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Viewing changes to src/examples/gff3sort.c

  • Committer: Package Import Robot
  • Author(s): Sascha Steinbiss
  • Date: 2012-07-09 14:10:23 UTC
  • Revision ID: package-import@ubuntu.com-20120709141023-juuu4spm6chqsf9o
Tags: upstream-1.4.1
Import upstream version 1.4.1

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src/examples/gff3sort.c
 
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#include "genometools.h"
 
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int main(int argc, const char *argv[])
 
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{
 
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  GtNodeStream *gff3_in_stream, *sort_stream, *gff3_out_stream;
 
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  GtGenomeNode *gn;
 
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  GtError *err;
 
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  int had_err;
 
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  gt_lib_init();
 
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  err = gt_error_new();
 
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  gff3_in_stream = gt_gff3_in_stream_new_unsorted(argc-1, argv+1);
 
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  sort_stream = gt_sort_stream_new(gff3_in_stream);
 
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  gff3_out_stream = gt_gff3_out_stream_new(sort_stream, NULL);
 
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  while (!(had_err = gt_node_stream_next(gff3_out_stream, &gn, err)) && gn)
 
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    gt_genome_node_delete(gn);
 
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  if (had_err)
 
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    fprintf(stderr, "%s: error: %s\n", argv[0], gt_error_get(err));
 
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  gt_node_stream_delete(gff3_out_stream);
 
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  gt_node_stream_delete(sort_stream);
 
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  gt_node_stream_delete(gff3_in_stream);
 
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  gt_error_delete(err);
 
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  if (had_err)
 
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    return EXIT_FAILURE;
 
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  return EXIT_SUCCESS;
 
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}