_4.h

src/bench/fem/convergence/Poisson3D_5.form

src/bench/fem/convergence/Poisson3D_5.h

src/bench/fem/convergence/README

src/bench/fem/convergence/bench.log

src/bench/fem/convergence/bench.py

src/bench/fem/convergence/main.cpp

src/bench/la

src/bench/la/Makefile.am

src/bench/la/Makefile.in

src/bench/la/bench.log

src/bench/la/bench.py

src/bench/la/sparse-matrix

src/bench/la/sparse-matrix/Makefile

src/bench/la/sparse-matrix/Poisson.form

src/bench/la/sparse-matrix/Poisson.h

src/bench/la/sparse-matrix/VectorPoisson.form

src/bench/la/sparse-matrix/VectorPoisson.h

src/bench/la/sparse-matrix/main.cpp

src/bench/la/vector

src/bench/la/vector/Makefile

src/bench/la/vector/main.cpp

src/bench/mesh

src/bench/mesh/Makefile

src/bench/mesh/bench.log

src/bench/mesh/bench.py

src/bench/mesh/main.cpp

src/bench/ode

src/bench/ode/Makefile.am

src/bench/ode/Makefile.in

src/bench/ode/reaction

src/bench/ode/reaction/Makefile

src/bench/ode/reaction/README

src/bench/ode/reaction/bench-domain.log

src/bench/ode/reaction/bench-domain.py

src/bench/ode/reaction/bench-overhead.log

src/bench/ode/reaction/bench-overhead.py

src/bench/ode/reaction/bench-plot.py

src/bench/ode/reaction/bench-tol.log

src/bench/ode/reaction/bench-tol.py

src/bench/ode/reaction/bench.log

src/bench/ode/reaction/bench.py

src/bench/ode/reaction/benchutil.py

src/bench/ode/reaction/checkerror.py

src/bench/ode/reaction/main.cpp

src/bench/ode/reaction/parameters-bench.xml

src/bench/ode/reaction/parameters-plot.xml

src/bench/ode/reaction/parameters-reference.xml

src/bench/ode/reaction/reference_1000.data

src/bench/ode/reaction/reference_16000.data

src/bench/ode/reaction/reference_2000.data

src/bench/ode/reaction/reference_4000.data

src/bench/ode/reaction/reference_8000.data

src/bench/ode/wave

src/bench/ode/wave/Makefile

src/bench/ode/wave/bench.log

src/bench/ode/wave/bench.py

src/bench/ode/wave/main.cpp

src/bench/ode/wave/parameters-bench.xml

src/bench/ode/wave/slit.xml.gz

src/demo/mesh/plot.py

src/demo/meshfunction

src/demo/meshfunction/Makefile

src/demo/meshfunction/main.cpp

src/demo/meshfunction/mesh2D.xml.gz

src/demo/meshfunction/meshfunction.xml

src/demo/nls/cahn-hilliard

src/demo/nls/cahn-hilliard/CahnHilliard2D.form

src/demo/nls/cahn-hilliard/CahnHilliard2D.h

src/demo/nls/cahn-hilliard/CahnHilliard3D.form

src/demo/nls/cahn-hilliard/CahnHilliard3D.h

src/demo/nls/cahn-hilliard/Makefile

src/demo/nls/cahn-hilliard/main.cpp

src/demo/nls/cahn-hilliard/plot.py

src/demo/nls/nonlinearpoisson/plot.py

src/demo/ode/aliev-panfilov

src/demo/ode/aliev-panfilov/Makefile

src/demo/ode/aliev-panfilov/main.cpp

src/demo/ode/aliev-panfilov/plot.py

src/demo/ode/complex/plot.py

src/demo/ode/courtemanche

src/demo/ode/courtemanche/Makefile

src/demo/ode/courtemanche/main.cpp

src/demo/ode/courtemanche/plot.py

src/demo/ode/harmonic

src/demo/ode/harmonic/Makefile

src/demo/ode/harmonic/main.cpp

src/demo/ode/harmonic/plot.py

src/demo/ode/homotopy/simple/plot.py

src/demo/ode/lorenz/plot.py

src/demo/ode/stiff/plot.py

src/demo/pde/bidomain

src/demo/pde/bidomain/Bidomain.form

src/demo/pde/bidomain/Bidomain.h

src/demo/pde/bidomain/Makefile

src/demo/pde/bidomain/main.cpp

src/demo/pde/convection-diffusion/plot.py

src/demo/pde/dg

src/demo/pde/dg/Makefile

src/demo/pde/dg/Poisson.form

src/demo/pde/dg/Poisson.h

src/demo/pde/dg/Projection.form

src/demo/pde/dg/Projection.h

src/demo/pde/dg/main.cpp

src/demo/pde/dg/plot.py

src/demo/pde/elasticity/plot.py

src/demo/pde/functional

src/demo/pde/functional/EnergyNorm.form

src/demo/pde/functional/EnergyNorm.h

src/demo/pde/functional/Makefile

src/demo/pde/functional/main.cpp

src/demo/pde/nonlinear/nonlinear-poisson/plot.py

src/demo/pde/poisson/plot.py

src/demo/pde/stokes/stabilized/plot.py

src/demo/pde/stokes/taylor-hood/plot.py

src/demo/scripting/pydolfin/output.py

src/demo/scripting/pydolfin/projection

src/demo/scripting/pydolfin/projection/projectiondemo.py

src/demo/scripting/pydolfin/solvers/elasticity-tpde

src/demo/scripting/pydolfin/solvers/elasticity-tpde/composite

src/demo/scripting/pydolfin/solvers/elasticity-tpde/composite/Coefficients.h

src/demo/scripting/pydolfin/solvers/elasticity-tpde/composite/Coefficients.i

src/demo/scripting/pydolfin/solvers/elasticity-tpde/composite/Elasticity.form

src/demo/scripting/pydolfin/solvers/elasticity-tpde/composite/elasticityform.py

src/demo/scripting/pydolfin/solvers/elasticity-tpde/composite/elasticitypde.py

src/demo/scripting/pydolfin/solvers/elasticity-tpde/composite/elasticitysolver.py

src/demo/scripting/pydolfin/solvers/elasticity-tpde/composite/plot.py

src/demo/scripting/pydolfin/solvers/elasticity-tpde/composite/tetmesh-4.xml.gz

src/demo/scripting/pydolfin/solvers/elasticity-tpde/manual

src/demo/scripting/pydolfin/solvers/elasticity-tpde/manual/Elasticity.form

src/demo/scripting/pydolfin/solvers/elasticity-tpde/manual/elasticitypde.py

src/demo/scripting/pydolfin/solvers/elasticity-tpde/manual/elasticitysolver.py

src/demo/scripting/pydolfin/solvers/elasticity-tpde/manual/plot.py

src/demo/scripting/pydolfin/solvers/elasticity-tpde/manual/tetmesh-4.xml.gz

src/demo/scripting/pydolfin/solvers/elasticity-updated

src/demo/scripting/pydolfin/solvers/elasticity-updated/diff

src/demo/scripting/pydolfin/solvers/elasticity-updated/diff/ElasticityLoad.form

src/demo/scripting/pydolfin/solvers/elasticity-updated/diff/ElasticityUpdatedEq.form

src/demo/scripting/pydolfin/solvers/elasticity-updated/diff/ElasticityUpdatedStress.form

src/demo/scripting/pydolfin/solvers/elasticity-updated/diff/diffpde.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/diff/geometry.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/diff/plot.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/diff/problem.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/diff/tetmesh-1c.xml.gz

src/demo/scripting/pydolfin/solvers/elasticity-updated/diff/transform.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/direct

src/demo/scripting/pydolfin/solvers/elasticity-updated/direct/ElasticityDirect.form

src/demo/scripting/pydolfin/solvers/elasticity-updated/direct/ElasticityLoad.form

src/demo/scripting/pydolfin/solvers/elasticity-updated/direct/directpde.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/direct/geometry.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/direct/plot.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/direct/problem.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/direct/tetmesh-1c.xml.gz

src/demo/scripting/pydolfin/solvers/elasticity-updated/direct/transform.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/Coefficients.h

