1
YN00 examples/small_taxon_set.nuc
5
Codon position x base (3x4) table for each sequence.
8
position 1: T:0.18105 C:0.19368 A:0.23579 G:0.38947
9
position 2: T:0.26526 C:0.23158 A:0.30105 G:0.20211
10
position 3: T:0.41895 C:0.15579 A:0.28211 G:0.14316
13
position 1: T:0.18105 C:0.19368 A:0.23789 G:0.38737
14
position 2: T:0.26526 C:0.23158 A:0.30105 G:0.20211
15
position 3: T:0.41895 C:0.15579 A:0.28211 G:0.14316
18
position 1: T:0.18105 C:0.19158 A:0.24000 G:0.38737
19
position 2: T:0.26316 C:0.23158 A:0.30105 G:0.20421
20
position 3: T:0.42105 C:0.15158 A:0.28632 G:0.14105
23
position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
24
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
25
position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
28
position 1: T:0.18105 C:0.19158 A:0.23789 G:0.38947
29
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
30
position 3: T:0.41895 C:0.15789 A:0.28211 G:0.14105
33
position 1: T:0.18105 C:0.19158 A:0.24000 G:0.38737
34
position 2: T:0.26316 C:0.23158 A:0.30105 G:0.20421
35
position 3: T:0.42316 C:0.15158 A:0.28421 G:0.14105
38
position 1: T:0.18105 C:0.19158 A:0.23579 G:0.39158
39
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
40
position 3: T:0.41684 C:0.15579 A:0.28211 G:0.14526
43
position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
44
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
45
position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
48
position 1: T:0.18105 C:0.19368 A:0.23368 G:0.39158
49
position 2: T:0.26526 C:0.22947 A:0.30105 G:0.20421
50
position 3: T:0.41895 C:0.15789 A:0.28632 G:0.13684
53
position 1: T:0.18105 C:0.19275 A:0.23649 G:0.38971
54
position 2: T:0.26480 C:0.23041 A:0.30105 G:0.20374
55
position 3: T:0.41942 C:0.15579 A:0.28421 G:0.14058
57
Codon usage for each species
58
--------------------------------------------------------------------------------------------------------------
59
Phe TTT 14 14 14 14 14 14 | Ser TCT 6 6 6 6 6 6 | Tyr TAT 13 13 13 13 13 13 | Cys TGT 5 5 5 5 5 5
60
TTC 8 8 8 8 8 8 | TCC 4 4 4 4 4 4 | TAC 4 4 4 4 4 4 | TGC 3 3 3 3 3 3
61
Leu TTA 9 9 9 9 9 9 | TCA 1 1 1 1 1 1 | *** TAA 0 0 0 0 0 0 | *** TGA 0 0 0 0 0 0
62
TTG 10 10 10 10 10 10 | TCG 1 1 1 1 1 1 | TAG 0 0 0 0 0 0 | Trp TGG 8 8 8 8 8 8
63
--------------------------------------------------------------------------------------------------------------
64
Leu CTT 9 9 9 9 9 9 | Pro CCT 11 11 12 11 10 12 | His CAT 9 9 9 9 9 9 | Arg CGT 11 11 11 11 11 11
65
CTC 0 0 0 0 0 0 | CCC 6 6 5 6 6 5 | CAC 5 5 5 5 5 5 | CGC 5 5 5 5 5 5
66
CTA 9 9 9 10 9 9 | CCA 3 3 3 3 3 3 | Gln CAA 10 10 9 10 10 9 | CGA 6 6 6 6 6 6
67
CTG 4 4 4 3 4 4 | CCG 2 2 2 2 2 2 | CAG 2 2 2 2 2 2 | CGG 0 0 0 0 0 0
68
--------------------------------------------------------------------------------------------------------------
69
Ile ATT 10 11 10 10 11 10 | Thr ACT 17 17 18 16 17 18 | Asn AAT 9 9 9 9 9 9 | Ser AGT 1 1 2 2 2 2
70
ATC 9 9 7 9 9 8 | ACC 8 8 8 8 8 8 | AAC 6 6 6 6 6 6 | AGC 3 3 3 3 3 3
71
ATA 1 1 4 2 1 3 | ACA 6 6 5 5 5 5 | Lys AAA 18 18 18 18 18 18 | Arg AGA 6 6 6 6 6 6
72
