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- Committer: Bazaar Package Importer
- Date: 2004-04-18 14:24:11 UTC
- mfrom: (1.2.1 upstream) (2.1.1 warty)
- Revision ID: james.westby@ubuntu.com-20040418142411-gr92uexquw4w8liq
* New upstream release
* Examples and working code are installed by default to usr/bin,
this has been moved to usr/share/doc/bioperl/bin
* Examples and working code are installed by default to usr/bin,
this has been moved to usr/share/doc/bioperl/bin
- files added:
- Bio/Align/DNAStatistics.pm
- Bio/Assembly
- Bio/Assembly/IO
- Bio/Cluster
- Bio/ClusterIO
- Bio/CodonUsage
- Bio/Coordinate
- Bio/Coordinate/Result
- Bio/DB/Query
- Bio/DB/Taxonomy
- Bio/Das
- Bio/Expression
- Bio/Expression/FeatureGroup
- Bio/Expression/FeatureSet
- Bio/Graphics/FeatureFile
- Bio/Matrix
- Bio/Matrix/IO
- Bio/Matrix/PSM
- Bio/Matrix/PSM/IO
- Bio/Ontology
- Bio/OntologyIO
- Bio/OntologyIO/Handlers
- Bio/Phenotype
- Bio/Phenotype/MeSH
- Bio/Phenotype/OMIM
- Bio/PopGen
- Bio/PopGen/IO
- Bio/PopGen/Simulation
- Bio/Restriction
- Bio/Restriction/Enzyme
- Bio/Restriction/IO
- Bio/Search/Iteration
- Bio/Seq/Meta
- Bio/SeqFeature/SiRNA
- Bio/SeqFeature/Tools
- Bio/Taxonomy
- Bio/Tools/Analysis
- Bio/Tools/Analysis/DNA
- Bio/Tools/Analysis/Protein
- Bio/Tools/EMBOSS
- Bio/Tools/Phylo
- Bio/Tools/Phylo/Molphy
- Bio/Tools/Phylo/PAML
- Bio/Tools/Phylo/Phylip
- Bio/Tools/Primer
- Bio/Tools/Primer/Assessor
- doc
- doc/faq
- doc/howto
- doc/howto/examples
- doc/howto/examples/graphics
- doc/howto/figs
- doc/howto/figs/graphics
- doc/howto/html
- doc/howto/html/images
- doc/howto/pdf
- doc/howto/sgml
- doc/howto/txt
- examples/Bio-DB-GFF
- examples/align
- examples/biblio
- examples/biographics
- examples/cluster
- examples/contributed
- examples/db
- examples/liveseq
- examples/popgen
- examples/root
- examples/root/lib
- examples/root/lib/Bio
- examples/sirna
- examples/tk
- examples/tools
- examples/tree
- maintenance
- scripts/biblio
- scripts/graphics
- scripts/index
- scripts/popgen
- scripts/searchio
- scripts/seq
- scripts/taxa
- scripts/utilities
- t/data/biographics
- t/data/biographics/t1
- t/data/biographics/t2
- t/data/biographics/t3
- t/data/registry
- t/data/registry/bdb
- t/data/registry/flat
- files removed:
- Bio/Annotation.pm
- Bio/Tools/Run/Alignment
- Bio/Tools/StateMachine
- examples/blast
- examples/blast/out
- examples/blast/out/BioWorkbench
- examples/blast/out/EMBL
- examples/blast/out/NCBI
- examples/blast/out/WUBlast
- examples/blast/seq
- examples/exceptions
- examples/exceptions/Bio
- examples/root_object
- examples/root_object/vector
- examples/searchio/writer
- examples/seq
- examples/structure
- scripts/contributed
- scripts/contributed/expression_analysis
- scripts/structure
- files modified:
- AUTHORS
added
removed
maintenance/README