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/Coefficients.i

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/ElasticityLoad.form

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/ElasticityUpdatedEq.form

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/ElasticityUpdatedStress.form

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/diffpde.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/geometry.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/plot.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/problem.py

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/tetmesh-1c.xml.gz

src/demo/scripting/pydolfin/solvers/elasticity-updated/plast/transform.py

src/demo/scripting/pydolfin/solvers/poisson/Poisson.form

src/demo/solvers/convdiff/plot.py

src/demo/solvers/elasticity-updated/plot.py

src/demo/solvers/elasticity-updated/tetmesh-1c.xml.gz

src/demo/solvers/elasticity/plot.py

src/demo/solvers/heat/plot.py

src/demo/solvers/plasticity

src/demo/solvers/plasticity/Makefile

src/demo/solvers/plasticity/main.cpp

src/demo/solvers/plasticity/plot.py

src/demo/solvers/poisson/plot.py

src/demo/solvers/stokes/plot.py

src/kernel/fem/DofMap.cpp

src/kernel/fem/dolfin/DofMap.h

src/kernel/io/NewXMLMesh.cpp

src/kernel/io/XMLMeshFunction.cpp

src/kernel/io/dolfin/NewXMLMesh.h

src/kernel/io/dolfin/XMLMeshFunction.h

src/kernel/la/PETScEigenvalueSolver.cpp

src/kernel/la/PETScKrylovMatrix.cpp

src/kernel/la/PETScKrylovSolver.cpp

src/kernel/la/PETScLUSolver.cpp

src/kernel/la/PETScMatrix.cpp

src/kernel/la/PETScPreconditioner.cpp

src/kernel/la/PETScVector.cpp

src/kernel/la/dolfin/DenseMatrix.h

src/kernel/la/dolfin/DenseVector.h

src/kernel/la/dolfin/GenericMatrix.h

src/kernel/la/dolfin/GenericVector.h

src/kernel/la/dolfin/KrylovMethod.h

src/kernel/la/dolfin/LUSolver.h

src/kernel/la/dolfin/PETScEigenvalueSolver.h

src/kernel/la/dolfin/PETScKrylovMatrix.h

src/kernel/la/dolfin/PETScKrylovSolver.h

src/kernel/la/dolfin/PETScLUSolver.h

src/kernel/la/dolfin/PETScLinearSolver.h

src/kernel/la/dolfin/PETScMatrix.h

src/kernel/la/dolfin/PETScPreconditioner.h

src/kernel/la/dolfin/PETScVector.h

src/kernel/la/dolfin/SparseMatrix.h

src/kernel/la/dolfin/SparseVector.h

src/kernel/la/dolfin/uBlasDenseMatrix.h

src/kernel/la/dolfin/uBlasDummyPreconditioner.h

src/kernel/la/dolfin/uBlasILUPreconditioner.h

src/kernel/la/dolfin/uBlasKrylovMatrix.h

src/kernel/la/dolfin/uBlasKrylovSolver.h

src/kernel/la/dolfin/uBlasLUSolver.h

src/kernel/la/dolfin/uBlasLinearSolver.h

src/kernel/la/dolfin/uBlasMatrix.h

src/kernel/la/dolfin/uBlasPreconditioner.h

src/kernel/la/dolfin/uBlasSparseMatrix.h

src/kernel/la/dolfin/uBlasVector.h

src/kernel/la/dolfin/ublas.h

src/kernel/la/uBlasDummyPreconditioner.cpp

src/kernel/la/uBlasILUPreconditioner.cpp

src/kernel/la/uBlasKrylovMatrix.cpp

src/kernel/la/uBlasKrylovSolver.cpp

src/kernel/la/uBlasLUSolver.cpp

src/kernel/la/uBlasVector.cpp

src/kernel/mesh/BoundaryComputation.cpp

src/kernel/mesh/BoundaryMesh.cpp

src/kernel/mesh/CellType.cpp

src/kernel/mesh/Facet.cpp

src/kernel/mesh/GeometricPredicates.cpp

src/kernel/mesh/Interval.cpp

src/kernel/mesh/LocalMeshCoarsening.cpp

src/kernel/mesh/LocalMeshRefinement.cpp

src/kernel/mesh/MeshConnectivity.cpp

src/kernel/mesh/MeshEditor.cpp

src/kernel/mesh/MeshEntity.cpp

src/kernel/mesh/MeshEntityIterator.cpp

src/kernel/mesh/MeshGeometry.cpp

src/kernel/mesh/MeshTopology.cpp

src/kernel/mesh/TopologyComputation.cpp

src/kernel/mesh/UniformMeshRefinement.cpp

src/kernel/mesh/dolfin/BoundaryComputation.h

src/kernel/mesh/dolfin/BoundaryMesh.h

src/kernel/mesh/dolfin/CellType.h

src/kernel/mesh/dolfin/Facet.h

src/kernel/mesh/dolfin/GeometricPredicates.h

src/kernel/mesh/dolfin/Interval.h

src/kernel/mesh/dolfin/LocalMeshCoarsening.h

src/kernel/mesh/dolfin/LocalMeshRefinement.h

src/kernel/mesh/dolfin/MeshConnectivity.h

src/kernel/mesh/dolfin/MeshEditor.h

src/kernel/mesh/dolfin/MeshEntity.h

src/kernel/mesh/dolfin/MeshEntityIterator.h

src/kernel/mesh/dolfin/MeshFunction.h

src/kernel/mesh/dolfin/MeshGeometry.h

src/kernel/mesh/dolfin/MeshTopology.h

src/kernel/mesh/dolfin/TopologyComputation.h

src/kernel/mesh/dolfin/UniformMeshRefinement.h

src/kernel/mesh/predicates_init.h

src/kernel/mesh/rounding.h

src/kernel/mf

src/kernel/mf/Makefile.am

src/kernel/mf/Makefile.in

src/kernel/mf/MatrixFactory.cpp

src/kernel/mf/dolfin

src/kernel/mf/dolfin/ConvectionMatrix.h

src/kernel/mf/dolfin/LoadVector.h

src/kernel/mf/dolfin/Makefile.am

src/kernel/mf/dolfin/Makefile.in

src/kernel/mf/dolfin/MassMatrix.h

src/kernel/mf/dolfin/MatrixFactory.h

src/kernel/mf/dolfin/StiffnessMatrix.h

src/kernel/mf/dolfin/dolfin_mf.h

src/kernel/mf/ffc-forms

src/kernel/mf/ffc-forms/ConvectionMatrix2D.form

src/kernel/mf/ffc-forms/ConvectionMatrix2D.h

src/kernel/mf/ffc-forms/ConvectionMatrix3D.form

src/kernel/mf/ffc-forms/ConvectionMatrix3D.h

src/kernel/mf/ffc-forms/LoadVector2D.form

src/kernel/mf/ffc-forms/LoadVector2D.h