Met ATG 10 10 10 9 10 10 | ACG 1 1 1 1 1 1 | AAG 6 6 6 6 6 6 | AGG 1 1 1 1 1 1
73
--------------------------------------------------------------------------------------------------------------
74
Val GTT 15 14 14 15 14 14 | Ala GCT 24 24 23 24 24 24 | Asp GAT 22 22 22 22 22 22 | Gly GGT 23 23 23 23 23 23
75
GTC 1 1 1 1 1 1 | GCC 5 5 5 5 5 4 | GAC 5 5 6 6 6 6 | GGC 2 2 2 2 2 2
76
GTA 13 13 12 13 13 12 | GCA 15 15 16 16 16 16 | Glu GAA 24 24 25 24 24 25 | GGA 13 13 13 13 13 13
77
GTG 4 4 4 4 4 4 | GCG 0 0 0 0 0 0 | GAG 10 10 9 9 9 9 | GGG 9 9 9 9 9 9
78
--------------------------------------------------------------------------------------------------------------
80
--------------------------------------------------------------------------
81
Phe TTT 14 14 14 | Ser TCT 5 6 6 | Tyr TAT 13 13 13 | Cys TGT 5 5 5
82
TTC 8 8 8 | TCC 5 4 4 | TAC 4 4 4 | TGC 3 3 3
83
Leu TTA 9 9 9 | TCA 1 1 1 | *** TAA 0 0 0 | *** TGA 0 0 0
84
TTG 10 10 10 | TCG 1 1 1 | TAG 0 0 0 | Trp TGG 8 8 8
85
--------------------------------------------------------------------------
86
Leu CTT 9 9 9 | Pro CCT 10 11 11 | His CAT 9 9 9 | Arg CGT 11 11 11
87
CTC 0 0 0 | CCC 6 6 6 | CAC 5 5 5 | CGC 5 5 5
88
CTA 9 10 10 | CCA 3 3 3 | Gln CAA 10 10 10 | CGA 6 6 6
89
CTG 4 3 3 | CCG 2 2 2 | CAG 2 2 2 | CGG 0 0 0
90
--------------------------------------------------------------------------
91
Ile ATT 10 10 10 | Thr ACT 17 16 16 | Asn AAT 9 9 9 | Ser AGT 2 2 2
92
ATC 8 9 9 | ACC 8 8 8 | AAC 6 6 6 | AGC 3 3 3
93
ATA 2 2 2 | ACA 5 5 5 | Lys AAA 18 18 18 | Arg AGA 6 6 6
94
Met ATG 10 9 9 | ACG 1 1 1 | AAG 6 6 6 | AGG 1 1 1
95
--------------------------------------------------------------------------
96
Val GTT 15 15 15 | Ala GCT 24 24 24 | Asp GAT 22 22 22 | Gly GGT 23 23 23
97
GTC 1 1 1 | GCC 5 5 5 | GAC 5 6 6 | GGC 2 2 2
98
GTA 13 13 13 | GCA 15 16 16 | Glu GAA 24 24 24 | GGA 13 13 13
99
GTG 4 4 4 | GCG 1 0 0 | GAG 10 9 9 | GGG 9 9 9
100
--------------------------------------------------------------------------
104
--------------------------------------------------
105
Phe TTT 126 | Ser TCT 53 | Tyr TAT 117 | Cys TGT 45
106
TTC 72 | TCC 37 | TAC 36 | TGC 27
107
Leu TTA 81 | TCA 9 | *** TAA 0 | *** TGA 0
108
TTG 90 | TCG 9 | TAG 0 | Trp TGG 72
109
--------------------------------------------------
110
Leu CTT 81 | Pro CCT 99 | His CAT 81 | Arg CGT 99
111
CTC 0 | CCC 52 | CAC 45 | CGC 45
112
CTA 84 | CCA 27 | Gln CAA 88 | CGA 54
113
CTG 33 | CCG 18 | CAG 18 | CGG 0
114
--------------------------------------------------
115
Ile ATT 92 | Thr ACT 152 | Asn AAT 81 | Ser AGT 16
116
ATC 77 | ACC 72 | AAC 54 | AGC 27
117
ATA 18 | ACA 47 | Lys AAA 162 | Arg AGA 54
118
Met ATG 87 | ACG 9 | AAG 54 | AGG 9
119
--------------------------------------------------
120
Val GTT 131 | Ala GCT 215 | Asp GAT 198 | Gly GGT 207
121
GTC 9 | GCC 44 | GAC 51 | GGC 18
122
GTA 115 | GCA 141 | Glu GAA 218 | GGA 117
123
GTG 36 | GCG 1 | GAG 84 | GGG 81
124
--------------------------------------------------
128
(A) Nei-Gojobori (1986) method
132
Nei & Gojobori 1986. dN/dS (dN, dS)
133
(Note: This matrix is not used in later ML. analysis.
134
Use runmode = -2 for ML pairwise comparison.)
