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  • Committer: Bazaar Package Importer
  • Author(s): Matt Hope
  • Date: 2004-04-18 14:24:11 UTC
  • mfrom: (1.2.1 upstream) (2.1.1 warty)
  • Revision ID: james.westby@ubuntu.com-20040418142411-gr92uexquw4w8liq
Tags: 1.4-1
* New upstream release
* Examples and working code are installed by default to usr/bin,
  this has been moved to usr/share/doc/bioperl/bin

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t/data/AY095303S1.gbk
 
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LOCUS       AY095303S1              2375 bp    DNA     linear   PLN 21-JAN-2003
 
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DEFINITION  Chlamydomonas reinhardtii c-type cytochrome synthesis 1 (CCS1)
 
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            gene, ccs1-ac206 allele, 5'UTR and exons 1 through 6.
 
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ACCESSION   AY095303
 
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VERSION     AY095303.1  GI:25986619
 
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KEYWORDS    .
 
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SEGMENT     1 of 2
 
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SOURCE      Chlamydomonas reinhardtii
 
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  ORGANISM  Chlamydomonas reinhardtii
 
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            Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales;
 
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            Chlamydomonadaceae; Chlamydomonas.
 
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REFERENCE   1  (bases 1 to 2375)
 
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  AUTHORS   Dreyfuss,B.W., Hamel,P.P., Nakamoto,S.S. and Merchant,S.
 
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  TITLE     Functional Analysis of a Divergent System II Protein, Ccs1,
 
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            Involved in c-Type Cytochrome Biogenesis
 
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  JOURNAL   J. Biol. Chem. 278 (4), 2604-2613 (2003)
 
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   PUBMED   12427747
 
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REFERENCE   2  (bases 1 to 2375)
 
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  AUTHORS   Dreyfuss,B.W., Hamel,P., Nakamoto,S.S. and Merchant,S.
 
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  TITLE     Direct Submission
 
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  JOURNAL   Submitted (11-APR-2002) Department of Chemistry & Biochemistry,
 
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            University of California, Los Angeles, P.O. Box 951569, 405 Hilgard
 
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            Avenue, Los Angeles, CA 90095-1569, USA
 
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FEATURES             Location/Qualifiers
 
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     source          1..2375
 
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                     /organism="Chlamydomonas reinhardtii"
 
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                     /mol_type="genomic DNA"
 
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                     /strain="ccs1-ac206"
 
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                     /db_xref="taxon:3055"
 
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     gene            order(124..2375,AY095304.1:1..1465)
 
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                     /gene="CCS1"
 
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                     /allele="ccs1-ac206"
 
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     mRNA            join(124..330,512..825,1045..1233,1418..1798,2000..2131,
 
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                     2253..2345,AY095304.1:6..303,AY095304.1:495..677,
 
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                     AY095304.1:863..1465)
 
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                     /gene="CCS1"
 
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                     /product="c-type cytochrome synthesis 1"
 
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     exon            124..330
 
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                     /gene="CCS1"
 
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                     /number=1
 
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     5'UTR           124..206
 
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                     /gene="CCS1"
 
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     CDS             join(207..330,512..825,1045..1233,1418..1798,2000..2131,
 
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                     2253..2345,AY095304.1:6..303,AY095304.1:495..677,
 
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                     AY095304.1:863..1098)
 
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                     /gene="CCS1"
 
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                     /codon_start=1
 
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                     /product="c-type cytochrome synthesis 1"
 
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                     /protein_id="AAM44130.1"
 
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                     /db_xref="GI:25986621"
 
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                     /translation="MQPYASVSGRCLSRPDALHVIPFGRPLQAIAGRRFVRCFAKGGQ
 
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                     PGDKKKLNVTDKLRLGNTPPTLDVLKAPRPTDAPSAIDDAPSTSGLGLGGGVASPRTL
 
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                     VQSNAVQVAWRRLMKELSSLPRAIAIMALIAVLSGLGTFIPQNKSIEYYLVNYPDGAE
 
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                     KVLGFLTGDLILTLQLDHIYTADYFYLSMGLLAASLAACTYTRQWPAVKVAQRWRFLT
 
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                     QPKSLLKQGRTEVLPNARVSDLGAILLQRGYQVRESCACQRTAAALLLRFHSVAADPS
 
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                     PLLSFVLVAQVFVKDGSLYGFKGLAGKLGPIGVHAALLLCLFGTAWSGFGTLKGNVMC
 
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                     PEGQDFQVASFLQPSSPIASMPASASNVIHVNKFTIDYRPDGSVAQFYSDLSLLDPAQ
 
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                     GGKEMMRKTISVNDPFRFNGVTMYQTDWSLSAVTLRVLGQDAPLARAAQAAEAQAAAS
 
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                     TSGPTSSASSTSDALPQQRTAFNLPMASLEGKPGVAGRLWATFLPLAEPGQDGSAPKG
 
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                     ISILARDPQSVVFYDAKGQFVGVRRPGSGKPIEVEGLALVVEDVTGATGLELKSDPGV
 
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                     PAVYAGFGGLMVTTLISYLSHSQVWALQQGSSLFVSGRTNRAKLAFDRELDDILNAVP
 
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                     ELPPTAATTVASSASTAAPAPTAKQ"
 
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     exon            512..825
 
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                     /gene="CCS1"
 
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                     /number=2
 
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     exon            1045..1233
 
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                     /gene="CCS1"
 
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                     /number=3
 
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     exon            1418..1798
 
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                     /gene="CCS1"
 
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                     /number=4
 