src/kernel/mf/ffc-forms/LoadVector3D.form

src/kernel/mf/ffc-forms/LoadVector3D.h

src/kernel/mf/ffc-forms/MassMatrix2D.form

src/kernel/mf/ffc-forms/MassMatrix2D.h

src/kernel/mf/ffc-forms/MassMatrix3D.form

src/kernel/mf/ffc-forms/MassMatrix3D.h

src/kernel/mf/ffc-forms/StiffnessMatrix2D.form

src/kernel/mf/ffc-forms/StiffnessMatrix2D.h

src/kernel/mf/ffc-forms/StiffnessMatrix3D.form

src/kernel/mf/ffc-forms/StiffnessMatrix3D.h

src/kernel/pde/TimeDependentPDE.cpp

src/kernel/pde/dolfin/TimeDependentPDE.h

src/modules/navierstokes/dolfin/NSEDualContinuity2D.form

src/modules/navierstokes/dolfin/NSEDualContinuity2D.h

src/modules/navierstokes/dolfin/NSEDualContinuity3D.form

src/modules/navierstokes/dolfin/NSEDualContinuity3D.h

src/modules/navierstokes/dolfin/NSEDualMomentum2D.form

src/modules/navierstokes/dolfin/NSEDualMomentum2D.h

src/modules/navierstokes/dolfin/NSEDualMomentum3D.form

src/modules/plasticity

src/modules/plasticity/DruckerPrager.cpp

src/modules/plasticity/Makefile.am

src/modules/plasticity/Makefile.in

src/modules/plasticity/PlasticityModel.cpp

src/modules/plasticity/PlasticityProblem.cpp

src/modules/plasticity/PlasticitySolver.cpp

src/modules/plasticity/ReturnMapping.cpp

src/modules/plasticity/VonMises.cpp

src/modules/plasticity/dolfin

src/modules/plasticity/dolfin/DruckerPrager.h

src/modules/plasticity/dolfin/Makefile.am

src/modules/plasticity/dolfin/Makefile.in

src/modules/plasticity/dolfin/Output2D.form

src/modules/plasticity/dolfin/Output2D.h

src/modules/plasticity/dolfin/Output3D.form

src/modules/plasticity/dolfin/Output3D.h

src/modules/plasticity/dolfin/Plas2D.form

src/modules/plasticity/dolfin/Plas2D.h

src/modules/plasticity/dolfin/Plas3D.form

src/modules/plasticity/dolfin/Plas3D.h

src/modules/plasticity/dolfin/PlasticityModel.h

src/modules/plasticity/dolfin/PlasticityProblem.h

src/modules/plasticity/dolfin/PlasticitySolver.h

src/modules/plasticity/dolfin/ReturnMapping.h

src/modules/plasticity/dolfin/Strain2D.form

src/modules/plasticity/dolfin/Strain2D.h

src/modules/plasticity/dolfin/Strain3D.form

src/modules/plasticity/dolfin/Strain3D.h

src/modules/plasticity/dolfin/Tangent2D.form

src/modules/plasticity/dolfin/Tangent2D.h

src/modules/plasticity/dolfin/Tangent3D.form

src/modules/plasticity/dolfin/Tangent3D.h

src/modules/plasticity/dolfin/VonMises.h

src/modules/plasticity/dolfin/dolfin_plasticity.h

src/modules/plasticity/dolfin/ep_strain2D.form

src/modules/plasticity/dolfin/ep_strain2D.h

src/modules/plasticity/dolfin/ep_strain3D.form

src/modules/plasticity/dolfin/ep_strain3D.h

src/modules/plasticity/dolfin/p_strain2D.form

src/modules/plasticity/dolfin/p_strain2D.h

src/modules/plasticity/dolfin/p_strain3D.form

src/modules/plasticity/dolfin/p_strain3D.h

src/pydolfin/assemble.py

src/pydolfin/dolfin_fem.i

src/pydolfin/dolfin_fem_post.i

src/pydolfin/dolfin_glue.cpp

src/pydolfin/dolfin_glue.h

src/pydolfin/dolfin_la.i

src/pydolfin/dolfin_mesh.i

src/pydolfin/dolfin_mesh_post.i

src/pydolfin/dolfin_mesh_pre.i

src/pydolfin/dolfin_ode.i

src/pydolfin/projection.py

src/test/la

src/test/la/__init__.py

src/test/la/algebraUBlas.py

src/test/la/createUBlas.py

src/test/la/solverUBlas.py

src/test/la/test.py

src/test/mesh

src/test/mesh/__init__.py

src/test/mesh/test.py

src/test/passembly

src/test/passembly/Makefile

src/test/passembly/main.cpp

src/test/test.py

src/test/tmp

src/test/tmp/L2Norm.form

src/test/tmp/L2Norm.h

src/test/tmp/Makefile

src/test/tmp/main.cpp

src/test/tmp/newmesh.xml.gz

src/test/tmp/oldmesh.xml.gz

src/utils/convert/test_gmsh.msh

src/utils/convert/test_old_xml.xml

src/utils/convert/test_tetgen.mesh

src/utils/emacs

src/utils/emacs/macros

src/utils/swig

src/utils/swig/Makefile.am

src/utils/swig/Makefile.in

src/utils/swig/dolfin-swig

src/utils/vim

src/utils/vim/macros

src/utils/xml/convertall

files removed:
doc/misc/cvs

doc/misc/releasing

scripts/preparedist

src/config

src/config/Makefile.am

src/config/Makefile.in

src/config/config.sh

src/config/dolfin-config.template

src/config/dolfin-swig

src/config/dolfin-swig.template

src/config/swig.sh

src/demo/fem/convergence

src/demo/fem/convergence/Makefile

src/demo/fem/convergence/Poisson2D_1.form

src/demo/fem/convergence/Poisson2D_1.h

src/demo/fem/convergence/Poisson2D_2.form

src/demo/fem/convergence/Poisson2D_2.h

src/demo/fem/convergence/Poisson2D_3.form

src/demo/fem/convergence/Poisson2D_3.h

src/demo/fem/convergence/Poisson2D_4.form

src/demo/fem/convergence/Poisson2D_4.h

src/demo/fem/convergence/Poisson2D_5.form

src/demo/fem/convergence/Poisson2D_5.h

src/demo/fem/convergence/Poisson3D_1.form

src/demo/fem/convergence/Poisson3D_1.h

src/demo/fem/convergence/Poisson3D_2.form

src/demo/fem/convergence/Poisson3D_2.h

src/demo/fem/convergence/Poisson3D_3.form

src/demo/fem/convergence/Poisson3D_3.h

src/demo/fem/convergence/Poisson3D_4.form

src/demo/fem/convergence/Poisson3D_4.h

src/demo/fem/convergence/Poisson3D_5.form