137
Pfre186_DNA2 -1.0000 (0.0009 0.0000)
138
Pgra187_DNA2 1.0623 (0.0093 0.0088) 1.1684 (0.0102 0.0088)
139
Phet26_DNA21 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)
140
Pmex37_DNA21 -1.0000 (0.0046 0.0000)-1.0000 (0.0037 0.0000) 0.9534 (0.0084 0.0088) 0.9555 (0.0028 0.0029)
141
Ptre197_DNA2 1.5965 (0.0093 0.0058) 1.7561 (0.0102 0.0058) 0.0000 (0.0000 0.0088) 0.6357 (0.0056 0.0088) 1.4328 (0.0084 0.0058)
142
WHR1_DNA225 0.7964 (0.0046 0.0058) 0.9557 (0.0056 0.0058) 0.4430 (0.0065 0.0147) 0.3175 (0.0028 0.0088) 0.6354 (0.0037 0.0058) 0.5548 (0.0065 0.0117)
143
YALD273_DNA5 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)-1.0000 (0.0000 0.0000) 0.9555 (0.0028 0.0029) 0.6357 (0.0056 0.0088) 0.3175 (0.0028 0.0088)
144
Pop_trich_ch 1.2775 (0.0037 0.0029) 1.5968 (0.0046 0.0029) 0.4758 (0.0056 0.0117)-1.0000 (0.0000 0.0000) 0.9555 (0.0028 0.0029) 0.6357 (0.0056 0.0088) 0.3175 (0.0028 0.0088)-1.0000 (0.0000 0.0000)
147
(B) Yang & Nielsen (2000) method
149
Yang Z, Nielsen R (2000) Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17:32-43
151
(equal weighting of pathways)
153
seq. seq. S N t kappa omega dN +- SE dS +- SE
155
2 1 337.9 1087.1 0.0021 4.2358 99.0000 0.0009 +- 0.0009 -0.0000 +- 0.0000
156
3 1 335.1 1089.9 0.0276 4.2358 1.0246 0.0092 +- 0.0029 0.0090 +- 0.0052
157
3 2 334.8 1090.2 0.0297 4.2358 1.1268 0.0102 +- 0.0031 0.0090 +- 0.0052
158
4 1 337.9 1087.1 0.0106 4.2358 1.2441 0.0037 +- 0.0018 0.0030 +- 0.0030
159
4 2 337.6 1087.4 0.0127 4.2358 1.5546 0.0046 +- 0.0021 0.0030 +- 0.0030
160
4 3 334.8 1090.2 0.0212 4.2358 0.4581 0.0055 +- 0.0023 0.0121 +- 0.0061
161
5 1 338.1 1086.9 0.0106 4.2358 99.0000 0.0046 +- 0.0021 -0.0000 +- 0.0000
162
5 2 337.8 1087.2 0.0084 4.2358 99.0000 0.0037 +- 0.0018 -0.0000 +- 0.0000
163
5 3 335.0 1090.0 0.0254 4.2358 0.9214 0.0083 +- 0.0028 0.0090 +- 0.0052
164
5 4 337.8 1087.2 0.0084 4.2358 0.9322 0.0028 +- 0.0016 0.0030 +- 0.0030
165
6 1 334.8 1090.2 0.0254 4.2358 1.5397 0.0092 +- 0.0029 0.0060 +- 0.0042
166
6 2 334.5 1090.5 0.0276 4.2358 1.6932 0.0102 +- 0.0031 0.0060 +- 0.0042
167
6 3 331.7 1093.3 0.0064 4.2358 0.0000 -0.0000 +- 0.0000 0.0091 +- 0.0053
168
6 4 334.5 1090.5 0.0190 4.2358 0.6124 0.0055 +- 0.0023 0.0090 +- 0.0052
169
6 5 334.7 1090.3 0.0233 4.2358 1.3847 0.0083 +- 0.0028 0.0060 +- 0.0042
170
7 1 338.8 1086.2 0.0148 4.2358 0.7790 0.0046 +- 0.0021 0.0059 +- 0.0042
171
7 2 338.5 1086.5 0.0169 4.2358 0.9344 0.0055 +- 0.0023 0.0059 +- 0.0042
172
7 3 335.7 1089.3 0.0255 4.2358 0.4278 0.0065 +- 0.0024 0.0151 +- 0.0068
173
7 4 338.5 1086.5 0.0127 4.2358 0.3104 0.0028 +- 0.0016 0.0089 +- 0.0052
174
7 5 338.7 1086.3 0.0127 4.2358 0.6226 0.0037 +- 0.0018 0.0059 +- 0.0042
175
7 6 335.4 1089.6 0.0233 4.2358 0.5368 0.0065 +- 0.0024 0.0120 +- 0.0060
176
8 1 337.9 1087.1 0.0106 4.2358 1.2441 0.0037 +- 0.0018 0.0030 +- 0.0030
177
8 2 337.6 1087.4 0.0127 4.2358 1.5546 0.0046 +- 0.0021 0.0030 +- 0.0030
178
8 3 334.8 1090.2 0.0212 4.2358 0.4581 0.0055 +- 0.0023 0.0121 +- 0.0061
