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  • Committer: Package Import Robot
  • Author(s): Charles Plessy
  • Date: 2013-09-22 13:39:48 UTC
  • mfrom: (3.1.11 sid)
  • Revision ID: package-import@ubuntu.com-20130922133948-c6z62zegjyp7ztou
Tags: 1.6.922-1
http://bugs.debian.org/722910
* New upstream release.
* Replaces and Breaks grinder (<< 0.5.3-3~) because of overlaping contents.
  Closes: #722910
* Stop Replacing and Breaking bioperl ( << 1.6.9 ): not needed anymore. 

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Bio/SeqIO/interpro.pm
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                  -seq_id => $protein_node->getAttribute('id') ),
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                                        } @locNodes;
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                        foreach my $seqFeature (@seqFeatures){
 
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                                $bioSeq->add_SeqFeature($seqFeature);
 
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                                my $annotation1 = Bio::Annotation::DBLink->new;
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                                $annotation1->database($matchNodes[$match]->getAttribute('dbname'));
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                                $annotation1->primary_id($matchNodes[$match]->getAttribute('id'));
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                                     $seqFeature->annotation->add_Annotation('dblink', $go_annotation);
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                                 }
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                        }
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                        $bioSeq->add_SeqFeature(@seqFeatures);
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                }
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        }
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        my $accession = $protein_node->getAttribute('id');