src/demo/fem/convergence/Poisson3D_5.h

src/demo/fem/convergence/README

src/demo/fem/convergence/main.cpp

src/demo/ode/bistable

src/demo/ode/bistable/Makefile

src/demo/ode/bistable/README

src/demo/ode/bistable/main.cpp

src/demo/ode/bistable/mesh.xml.gz

src/demo/ode/homotopy/economy/plotsolution.m

src/demo/ode/homotopy/simple/plotsolution.m

src/demo/ode/lorenz/plotlaps.m

src/demo/ode/mechanical

src/demo/ode/mechanical/Makefile

src/demo/ode/mechanical/main.cpp

src/demo/ode/modeling

src/demo/ode/modeling/Makefile.am

src/demo/ode/modeling/Makefile.in

src/demo/ode/modeling/lattice

src/demo/ode/modeling/lattice/Makefile

src/demo/ode/modeling/lattice/main.cpp

src/demo/ode/modeling/lattice/plotsolution.m

src/demo/ode/modeling/simple

src/demo/ode/modeling/simple/Makefile

src/demo/ode/modeling/simple/main.cpp

src/demo/ode/modeling/simple/plotsolution.m

src/demo/ode/reaction

src/demo/ode/reaction/Makefile

src/demo/ode/reaction/README

src/demo/ode/reaction/bench-parameters.xml

src/demo/ode/reaction/bench.log

src/demo/ode/reaction/checkerror-debug.py

src/demo/ode/reaction/checkerror.py

src/demo/ode/reaction/debug-parameters.xml

src/demo/ode/reaction/domain.log

src/demo/ode/reaction/main.cpp

src/demo/ode/reaction/plot_reaction.py

src/demo/ode/reaction/reference-gamma-100.data

src/demo/ode/reaction/reference-gamma-1000-N-20.data

src/demo/ode/reaction/reference-gamma-1000.data

src/demo/ode/reaction/run-bench.py

src/demo/ode/reaction/run-debug.py

src/demo/ode/reaction/run-domain.py

src/demo/ode/residual

src/demo/ode/residual/Makefile

src/demo/ode/residual/main.cpp

src/demo/ode/residual/plot.py

src/demo/ode/residual/run-debug.py

src/demo/ode/stiff/plotsolution.m

src/demo/ode/test

src/demo/ode/test/Makefile

src/demo/ode/test/main.cpp

src/demo/ode/wave

src/demo/ode/wave/Makefile

src/demo/ode/wave/main.cpp

src/demo/ode/wave/plotsolution.m

src/demo/ode/wave/slit.xml.gz

src/demo/scripting/pydolfin/solvers/elasticity

src/demo/scripting/pydolfin/solvers/elasticity/Elasticity.form

src/demo/scripting/pydolfin/solvers/elasticity/ElasticityMass.form

src/demo/scripting/pydolfin/solvers/elasticity/elasticitysolver.py

src/demo/scripting/pydolfin/solvers/elasticity/tetmesh-4.xml.gz

src/demo/scripting/pydolfin/solvers/poisson/Poisson2D.form

src/demo/solvers/convdiff/visualize_convdiff.py

src/demo/solvers/elasticity-updated/plotsolution.sh

src/demo/solvers/elasticity-updated/template.pov

src/demo/solvers/elasticity/pde2ko.m

src/demo/solvers/elasticity/plotsolution.sh

src/demo/solvers/elasticity/template.pov

src/demo/solvers/elasticity/writeko.m

src/demo/solvers/elasticity/writeko.sh

src/demo/solvers/stokes/plotsolution.m

src/kernel/common/dolfin/PArray.h

src/kernel/common/dolfin/PList.h

src/kernel/common/dolfin/Table.h

src/kernel/common/dolfin/Tensor.h

src/kernel/fem/LoadVector.cpp

src/kernel/fem/MassMatrix.cpp

src/kernel/fem/StiffnessMatrix.cpp

src/kernel/fem/dolfin/LoadVector.h

src/kernel/fem/dolfin/MassMatrix.h

src/kernel/fem/dolfin/MassMatrix2D.form

src/kernel/fem/dolfin/MassMatrix2D.h

src/kernel/fem/dolfin/MassMatrix3D.form

src/kernel/fem/dolfin/MassMatrix3D.h

src/kernel/fem/dolfin/StiffnessMatrix.h

src/kernel/fem/dolfin/StiffnessMatrix2D.form

src/kernel/fem/dolfin/StiffnessMatrix2D.h

src/kernel/fem/dolfin/StiffnessMatrix3D.form

src/kernel/fem/dolfin/StiffnessMatrix3D.h

src/kernel/la/EigenvalueSolver.cpp

src/kernel/la/KrylovSolver.cpp

src/kernel/la/LinearSolver.cpp

src/kernel/la/Matrix.cpp

src/kernel/la/Preconditioner.cpp

src/kernel/la/Vector.cpp

src/kernel/la/VirtualMatrix.cpp

src/kernel/la/dolfin/EigenvalueSolver.h

src/kernel/la/dolfin/VirtualMatrix.h

src/kernel/mesh/Boundary.cpp

src/kernel/mesh/BoundaryData.cpp

src/kernel/mesh/BoundaryInit.cpp

src/kernel/mesh/CellIterator.cpp

src/kernel/mesh/EdgeIterator.cpp

src/kernel/mesh/EdgeRefData.cpp

src/kernel/mesh/FaceIterator.cpp

src/kernel/mesh/GenericCell.cpp

src/kernel/mesh/MeshInit.cpp

src/kernel/mesh/MeshIterator.cpp

src/kernel/mesh/MeshRefinement.cpp

src/kernel/mesh/TetMeshRefinement.cpp

src/kernel/mesh/TriMeshRefinement.cpp

src/kernel/mesh/VertexIterator.cpp

src/kernel/mesh/dolfin/Boundary.h

src/kernel/mesh/dolfin/BoundaryData.h

src/kernel/mesh/dolfin/BoundaryInit.h

src/kernel/mesh/dolfin/CellIterator.h

src/kernel/mesh/dolfin/CellRefData.h

src/kernel/mesh/dolfin/EdgeIterator.h

src/kernel/mesh/dolfin/EdgeRefData.h

src/kernel/mesh/dolfin/FaceIterator.h

src/kernel/mesh/dolfin/GenericCell.h

src/kernel/mesh/dolfin/MeshInit.h

src/kernel/mesh/dolfin/MeshIterator.h

src/kernel/mesh/dolfin/MeshRefinement.h

src/kernel/mesh/dolfin/TetMeshRefinement.h

src/kernel/mesh/dolfin/TriMeshRefinement.h

src/kernel/mesh/dolfin/VertexIterator.h

src/kernel/ode/ParticleSystem.cpp

src/kernel/ode/dolfin/ParticleSystem.h

src/post

src/post/Makefile.am

src/post/Makefile.in

src/post/links.sh

src/post/post.sh

src/pre

src/pre/Makefile.am

src/pre/Makefile.in

src/pydolfin/SettingsGlue.cpp

src/pydolfin/SettingsGlue.h