179
8 4 337.6 1087.4 -0.0000 4.2358 99.0000 -0.0000 +- 0.0000 -0.0000 +- 0.0000
180
8 5 337.8 1087.2 0.0084 4.2358 0.9322 0.0028 +- 0.0016 0.0030 +- 0.0030
181
8 6 334.5 1090.5 0.0190 4.2358 0.6124 0.0055 +- 0.0023 0.0090 +- 0.0052
182
8 7 338.5 1086.5 0.0127 4.2358 0.3104 0.0028 +- 0.0016 0.0089 +- 0.0052
183
9 1 337.9 1087.1 0.0106 4.2358 1.2441 0.0037 +- 0.0018 0.0030 +- 0.0030
184
9 2 337.6 1087.4 0.0127 4.2358 1.5546 0.0046 +- 0.0021 0.0030 +- 0.0030
185
9 3 334.8 1090.2 0.0212 4.2358 0.4581 0.0055 +- 0.0023 0.0121 +- 0.0061
186
9 4 337.6 1087.4 -0.0000 4.2358 99.0000 -0.0000 +- 0.0000 -0.0000 +- 0.0000
187
9 5 337.8 1087.2 0.0084 4.2358 0.9322 0.0028 +- 0.0016 0.0030 +- 0.0030
188
9 6 334.5 1090.5 0.0190 4.2358 0.6124 0.0055 +- 0.0023 0.0090 +- 0.0052
189
9 7 338.5 1086.5 0.0127 4.2358 0.3104 0.0028 +- 0.0016 0.0089 +- 0.0052
190
9 8 337.6 1087.4 -0.0000 4.2358 99.0000 -0.0000 +- 0.0000 -0.0000 +- 0.0000
193
(C) LWL85, LPB93 & LWLm methods
195
Li W.-H., C.-I. Wu, Luo (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitutions considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2: 150-174.
196
Li W-H (1993) Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36:96-99
197
Pamilo P, Bianchi NO (1993) Evolution of the Zfx and Zfy genes - rates and interdependence between the genes. Mol. Biol. Evol. 10:271-281
198
Yang Z (2006) Computational Molecular Evolution. Oxford University Press, Oxford. Eqs. 2.12 & 2.13
200
2 (Pfre186_DNA2) vs. 1 (Pdel181_DNA2)
202
L(i): 923.0 268.5 233.5 sum= 1425.0
203
Ns(i): 1.0000 0.0000 0.0000 sum= 1.0000
204
Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
205
A(i): 0.0011 0.0000 0.0000
206
B(i): -0.0000 -0.0000 -0.0000
207
LWL85: dS = 0.0000 dN = 0.0009 w = inf S = 323.0 N = 1102.0
208
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
209
LPB93: dS = 0.0000 dN = 0.0011 w = inf
211
3 (Pgra187_DNA2) vs. 1 (Pdel181_DNA2)
213
L(i): 923.0 269.0 233.0 sum= 1425.0
214
Ns(i): 5.5000 1.5000 1.0000 sum= 8.0000
215
Nv(i): 2.5000 2.5000 0.0000 sum= 5.0000
216
A(i): 0.0060 0.0056 0.0043
217
B(i): 0.0027 0.0094 -0.0000
218
LWL85: dS = 0.0078 dN = 0.0096 w = 1.2280 S = 322.7 N = 1102.3
219
LWL85m: dS = 0.0050 dN = 0.0115 w = 2.2818 S = 502.0 N = 923.0 (rho = 1.000)
220
LPB93: dS = 0.0050 dN = 0.0102 w = 2.0369
222
3 (Pgra187_DNA2) vs. 2 (Pfre186_DNA2)
224
L(i): 923.0 269.5 232.5 sum= 1425.0
225
Ns(i): 6.5000 1.5000 1.0000 sum= 9.0000
226
Nv(i): 2.5000 2.5000 0.0000 sum= 5.0000
227
A(i): 0.0071 0.0056 0.0043
228
B(i): 0.0027 0.0094 -0.0000
229
LWL85: dS = 0.0078 dN = 0.0105 w = 1.3442 S = 322.3 N = 1102.7
230
LWL85m: dS = 0.0050 dN = 0.0126 w = 2.5010 S = 502.0 N = 923.0 (rho = 1.000)
231
LPB93: dS = 0.0050 dN = 0.0113 w = 2.2557
233
4 (Phet26_DNA21) vs. 1 (Pdel181_DNA2)
235
L(i): 922.5 269.0 233.5 sum= 1425.0
236
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
237
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
238
A(i): 0.0016 0.0019 0.0043
