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  • Committer: Package Import Robot
  • Author(s): Andreas Tille
  • Date: 2016-04-08 13:58:39 UTC
  • Revision ID: package-import@ubuntu.com-20160408135839-ilq08z8v8p414qpn
Tags: upstream-2.0.6
Import upstream version 2.0.6

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man/get_characters_list.Rd
 
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% Generated by roxygen2: do not edit by hand
 
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% Please edit documentation in R/deprecated.R
 
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\name{get_characters_list}
 
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\alias{get_characters_list}
 
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\title{Extract the character matrix}
 
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\usage{
 
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get_characters_list(nexml, rownames_as_col = FALSE)
 
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}
 
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\arguments{
 
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\item{nexml}{nexml object (e.g. from read.nexml)}
 
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\item{rownames_as_col}{option to return character matrix rownames
 
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(with taxon ids) as it's own column in the data.frame. Default is FALSE
 
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for compatibility with geiger and similar packages.}
 
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}
 
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\value{
 
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the list of taxa
 
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}
 
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\description{
 
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Extract the character matrix
 
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}
 
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\examples{
 
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comp_analysis <- system.file("examples", "comp_analysis.xml", package="RNeXML")
 
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nex <- nexml_read(comp_analysis)
 
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get_characters_list(nex)
 
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}
 
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