src/pydolfin/dolfin.py

src/pydolfin/dolfin_wrap.cpp

src/pydolfin/dolfin_wrap.h

src/test/L2Norm.form

src/test/L2Norm.h

src/test/Makefile

src/test/dolfin-1.xml.gz

src/test/function.xml

src/test/main.cpp

src/test/reftri.xml.gz

files modified:
.hgignore

AUTHORS

ChangeLog

Makefile.am

Makefile.in

README

TODO

aclocal.m4

configure

configure.ac

data/meshes/cylinder.xml.gz

data/meshes/dolfin-1.xml.gz

data/meshes/dolfin-2.xml.gz

data/meshes/gear.xml.gz

data/meshes/slit.xml.gz

data/meshes/tetmesh-1.xml.gz

data/meshes/tetmesh-16.xml.gz

data/meshes/tetmesh-4.xml.gz

data/meshes/tetmesh-8.xml.gz

data/meshes/tetmesh_24_8_8.xml.gz

data/meshes/tetmesh_LES_10_2_7.xml.gz

data/meshes/tetmesh_backward_facing_step_32_8_8.xml.gz

data/meshes/tetmesh_bluff_body_32_8_8.xml.gz

data/meshes/tetrahedron.xml.gz

data/meshes/triangle.xml.gz

data/meshes/trimesh-1.xml.gz

data/meshes/trimesh-128.xml.gz

data/meshes/trimesh-16.xml.gz

data/meshes/trimesh-2.xml.gz

data/meshes/trimesh-32.xml.gz

data/meshes/trimesh-4.xml.gz

data/meshes/trimesh-64.xml.gz

data/meshes/trimesh-8.xml.gz

data/meshes/two_particles.xml.gz

doc/manual/bibliography.bib

doc/manual/chapters/about.tex

doc/manual/chapters/contributing-dolfin.tex

doc/manual/chapters/contributing.tex

doc/manual/chapters/functions.tex

doc/manual/chapters/installation-downloading.tex

doc/manual/chapters/installation.tex

doc/manual/chapters/io.tex

doc/manual/chapters/linearalgebra.tex

doc/manual/chapters/logsystem.tex

doc/manual/chapters/mesh.tex

doc/manual/chapters/nonlinearsolver.tex

doc/manual/chapters/ode.tex

doc/manual/chapters/parameters.tex

doc/manual/chapters/pde.tex

doc/manual/chapters/quickstart.tex

doc/manual/chapters/referenceelements.tex

doc/manual/chapters/solvers.tex

doc/manual/dolfin-user-manual.pdf

doc/manual/dolfin-user-manual.tex

doc/manual/eps/poisson.eps

doc/manual/fenicsmanual.cls

doc/progr_reference/html/Doxyfile

doc/progr_reference/html/myfooter.inc

doc/progr_reference/html/myheader.inc

m4/ac_python_devel.m4

scripts/compileforms

scripts/makedist

src/Makefile.am

src/Makefile.in

src/demo/Makefile.am

src/demo/Makefile.in

src/demo/fem/Makefile.am

src/demo/fem/Makefile.in

src/demo/fem/simple/Makefile

src/demo/fem/simple/main.cpp

src/demo/fem/simple/tetrahedron.xml.gz

src/demo/mesh/Makefile

src/demo/mesh/main.cpp

src/demo/mesh/mesh2D.xml.gz

src/demo/mesh/mesh3D.xml.gz

src/demo/nls/Makefile.am

src/demo/nls/Makefile.in

src/demo/nls/nonlinearpoisson/Makefile

src/demo/nls/nonlinearpoisson/NonlinearPoisson.form

src/demo/nls/nonlinearpoisson/NonlinearPoisson.h

src/demo/nls/nonlinearpoisson/main.cpp

src/demo/ode/Makefile.am

src/demo/ode/Makefile.in

src/demo/ode/complex/Makefile

src/demo/ode/complex/main.cpp

src/demo/ode/homotopy/Makefile.in

src/demo/ode/homotopy/economy/Makefile

src/demo/ode/homotopy/economy/ces.cpp

src/demo/ode/homotopy/economy/test.cpp

src/demo/ode/homotopy/simple/Makefile

src/demo/ode/homotopy/simple/main.cpp

src/demo/ode/lorenz/Makefile

src/demo/ode/lorenz/main.cpp

src/demo/ode/method-weights/Makefile

src/demo/ode/stiff/Makefile

src/demo/ode/stiff/TestProblem1.h

src/demo/ode/stiff/TestProblem2.h

src/demo/ode/stiff/TestProblem3.h

src/demo/ode/stiff/TestProblem4.h

src/demo/ode/stiff/TestProblem5.h

src/demo/ode/stiff/TestProblem6.h

src/demo/ode/stiff/TestProblem7.h

src/demo/ode/stiff/TestProblem8.h

src/demo/ode/stiff/TestProblem9.h

src/demo/ode/stiff/main.cpp

src/demo/ode/stiff/run-tests.sh

src/demo/pde/Makefile.am

src/demo/pde/Makefile.in

src/demo/pde/convection-diffusion/ConvectionDiffusion.form

src/demo/pde/convection-diffusion/ConvectionDiffusion.h

src/demo/pde/convection-diffusion/Makefile

src/demo/pde/convection-diffusion/Stokes.form

src/demo/pde/convection-diffusion/Stokes.h

src/demo/pde/convection-diffusion/main.cpp

src/demo/pde/elasticity/Elasticity.form

src/demo/pde/elasticity/Elasticity.h

src/demo/pde/elasticity/ElasticityStrain.form

src/demo/pde/elasticity/ElasticityStrain.h

src/demo/pde/elasticity/Makefile

src/demo/pde/elasticity/main.cpp

src/demo/pde/nonlinear/Makefile.in

src/demo/pde/nonlinear/nonlinear-poisson/Makefile

src/demo/pde/nonlinear/nonlinear-poisson/NonlinearPoisson.form

src/demo/pde/nonlinear/nonlinear-poisson/NonlinearPoisson.h

src/demo/pde/nonlinear/nonlinear-poisson/main.cpp

src/demo/pde/poisson/Makefile

src/demo/pde/poisson/Poisson.form

src/demo/pde/poisson/Poisson.h

src/demo/pde/poisson/README

src/demo/pde/poisson/main.cpp

src/demo/pde/stokes/Makefile.in

src/demo/pde/stokes/stabilized/Makefile

src/demo/pde/stokes/stabilized/Stokes.form

src/demo/pde/stokes/stabilized/Stokes.h

src/demo/pde/stokes/stabilized/main.cpp

src/demo/pde/stokes/taylor-hood/Makefile

src/demo/pde/stokes/taylor-hood/Stokes.form

src/demo/pde/stokes/taylor-hood/Stokes.h

src/demo/pde/stokes/taylor-hood/main.cpp

src/demo/quadrature/Makefile

src/demo/scripting/Makefile.in

src/demo/scripting/pydolfin/cow05b.xml.gz

