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  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2007-09-21 22:52:22 UTC
  • mfrom: (1.2.2 upstream)
  • Revision ID: james.westby@ubuntu.com-20070921225222-tt20m2yy6ycuy2d8
Tags: 1.5.2.102-1
* Developer release.
* Upgraded source package to debhelper 5 and standards-version 3.7.2.
* Added libmodule-build-perl and libtest-harness-perl to
  build-depends-indep.
* Disabled automatic CRAN download.
* Using quilt instead of .diff.gz to manage modifications.
* Updated Recommends list for the binary package.
* Moved the "production-quality" scripts to /usr/bin/.
* New maintainer: Debian-Med packaging team mailing list.
* New uploaders: Charles Plessy and Steffen Moeller.
* Updated Depends, Recommends and Suggests.
* Imported in Debian-Med's SVN repository on Alioth.
* Executing the regression tests during package building.
* Moved the Homepage: field out from the package's description.
* Updated watch file.

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Lines of Context:
t/data/urease.tre.nexus
 
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#NEXUS 
 
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Begin trees;  [Treefile saved Thu Jun 24 10:15:07 2004]
 
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[!
 
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>Data file = /home/jes12/possel/urease/urease.cdna.nex
 
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>Heuristic search settings:
 
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>  Optimality criterion = distance (minimum evolution)
 
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>    Negative branch lengths allowed, but set to zero for tree-score calculation
 
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>    Distance measure = uncorrected ("p")
 
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>  Starting tree(s) obtained via neighbor-joining
 
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>  Branch-swapping algorithm: tree-bisection-reconnection (TBR)
 
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>  Steepest descent option not in effect
 
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>  Initial 'MaxTrees' setting = 100
 
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>  Zero-length branches not collapsed
 
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>  'MulTrees' option in effect
 
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>  Topological constraints not enforced
 
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>  Trees are unrooted
 
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>
 
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>Heuristic search completed
 
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>   Total number of rearrangements tried = 34
 
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>   Score of best tree(s) found = 1.13334
 
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>   Number of trees retained = 1
 
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>   Time used = <1 sec (CPU time = 0.00 sec)
 
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]
 
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        Translate
 
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                1 Anidulans,
 
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                2 CneoA,
 
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                3 Cimmitis,
 
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                4 Mgrisea,
 
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                5 Ncrassa,
 
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                6 Spombe
 
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                ;
 
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tree PAUP_1 = [&U] (((1:0.188380,(4:0.147551,5:0.134318):0.027742):0.012293,3:0.175935):0.012799,2:0.212917,6:0.221404);
 
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End;