239
B(i): 0.0011 0.0037 -0.0000
240
LWL85: dS = 0.0047 dN = 0.0032 w = 0.6832 S = 323.2 N = 1101.8
241
LWL85m: dS = 0.0030 dN = 0.0038 w = 1.2689 S = 502.5 N = 922.5 (rho = 1.000)
242
LPB93: dS = 0.0030 dN = 0.0033 w = 1.1052
244
4 (Phet26_DNA21) vs. 2 (Pfre186_DNA2)
246
L(i): 922.5 269.5 233.0 sum= 1425.0
247
Ns(i): 2.5000 0.5000 1.0000 sum= 4.0000
248
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
249
A(i): 0.0027 0.0019 0.0043
250
B(i): 0.0011 0.0037 -0.0000
251
LWL85: dS = 0.0047 dN = 0.0041 w = 0.8779 S = 322.8 N = 1102.2
252
LWL85m: dS = 0.0030 dN = 0.0049 w = 1.6325 S = 502.5 N = 922.5 (rho = 1.000)
253
LPB93: dS = 0.0030 dN = 0.0044 w = 1.4686
255
4 (Phet26_DNA21) vs. 3 (Pgra187_DNA2)
257
L(i): 922.5 270.0 232.5 sum= 1425.0
258
Ns(i): 4.0000 1.0000 2.0000 sum= 7.0000
259
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
260
A(i): 0.0044 0.0037 0.0087
261
B(i): 0.0016 0.0056 -0.0000
262
LWL85: dS = 0.0094 dN = 0.0064 w = 0.6803 S = 322.5 N = 1102.5
263
LWL85m: dS = 0.0060 dN = 0.0076 w = 1.2668 S = 502.5 N = 922.5 (rho = 1.000)
264
LPB93: dS = 0.0060 dN = 0.0069 w = 1.1440
266
5 (Pmex37_DNA21) vs. 1 (Pdel181_DNA2)
268
L(i): 923.0 269.0 233.0 sum= 1425.0
269
Ns(i): 2.0000 0.0000 0.0000 sum= 2.0000
270
Nv(i): 2.0000 1.0000 0.0000 sum= 3.0000
271
A(i): 0.0022 -0.0000 0.0000
272
B(i): 0.0022 0.0037 -0.0000
273
LWL85: dS = -0.0000 dN = 0.0046 w =-1568.0041 S = 322.7 N = 1102.3
274
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
275
LPB93: dS = -0.0000 dN = 0.0047 w =-2519.1394
277
5 (Pmex37_DNA21) vs. 2 (Pfre186_DNA2)
279
L(i): 923.0 269.5 232.5 sum= 1425.0
280
Ns(i): 1.0000 0.0000 0.0000 sum= 1.0000
281
Nv(i): 2.0000 1.0000 0.0000 sum= 3.0000
282
A(i): 0.0011 -0.0000 0.0000
283
B(i): 0.0022 0.0037 -0.0000
284
LWL85: dS = -0.0000 dN = 0.0036 w =-1254.3509 S = 322.3 N = 1102.7
285
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
286
LPB93: dS = -0.0000 dN = 0.0036 w =-1938.1612
288
5 (Pmex37_DNA21) vs. 3 (Pgra187_DNA2)
290
L(i): 923.0 270.0 232.0 sum= 1425.0
291
Ns(i): 5.5000 1.5000 1.0000 sum= 8.0000
292
Nv(i): 2.5000 1.5000 0.0000 sum= 4.0000
293
A(i): 0.0060 0.0056 0.0043
294
B(i): 0.0027 0.0056 -0.0000
295
LWL85: dS = 0.0078 dN = 0.0087 w = 1.1081 S = 322.0 N = 1103.0
296
LWL85m: dS = 0.0050 dN = 0.0104 w = 2.0644 S = 502.0 N = 923.0 (rho = 1.000)
297
LPB93: dS = 0.0050 dN = 0.0094 w = 1.8682
299
5 (Pmex37_DNA21) vs. 4 (Phet26_DNA21)
301
L(i): 922.5 270.0 232.5 sum= 1425.0
302
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
303
Nv(i): 1.0000 0.0000 0.0000 sum= 1.0000
304
A(i): 0.0016 0.0019 0.0043
305
B(i): 0.0011 -0.0000 -0.0000
306
LWL85: dS = 0.0047 dN = 0.0023 w = 0.4868 S = 322.5 N = 1102.5
307
LWL85m: dS = 0.0030 dN = 0.0027 w = 0.9065 S = 502.5 N = 922.5 (rho = 1.000)
308
LPB93: dS = 0.0030 dN = 0.0025 w = 0.8244
310
6 (Ptre197_DNA2) vs. 1 (Pdel181_DNA2)
312
L(i): 923.0 269.0 233.0 sum= 1425.0
313
Ns(i): 5.5000 0.5000 2.0000 sum= 8.0000
314
Nv(i): 2.5000 1.5000 0.0000 sum= 4.0000