src/demo/scripting/pydolfin/cow05c.xml.gz

src/demo/scripting/pydolfin/lademo.py

src/demo/scripting/pydolfin/meshdemo.py

src/demo/scripting/pydolfin/odedemo-harmonic.py

src/demo/scripting/pydolfin/odedemo.py

src/demo/scripting/pydolfin/settingsdemo.py

src/demo/scripting/pydolfin/solvers/poisson/poissonsolver.py

src/demo/scripting/pydolfin/solvers/stokes/L2Error.form

src/demo/scripting/pydolfin/solvers/stokes/Stokes2D.form

src/demo/scripting/pydolfin/solvers/stokes/stokessolver.py

src/demo/solvers/Makefile.am

src/demo/solvers/Makefile.in

src/demo/solvers/convdiff/Makefile

src/demo/solvers/convdiff/dolfin.xml.gz

src/demo/solvers/convdiff/main.cpp

src/demo/solvers/elasticity-updated/Makefile

src/demo/solvers/elasticity-updated/cow05.xml.gz

src/demo/solvers/elasticity-updated/cow06.xml.gz

src/demo/solvers/elasticity-updated/cow07.xml.gz

src/demo/solvers/elasticity-updated/main.cpp

src/demo/solvers/elasticity-updated/roterror01.xml.gz

src/demo/solvers/elasticity/Makefile

src/demo/solvers/elasticity/main.cpp

src/demo/solvers/elasticity/tetmesh-4.xml.gz

src/demo/solvers/elasticity/tetmesh-8.xml.gz

src/demo/solvers/heat/Makefile

src/demo/solvers/heat/main.cpp

src/demo/solvers/navierstokes/Makefile.in

src/demo/solvers/navierstokes/benchmark/Makefile

src/demo/solvers/navierstokes/benchmark/README

src/demo/solvers/navierstokes/benchmark/cylinder_2d_bmk.xml.gz

src/demo/solvers/navierstokes/benchmark/cylinder_3d_bmk.xml.gz

src/demo/solvers/navierstokes/benchmark/main.cpp

src/demo/solvers/poisson/Makefile

src/demo/solvers/poisson/main.cpp

src/demo/solvers/stokes/Makefile

src/demo/solvers/stokes/main.cpp

src/greeting/Makefile.in

src/kernel/Makefile.am

src/kernel/Makefile.in

src/kernel/common/Makefile.am

src/kernel/common/Makefile.in

src/kernel/common/Variable.cpp

src/kernel/common/dolfin/Array.h

src/kernel/common/dolfin/Makefile.am

src/kernel/common/dolfin/Makefile.in

src/kernel/common/dolfin/Variable.h

src/kernel/common/dolfin/dolfin_common.h

src/kernel/fem/AffineMap.cpp

src/kernel/fem/BoundaryValue.cpp

src/kernel/fem/FEM.cpp

src/kernel/fem/FiniteElement.cpp

src/kernel/fem/FiniteElementSpec.cpp

src/kernel/fem/Makefile.am

src/kernel/fem/Makefile.in

src/kernel/fem/dolfin/AffineMap.h

src/kernel/fem/dolfin/BoundaryValue.h

src/kernel/fem/dolfin/FEM.h

src/kernel/fem/dolfin/FiniteElement.h

src/kernel/fem/dolfin/Makefile.am

src/kernel/fem/dolfin/Makefile.in

src/kernel/fem/dolfin/P1tet.h

src/kernel/fem/dolfin/P1tri.h

src/kernel/fem/dolfin/P2tet.h

src/kernel/fem/dolfin/P2tri.h

src/kernel/fem/dolfin/P3tet.h

src/kernel/fem/dolfin/P3tri.h

src/kernel/fem/dolfin/P4tet.h

src/kernel/fem/dolfin/P4tri.h

src/kernel/fem/dolfin/P5tet.h

src/kernel/fem/dolfin/P5tri.h

src/kernel/fem/dolfin/dolfin_fem.h

src/kernel/form/BilinearForm.cpp

src/kernel/form/Form.cpp

src/kernel/form/Functional.cpp

src/kernel/form/LinearForm.cpp

src/kernel/form/Makefile.in

src/kernel/form/dolfin/BilinearForm.h

src/kernel/form/dolfin/Form.h

src/kernel/form/dolfin/Functional.h

src/kernel/form/dolfin/LinearForm.h

src/kernel/form/dolfin/Makefile.in

src/kernel/form/dolfin/dolfin_form.h

src/kernel/function/ConstantFunction.cpp

src/kernel/function/DiscreteFunction.cpp

src/kernel/function/Function.cpp

src/kernel/function/FunctionPointerFunction.cpp

src/kernel/function/GenericFunction.cpp

src/kernel/function/LocalFunctionData.cpp

src/kernel/function/Makefile.in

src/kernel/function/UserFunction.cpp

src/kernel/function/dolfin/ConstantFunction.h

src/kernel/function/dolfin/DiscreteFunction.h

src/kernel/function/dolfin/Function.h

src/kernel/function/dolfin/FunctionPointerFunction.h

src/kernel/function/dolfin/GenericFunction.h

src/kernel/function/dolfin/LocalFunctionData.h

src/kernel/function/dolfin/Makefile.in

src/kernel/function/dolfin/SpecialFunctions.h

src/kernel/function/dolfin/UserFunction.h

src/kernel/io/File.cpp

src/kernel/io/GenericFile.cpp

src/kernel/io/GiDFile.cpp

src/kernel/io/MFile.cpp

src/kernel/io/MTXFile.cpp

src/kernel/io/Makefile.am

src/kernel/io/Makefile.in

src/kernel/io/MatlabFile.cpp

src/kernel/io/OctaveFile.cpp

src/kernel/io/OpenDXFile.cpp

src/kernel/io/PythonFile.cpp

src/kernel/io/TecplotFile.cpp

src/kernel/io/VTKFile.cpp

src/kernel/io/XMLBLASFormData.cpp

src/kernel/io/XMLFile.cpp

src/kernel/io/XMLFiniteElementSpec.cpp

src/kernel/io/XMLFunction.cpp

src/kernel/io/XMLMatrix.cpp

src/kernel/io/XMLMesh.cpp

src/kernel/io/XMLObject.cpp

src/kernel/io/XMLParameterList.cpp

src/kernel/io/XMLVector.cpp

src/kernel/io/dolfin/File.h

src/kernel/io/dolfin/GenericFile.h

src/kernel/io/dolfin/MFile.h

src/kernel/io/dolfin/MTXFile.h

src/kernel/io/dolfin/Makefile.am

src/kernel/io/dolfin/Makefile.in

src/kernel/io/dolfin/MatlabFile.h

src/kernel/io/dolfin/OctaveFile.h

src/kernel/io/dolfin/VTKFile.h

src/kernel/io/dolfin/XMLBLASFormData.h

src/kernel/io/dolfin/XMLFile.h

src/kernel/io/dolfin/XMLFiniteElementSpec.h

src/kernel/io/dolfin/XMLFunction.h

src/kernel/io/dolfin/XMLMatrix.h