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     variation       1648
 
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                     /gene="CCS1"
 
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                     /note="results in readthrough of typical intron 4 and
 
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                     addition of 36 amino acids within stromal loop"
 
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                     /replace="g"
 
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     exon            2000..2131
 
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                     /gene="CCS1"
 
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                     /number=5
 
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     exon            2253..2345
 
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                     /gene="CCS1"
 
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                     /number=6
 
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BASE COUNT      474 a    718 c    697 g    486 t
 
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ORIGIN      
 
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        1 cacatacgac cccaagcagg gccctgcgtg ggtgaaatgc cacacgcggc acgaatccgt
 
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       61 cggccactcc atgaattgcc cacaaggcca caattgagcc tacaaggatg tggaagtgat
 
87
      121 aactacctag ctccactacc agctgcgact gcccagttct cgagctttct ttctgtccgg
 
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      181 ccccgcgctt gcacgcgtgc acaaaaatgc agccatacgc ttccgtgagc gggcgatgtc
 
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      241 tatctagacc agatgcattg catgtgatac cgtttgggcg accgctgcaa gcaattgccg
 
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      301 ggcggcggtt cgttcgctgt tttgcgaaag gtgcgcagcc ggggaaagaa cacacgaatg
 
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      361 ggtgtgcagg caattgatgg tttcactatc aattaattat cagggctggg ttgtacgcac
 
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      421 ttggcagtgg acttgcatgc gtggaagcga tgtcgccacg ctgctattca aatattaagt
 
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      481 tggagcctgc tctgctggac ccaaaacata ggaggacaac ctggtgacaa gaagaagctc
 
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      541 aacgtgacgg acaagctgcg cctcgggaac actcctccca cgctggacgt gcttaaagcg
 
95
      601 ccacggccaa ccgacgctcc ctcagccatc gatgacgccc ccagcacttc gggcctgggg
 
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      661 ctgggcggag gagtggcgag ccccaggact ttggtgcagt ccaatgccgt gcaggtggcg
 
97
      721 tggcgccggc tcatgaagga gctgtcgtcg ctcccacgcg ccatcgccat catggccctc
 
98
      781 atcgccgtgc tgtcgggcct gggcaccttc atcccccaaa acaaggtgcg ggggaatgcg
 
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      841 acacatgaag ttaatgcaat tctgccaacc aagctgaagc acttgcattg gagccgcgcg
 
100
      901 ggatgagcca gcacaccagc tttgacctgc gcgtaccgca accaggcacc tacgccctcc
 
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      961 cgcgcagtgc ctccctttcg gtctctccga ctcttccaac ctgtctgacc ctcatctcca
 
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     1021 ccccccaatg tatccatcca acagtccatc gagtactacc tggtcaacta cccagacggc
 
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     1081 gcggagaagg tgctggggtt cctgactggc gacctcattc tgaccctaca gctggaccac
 
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     1141 atctacaccg ctgactattt ctacctgtcc atggggctgc tggccgcctc cctggctgcc
 
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     1201 tgcacctaca cccgccagtg gcccgccgta aaggtgcgtg cgtaaagggt ttgggagtcg
 
106
     1261 taggaggaag gcagggtaga tggcgggaag gggcggacag agaggaagga ttggggcgta
 
107
     1321 ggttgtggtg acggagaagg cccggttgga gcctgcacgg gggttaggta aaggtgaaag
 
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     1381 gcaggcaaat accgcccact cgtcgtgttc ctgacaggtg gctcagcgct ggcgcttcct
 
109
     1441 gacgcagccg aagtcgctgc ttaagcaggg gcgcacggag gtgttgccca acgcgcgtgt
 
110
     1501 gtccgacctg ggcgctatcc tgctgcagcg gggctaccag gtgagggaga gctgtgcgtg
 
111
     1561 tcagcgtacg gctgctgcat tacttcttag gtttcactcc gtcgctgctg acccttcacc
 
112
     1621 tctgctttcc tttgttcttg tggctcaagt gtttgtgaag gacggctcct tatacggctt
 
113
     1681 caagggcctg gccggcaaac tggggcccat cggcgtgcac gcggcgctgc tgctgtgcct
 
114
     1741 gttcggtacg gcgtggagcg ggttcggcac cctcaagggc aacgtcatgt gcccggaggt
 
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     1801 gagggagcag aggacgcaca tggttgtctg gtggcggcac ggagacacgg tagtgacaag
 
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     1861 ccggctcagg gcagtttggg aaggtggtga tgcaagttgc tggccaggga agtacgctca
 
117
     1921 cccatgttct ccgagtgctt gctatgttcc aacacgatcc cagaaatcgc acgaggacca
 
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     1981 atcaacgttg cgcctgcagg gtcaagactt ccaggtggct tccttcctgc agccgtcctc
 
119
     2041 gccaattgcc agcatgcccg cctccgcctc caacgtcatc cacgtcaaca agttcaccat
 
120
     2101 tgactaccgc ccagatggct cagtggcgca ggtgcgtgcg ctacaggttg gccggaacca
 
121
     2161 tgccacactt tgcaccctca ccattcctgc gatagtgttg gttctcatca gtactgacgt
 
122
     2221 attcatctcc ctccatctgc cctatcccgc agttctactc ggacttgtcg ctgcttgatc
 
123
     2281 ccgcccaggg cggcaaggaa atgatgcgca agaccatcag cgtgaacgac cccttccgct
 
124
     2341 tcaacgtgag aatacaacgc atgacggtac ctgct
 
125
//
 
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