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tests/testscript.sss

 

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# testscript.sss

 

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# test script for submit-sequence

 

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set NAME=sstest_$(subjectid)

 

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set DIR=$(wdir)

 

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set PRIORITY=1

 

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# unused flags, here to demonstrate syntax

 

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set flags="-a -b -c"

 

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# touch a file to indicate we were here

 

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x_shellcommand cmd="touch $(wdir)/ssrun.txt"

 

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# extract ref volume

 

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x_shellcommand cmd="vbconv $(infile) ref.nii -x 0"

 

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spm2_realign dir=$(wdir) refvolume=ref.nii outfile=r$(infile)

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