315
A(i): 0.0060 0.0019 0.0087
316
B(i): 0.0027 0.0056 -0.0000
317
LWL85: dS = 0.0078 dN = 0.0087 w = 1.1111 S = 322.7 N = 1102.3
318
LWL85m: dS = 0.0050 dN = 0.0104 w = 2.0645 S = 502.0 N = 923.0 (rho = 1.000)
319
LPB93: dS = 0.0050 dN = 0.0094 w = 1.8688
321
6 (Ptre197_DNA2) vs. 2 (Pfre186_DNA2)
323
L(i): 923.0 269.5 232.5 sum= 1425.0
324
Ns(i): 6.5000 0.5000 2.0000 sum= 9.0000
325
Nv(i): 2.5000 1.5000 0.0000 sum= 4.0000
326
A(i): 0.0071 0.0019 0.0087
327
B(i): 0.0027 0.0056 -0.0000
328
LWL85: dS = 0.0078 dN = 0.0096 w = 1.2275 S = 322.3 N = 1102.7
329
LWL85m: dS = 0.0050 dN = 0.0115 w = 2.2838 S = 502.0 N = 923.0 (rho = 1.000)
330
LPB93: dS = 0.0050 dN = 0.0105 w = 2.0879
332
6 (Ptre197_DNA2) vs. 3 (Pgra187_DNA2)
334
L(i): 923.0 270.0 232.0 sum= 1425.0
335
Ns(i): 0.0000 1.0000 1.0000 sum= 2.0000
336
Nv(i): 0.0000 1.0000 0.0000 sum= 1.0000
337
A(i): 0.0000 0.0037 0.0043
338
B(i): -0.0000 0.0037 -0.0000
339
LWL85: dS = 0.0062 dN = 0.0009 w = 0.1457 S = 322.0 N = 1103.0
340
LWL85m: dS = 0.0040 dN = 0.0011 w = 0.2715 S = 502.0 N = 923.0 (rho = 1.000)
341
LPB93: dS = 0.0040 dN = 0.0008 w = 0.2100
343
6 (Ptre197_DNA2) vs. 4 (Phet26_DNA21)
345
L(i): 922.5 270.0 232.5 sum= 1425.0
346
Ns(i): 4.0000 0.0000 3.0000 sum= 7.0000
347
Nv(i): 1.5000 0.5000 0.0000 sum= 2.0000
348
A(i): 0.0044 -0.0000 0.0131
349
B(i): 0.0016 0.0019 -0.0000
350
LWL85: dS = 0.0094 dN = 0.0055 w = 0.5801 S = 322.5 N = 1102.5
351
LWL85m: dS = 0.0060 dN = 0.0065 w = 1.0802 S = 502.5 N = 922.5 (rho = 1.000)
352
LPB93: dS = 0.0060 dN = 0.0060 w = 0.9989
354
6 (Ptre197_DNA2) vs. 5 (Pmex37_DNA21)
356
L(i): 923.0 270.0 232.0 sum= 1425.0
357
Ns(i): 5.5000 0.5000 2.0000 sum= 8.0000
358
Nv(i): 2.5000 0.5000 0.0000 sum= 3.0000
359
A(i): 0.0060 0.0019 0.0087
360
B(i): 0.0027 0.0019 -0.0000
361
LWL85: dS = 0.0078 dN = 0.0078 w = 0.9913 S = 322.0 N = 1103.0
362
LWL85m: dS = 0.0050 dN = 0.0093 w = 1.8469 S = 502.0 N = 923.0 (rho = 1.000)
363
LPB93: dS = 0.0050 dN = 0.0085 w = 1.6999
365
7 (WHR1_DNA225) vs. 1 (Pdel181_DNA2)
367
L(i): 923.0 268.5 233.5 sum= 1425.0
368
Ns(i): 1.5000 0.5000 2.0000 sum= 4.0000
369
Nv(i): 2.5000 0.5000 0.0000 sum= 3.0000
370
A(i): 0.0016 0.0019 0.0086
371
B(i): 0.0027 0.0019 -0.0000
372
LWL85: dS = 0.0078 dN = 0.0041 w = 0.5251 S = 323.0 N = 1102.0
373
LWL85m: dS = 0.0050 dN = 0.0049 w = 0.9743 S = 502.0 N = 923.0 (rho = 1.000)
374
LPB93: dS = 0.0050 dN = 0.0042 w = 0.8280
376
7 (WHR1_DNA225) vs. 2 (Pfre186_DNA2)
378
L(i): 923.0 269.0 233.0 sum= 1425.0
379
Ns(i): 2.5000 0.5000 2.0000 sum= 5.0000
380
Nv(i): 2.5000 0.5000 0.0000 sum= 3.0000
381
A(i): 0.0027 0.0019 0.0087
382
B(i): 0.0027 0.0019 -0.0000
383
LWL85: dS = 0.0078 dN = 0.0050 w = 0.6414 S = 322.7 N = 1102.3
384
LWL85m: dS = 0.0050 dN = 0.0060 w = 1.1918 S = 502.0 N = 923.0 (rho = 1.000)
385
LPB93: dS = 0.0050 dN = 0.0052 w = 1.0452
387
7 (WHR1_DNA225) vs. 3 (Pgra187_DNA2)
389
L(i): 923.0 269.5 232.5 sum= 1425.0
390
Ns(i): 4.0000 1.0000 3.0000 sum= 8.0000
391