src/kernel/io/dolfin/XMLMesh.h

src/kernel/io/dolfin/XMLObject.h

src/kernel/io/dolfin/XMLParameterList.h

src/kernel/io/dolfin/XMLVector.h

src/kernel/la/GMRES.cpp

src/kernel/la/LU.cpp

src/kernel/la/Makefile.am

src/kernel/la/Makefile.in

src/kernel/la/PETScManager.cpp

src/kernel/la/dolfin/GMRES.h

src/kernel/la/dolfin/KrylovSolver.h

src/kernel/la/dolfin/LU.h

src/kernel/la/dolfin/LinearSolver.h

src/kernel/la/dolfin/Makefile.am

src/kernel/la/dolfin/Makefile.in

src/kernel/la/dolfin/Matrix.h

src/kernel/la/dolfin/PETScManager.h

src/kernel/la/dolfin/Preconditioner.h

src/kernel/la/dolfin/Vector.h

src/kernel/la/dolfin/dolfin_la.h

src/kernel/log/CursesLogger.cpp

src/kernel/log/LogStream.cpp

src/kernel/log/Logger.cpp

src/kernel/log/Makefile.in

src/kernel/log/Progress.cpp

src/kernel/log/dolfin/CursesLogger.h

src/kernel/log/dolfin/Makefile.in

src/kernel/main/Makefile.in

src/kernel/main/dolfin.h

src/kernel/main/dolfin/Makefile.in

src/kernel/main/dolfin_doc.h

src/kernel/main/init.cpp

src/kernel/math/Lagrange.cpp

src/kernel/math/Makefile.in

src/kernel/math/basic.cpp

src/kernel/math/dolfin/Makefile.in

src/kernel/math/dolfin/basic.h

src/kernel/mesh/Cell.cpp

src/kernel/mesh/Edge.cpp

src/kernel/mesh/Face.cpp

src/kernel/mesh/Makefile.am

src/kernel/mesh/Makefile.in

src/kernel/mesh/Mesh.cpp

src/kernel/mesh/MeshData.cpp

src/kernel/mesh/MeshHierarchy.cpp

src/kernel/mesh/Point.cpp

src/kernel/mesh/Tetrahedron.cpp

src/kernel/mesh/Triangle.cpp

src/kernel/mesh/UnitCube.cpp

src/kernel/mesh/UnitSquare.cpp

src/kernel/mesh/Vertex.cpp

src/kernel/mesh/dolfin/Cell.h

src/kernel/mesh/dolfin/Edge.h

src/kernel/mesh/dolfin/Face.h

src/kernel/mesh/dolfin/Makefile.am

src/kernel/mesh/dolfin/Makefile.in

src/kernel/mesh/dolfin/Mesh.h

src/kernel/mesh/dolfin/MeshData.h

src/kernel/mesh/dolfin/MeshHierarchy.h

src/kernel/mesh/dolfin/Point.h

src/kernel/mesh/dolfin/Tetrahedron.h

src/kernel/mesh/dolfin/Triangle.h

src/kernel/mesh/dolfin/UnitCube.h

src/kernel/mesh/dolfin/UnitSquare.h

src/kernel/mesh/dolfin/Vertex.h

src/kernel/mesh/dolfin/dolfin_mesh.h

src/kernel/nls/Makefile.in

src/kernel/nls/NewtonSolver.cpp

src/kernel/nls/NonlinearProblem.cpp

src/kernel/nls/dolfin/Makefile.in

src/kernel/nls/dolfin/NewtonSolver.h

src/kernel/nls/dolfin/NonlinearProblem.h

src/kernel/ode/Adaptivity.cpp

src/kernel/ode/ComplexODE.cpp

src/kernel/ode/Dependencies.cpp

src/kernel/ode/Homotopy.cpp

src/kernel/ode/HomotopyJacobian.cpp

src/kernel/ode/HomotopyODE.cpp

src/kernel/ode/Makefile.am

src/kernel/ode/Makefile.in

src/kernel/ode/Method.cpp

src/kernel/ode/MonoAdaptiveFixedPointSolver.cpp

src/kernel/ode/MonoAdaptiveJacobian.cpp

src/kernel/ode/MonoAdaptiveNewtonSolver.cpp

src/kernel/ode/MonoAdaptiveTimeSlab.cpp

src/kernel/ode/MonoAdaptivity.cpp

src/kernel/ode/MultiAdaptiveFixedPointSolver.cpp

src/kernel/ode/MultiAdaptiveJacobian.cpp

src/kernel/ode/MultiAdaptiveNewtonSolver.cpp

src/kernel/ode/MultiAdaptivePreconditioner.cpp

src/kernel/ode/MultiAdaptiveTimeSlab.cpp

src/kernel/ode/MultiAdaptivity.cpp

src/kernel/ode/ODE.cpp

src/kernel/ode/ODESolver.cpp

src/kernel/ode/Partition.cpp

src/kernel/ode/ReducedModel.cpp

src/kernel/ode/TimeSlab.cpp

src/kernel/ode/TimeSlabJacobian.cpp

src/kernel/ode/TimeSlabSolver.cpp

src/kernel/ode/TimeStepper.cpp

src/kernel/ode/UpdatedMultiAdaptiveJacobian.cpp

src/kernel/ode/cGqMethod.cpp

src/kernel/ode/dGqMethod.cpp

src/kernel/ode/dolfin/ComplexODE.h

src/kernel/ode/dolfin/Dependencies.h

src/kernel/ode/dolfin/Homotopy.h

src/kernel/ode/dolfin/HomotopyJacobian.h

src/kernel/ode/dolfin/HomotopyODE.h

src/kernel/ode/dolfin/Makefile.am

src/kernel/ode/dolfin/Makefile.in

src/kernel/ode/dolfin/Method.h

src/kernel/ode/dolfin/MonoAdaptiveFixedPointSolver.h

src/kernel/ode/dolfin/MonoAdaptiveJacobian.h

src/kernel/ode/dolfin/MonoAdaptiveNewtonSolver.h

src/kernel/ode/dolfin/MonoAdaptiveTimeSlab.h

src/kernel/ode/dolfin/MultiAdaptiveFixedPointSolver.h

src/kernel/ode/dolfin/MultiAdaptiveJacobian.h

src/kernel/ode/dolfin/MultiAdaptiveNewtonSolver.h

src/kernel/ode/dolfin/MultiAdaptivePreconditioner.h

src/kernel/ode/dolfin/MultiAdaptiveTimeSlab.h

src/kernel/ode/dolfin/MultiAdaptivity.h

src/kernel/ode/dolfin/ODE.h

src/kernel/ode/dolfin/ReducedModel.h

src/kernel/ode/dolfin/TimeSlab.h

src/kernel/ode/dolfin/TimeSlabJacobian.h

src/kernel/ode/dolfin/TimeSlabSolver.h

src/kernel/ode/dolfin/UpdatedMultiAdaptiveJacobian.h

src/kernel/ode/dolfin/cGqMethod.h

src/kernel/ode/dolfin/dGqMethod.h

src/kernel/ode/dolfin/dolfin_ode.h

src/kernel/parameter/Makefile.in

src/kernel/parameter/ParameterSystem.cpp

src/kernel/parameter/Parametrized.cpp

src/kernel/parameter/dolfin/DefaultParameters.h

src/kernel/parameter/dolfin/Makefile.in

src/kernel/parameter/dolfin/Parameter.h

src/kernel/parameter/dolfin/Parametrized.h

src/kernel/pde/LinearPDE.cpp

src/kernel/pde/Makefile.am

src/kernel/pde/Makefile.in

src/kernel/pde/NonlinearPDE.cpp

src/kernel/pde/PDE.cpp

src/kernel/pde/dolfin/GenericPDE.h