Nv(i): 2.0000 2.0000 0.0000 sum= 4.0000
392
A(i): 0.0044 0.0037 0.0131
393
B(i): 0.0022 0.0075 -0.0000
394
LWL85: dS = 0.0126 dN = 0.0073 w = 0.5811 S = 322.3 N = 1102.7
395
LWL85m: dS = 0.0081 dN = 0.0087 w = 1.0811 S = 502.0 N = 923.0 (rho = 1.000)
396
LPB93: dS = 0.0081 dN = 0.0077 w = 0.9591
398
7 (WHR1_DNA225) vs. 4 (Phet26_DNA21)
400
L(i): 922.5 269.5 233.0 sum= 1425.0
401
Ns(i): 0.0000 0.0000 3.0000 sum= 3.0000
402
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
403
A(i): -0.0000 -0.0000 0.0130
404
B(i): 0.0016 0.0056 -0.0000
405
LWL85: dS = 0.0094 dN = 0.0027 w = 0.2903 S = 322.8 N = 1102.2
406
LWL85m: dS = 0.0060 dN = 0.0033 w = 0.5399 S = 502.5 N = 922.5 (rho = 1.000)
407
LPB93: dS = 0.0060 dN = 0.0025 w = 0.4178
409
7 (WHR1_DNA225) vs. 5 (Pmex37_DNA21)
411
L(i): 923.0 269.5 232.5 sum= 1425.0
412
Ns(i): 1.5000 0.5000 2.0000 sum= 4.0000
413
Nv(i): 0.5000 1.5000 0.0000 sum= 2.0000
414
A(i): 0.0016 0.0019 0.0087
415
B(i): 0.0005 0.0056 -0.0000
416
LWL85: dS = 0.0078 dN = 0.0032 w = 0.4075 S = 322.3 N = 1102.7
417
LWL85m: dS = 0.0050 dN = 0.0038 w = 0.7582 S = 502.0 N = 923.0 (rho = 1.000)
418
LPB93: dS = 0.0050 dN = 0.0033 w = 0.6602
420
7 (WHR1_DNA225) vs. 6 (Ptre197_DNA2)
422
L(i): 923.0 269.5 232.5 sum= 1425.0
423
Ns(i): 4.0000 0.0000 4.0000 sum= 8.0000
424
Nv(i): 2.0000 1.0000 0.0000 sum= 3.0000
425
A(i): 0.0044 -0.0000 0.0175
426
B(i): 0.0022 0.0037 -0.0000
427
LWL85: dS = 0.0126 dN = 0.0064 w = 0.5052 S = 322.3 N = 1102.7
428
LWL85m: dS = 0.0081 dN = 0.0076 w = 0.9400 S = 502.0 N = 923.0 (rho = 1.000)
429
LPB93: dS = 0.0081 dN = 0.0069 w = 0.8491
431
8 (YALD273_DNA5) vs. 1 (Pdel181_DNA2)
433
L(i): 922.5 269.0 233.5 sum= 1425.0
434
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
435
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
436
A(i): 0.0016 0.0019 0.0043
437
B(i): 0.0011 0.0037 -0.0000
438
LWL85: dS = 0.0047 dN = 0.0032 w = 0.6832 S = 323.2 N = 1101.8
439
LWL85m: dS = 0.0030 dN = 0.0038 w = 1.2689 S = 502.5 N = 922.5 (rho = 1.000)
440
LPB93: dS = 0.0030 dN = 0.0033 w = 1.1052
442
8 (YALD273_DNA5) vs. 2 (Pfre186_DNA2)
444
L(i): 922.5 269.5 233.0 sum= 1425.0
445
Ns(i): 2.5000 0.5000 1.0000 sum= 4.0000
446
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
447
A(i): 0.0027 0.0019 0.0043
448
B(i): 0.0011 0.0037 -0.0000
449
LWL85: dS = 0.0047 dN = 0.0041 w = 0.8779 S = 322.8 N = 1102.2
450
LWL85m: dS = 0.0030 dN = 0.0049 w = 1.6325 S = 502.5 N = 922.5 (rho = 1.000)
451
LPB93: dS = 0.0030 dN = 0.0044 w = 1.4686
453
8 (YALD273_DNA5) vs. 3 (Pgra187_DNA2)
455
L(i): 922.5 270.0 232.5 sum= 1425.0
456
Ns(i): 4.0000 1.0000 2.0000 sum= 7.0000
457
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
458
A(i): 0.0044 0.0037 0.0087
459
B(i): 0.0016 0.0056 -0.0000
460
LWL85: dS = 0.0094 dN = 0.0064 w = 0.6803 S = 322.5 N = 1102.5
461
LWL85m: dS = 0.0060 dN = 0.0076 w = 1.2668 S = 502.5 N = 922.5 (rho = 1.000)
462
LPB93: dS = 0.0060 dN = 0.0069 w = 1.1440
464
8 (YALD273_DNA5) vs. 4 (Phet26_DNA21)