src/kernel/pde/dolfin/LinearPDE.h

src/kernel/pde/dolfin/Makefile.in

src/kernel/pde/dolfin/NonlinearPDE.h

src/kernel/pde/dolfin/PDE.h

src/kernel/pde/dolfin/dolfin_pde.h

src/kernel/quadrature/GaussQuadrature.cpp

src/kernel/quadrature/GaussianQuadrature.cpp

src/kernel/quadrature/LobattoQuadrature.cpp

src/kernel/quadrature/Makefile.in

src/kernel/quadrature/Quadrature.cpp

src/kernel/quadrature/RadauQuadrature.cpp

src/kernel/quadrature/dolfin/GaussianQuadrature.h

src/kernel/quadrature/dolfin/Makefile.in

src/kernel/quadrature/dolfin/Quadrature.h

src/lib/Makefile.in

src/modules/Makefile.am

src/modules/Makefile.in

src/modules/convdiff/ConvectionDiffusionSolver.cpp

src/modules/convdiff/Makefile.in

src/modules/convdiff/dolfin/ConvectionDiffusion2D.form

src/modules/convdiff/dolfin/ConvectionDiffusion2D.h

src/modules/convdiff/dolfin/ConvectionDiffusion3D.form

src/modules/convdiff/dolfin/ConvectionDiffusion3D.h

src/modules/convdiff/dolfin/ConvectionDiffusionSolver.h

src/modules/convdiff/dolfin/Makefile.in

src/modules/dolfin/Makefile.in

src/modules/dolfin/Solver.h

src/modules/dolfin/dolfin_modules.h

src/modules/elasticity-updated/ElasticityUpdatedSolver.cpp

src/modules/elasticity-updated/Makefile.in

src/modules/elasticity-updated/dolfin/ElasticityUpdated.form

src/modules/elasticity-updated/dolfin/ElasticityUpdated.h

src/modules/elasticity-updated/dolfin/ElasticityUpdatedMass.form

src/modules/elasticity-updated/dolfin/ElasticityUpdatedMass.h

src/modules/elasticity-updated/dolfin/ElasticityUpdatedSigma.form

src/modules/elasticity-updated/dolfin/ElasticityUpdatedSigma.h

src/modules/elasticity-updated/dolfin/ElasticityUpdatedSolver.h

src/modules/elasticity-updated/dolfin/Makefile.in

src/modules/elasticity/ElasticitySolver.cpp

src/modules/elasticity/Makefile.in

src/modules/elasticity/dolfin/Elasticity-alternative.form

src/modules/elasticity/dolfin/Elasticity.form

src/modules/elasticity/dolfin/Elasticity.h

src/modules/elasticity/dolfin/ElasticityMass.form

src/modules/elasticity/dolfin/ElasticityMass.h

src/modules/elasticity/dolfin/ElasticitySolver.h

src/modules/elasticity/dolfin/Makefile.in

src/modules/heat/HeatSolver.cpp

src/modules/heat/Makefile.in

src/modules/heat/dolfin/Heat.form

src/modules/heat/dolfin/Heat.h

src/modules/heat/dolfin/HeatSolver.h

src/modules/heat/dolfin/Makefile.in

src/modules/navierstokes/Makefile.in

src/modules/navierstokes/NSESolver.cpp

src/modules/navierstokes/dolfin/Makefile.in

src/modules/navierstokes/dolfin/NSEContinuity2D.form

src/modules/navierstokes/dolfin/NSEContinuity2D.h

src/modules/navierstokes/dolfin/NSEContinuity3D.form

src/modules/navierstokes/dolfin/NSEContinuity3D.h

src/modules/navierstokes/dolfin/NSEMomentum2D.form

src/modules/navierstokes/dolfin/NSEMomentum2D.h

src/modules/navierstokes/dolfin/NSEMomentum3D.form

src/modules/navierstokes/dolfin/NSEMomentum3D.h

src/modules/navierstokes/dolfin/NSESolver.h

src/modules/poisson/Makefile.in

src/modules/poisson/PoissonSolver.cpp

src/modules/poisson/dolfin/Makefile.in

src/modules/poisson/dolfin/Poisson2D.form

src/modules/poisson/dolfin/Poisson2D.h

src/modules/poisson/dolfin/Poisson3D.form

src/modules/poisson/dolfin/Poisson3D.h

src/modules/poisson/dolfin/PoissonSolver.h

src/modules/stokes/Makefile.in

src/modules/stokes/StokesSolver.cpp

src/modules/stokes/dolfin/L2Error.form

src/modules/stokes/dolfin/L2Error.h

src/modules/stokes/dolfin/Makefile.in

src/modules/stokes/dolfin/Stokes2D.form

src/modules/stokes/dolfin/Stokes2D.h

src/modules/stokes/dolfin/Stokes3D.form

src/modules/stokes/dolfin/Stokes3D.h

src/modules/stokes/dolfin/StokesSolver.h

src/pydolfin/Makefile.am

src/pydolfin/Makefile.in

src/pydolfin/README

src/pydolfin/__init__.py

src/pydolfin/dolfin.i

src/pydolfin/import_form.py

src/utils/Makefile.am

src/utils/Makefile.in

src/utils/convert/Makefile.in

src/utils/convert/dolfin-convert

src/utils/inp2dx/Makefile.in

Show diffs side-by-side

added added

removed removed

src/bench/ode/reaction/README

This directory contains three sets of benchmarks:

bench.py - simple benchmark

bench-tol.py - set of benchmarks for varying tolerance

bench-domain.py - set of benchmarks for varying size of domain

Results can be found in the corresponding log files:

bench.log

bench-tol.py

bench-domain.py

Reference solutions are correct to within a tolerance of 1e-13.

Obtained with DOLFIN 0.6.1+ (1861:e059a2aac502, Wed Apr 12 23:08:37 2006 -0500).

Computed with mono-adaptive cG(3) and fixed time step k = 0.00001.

The following commands were used to obtain the reference solutions:

dolfin-ode-reaction cg fixed-point 0.1 0.1 1000 5.0 parameters-reference.xml

dolfin-ode-reaction cg fixed-point 0.1 0.1 2000 10.0 parameters-reference.xml

dolfin-ode-reaction cg fixed-point 0.1 0.1 4000 20.0 parameters-reference.xml

dolfin-ode-reaction cg fixed-point 0.1 0.1 8000 40.0 parameters-reference.xml

dolfin-ode-reaction cg fixed-point 0.1 0.1 16000 80.0 parameters-reference.xml

Older »