466
L(i): 922.0 270.0 233.0 sum= 1425.0
467
Ns(i): 0.0000 0.0000 0.0000 sum= 0.0000
468
Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
469
A(i): 0.0000 0.0000 0.0000
470
B(i): -0.0000 -0.0000 -0.0000
471
LWL85: dS = 0.0000 dN = 0.0000 w = nan S = 323.0 N = 1102.0
472
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
473
LPB93: dS = 0.0000 dN = 0.0000 w = nan
475
8 (YALD273_DNA5) vs. 5 (Pmex37_DNA21)
477
L(i): 922.5 270.0 232.5 sum= 1425.0
478
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
479
Nv(i): 1.0000 0.0000 0.0000 sum= 1.0000
480
A(i): 0.0016 0.0019 0.0043
481
B(i): 0.0011 -0.0000 -0.0000
482
LWL85: dS = 0.0047 dN = 0.0023 w = 0.4868 S = 322.5 N = 1102.5
483
LWL85m: dS = 0.0030 dN = 0.0027 w = 0.9065 S = 502.5 N = 922.5 (rho = 1.000)
484
LPB93: dS = 0.0030 dN = 0.0025 w = 0.8244
486
8 (YALD273_DNA5) vs. 6 (Ptre197_DNA2)
488
L(i): 922.5 270.0 232.5 sum= 1425.0
489
Ns(i): 4.0000 0.0000 3.0000 sum= 7.0000
490
Nv(i): 1.5000 0.5000 0.0000 sum= 2.0000
491
A(i): 0.0044 -0.0000 0.0131
492
B(i): 0.0016 0.0019 -0.0000
493
LWL85: dS = 0.0094 dN = 0.0055 w = 0.5801 S = 322.5 N = 1102.5
494
LWL85m: dS = 0.0060 dN = 0.0065 w = 1.0802 S = 502.5 N = 922.5 (rho = 1.000)
495
LPB93: dS = 0.0060 dN = 0.0060 w = 0.9989
497
8 (YALD273_DNA5) vs. 7 (WHR1_DNA225)
499
L(i): 922.5 269.5 233.0 sum= 1425.0
500
Ns(i): 0.0000 0.0000 3.0000 sum= 3.0000
501
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
502
A(i): -0.0000 -0.0000 0.0130
503
B(i): 0.0016 0.0056 -0.0000
504
LWL85: dS = 0.0094 dN = 0.0027 w = 0.2903 S = 322.8 N = 1102.2
505
LWL85m: dS = 0.0060 dN = 0.0033 w = 0.5399 S = 502.5 N = 922.5 (rho = 1.000)
506
LPB93: dS = 0.0060 dN = 0.0025 w = 0.4178
508
9 (Pop_trich_ch) vs. 1 (Pdel181_DNA2)
510
L(i): 922.5 269.0 233.5 sum= 1425.0
511
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
512
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
513
A(i): 0.0016 0.0019 0.0043
514
B(i): 0.0011 0.0037 -0.0000
515
LWL85: dS = 0.0047 dN = 0.0032 w = 0.6832 S = 323.2 N = 1101.8
516
LWL85m: dS = 0.0030 dN = 0.0038 w = 1.2689 S = 502.5 N = 922.5 (rho = 1.000)
517
LPB93: dS = 0.0030 dN = 0.0033 w = 1.1052
519
9 (Pop_trich_ch) vs. 2 (Pfre186_DNA2)
521
L(i): 922.5 269.5 233.0 sum= 1425.0
522
Ns(i): 2.5000 0.5000 1.0000 sum= 4.0000
523
Nv(i): 1.0000 1.0000 0.0000 sum= 2.0000
524
A(i): 0.0027 0.0019 0.0043
525
B(i): 0.0011 0.0037 -0.0000
526
LWL85: dS = 0.0047 dN = 0.0041 w = 0.8779 S = 322.8 N = 1102.2
527
LWL85m: dS = 0.0030 dN = 0.0049 w = 1.6325 S = 502.5 N = 922.5 (rho = 1.000)
528
LPB93: dS = 0.0030 dN = 0.0044 w = 1.4686
530
9 (Pop_trich_ch) vs. 3 (Pgra187_DNA2)
532
L(i): 922.5 270.0 232.5 sum= 1425.0
533
Ns(i): 4.0000 1.0000 2.0000 sum= 7.0000
534
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
535
A(i): 0.0044 0.0037 0.0087
536
B(i): 0.0016 0.0056 -0.0000
537
LWL85: dS = 0.0094 dN = 0.0064 w = 0.6803 S = 322.5 N = 1102.5
538
LWL85m: dS = 0.0060 dN = 0.0076 w = 1.2668 S = 502.5 N = 922.5 (rho = 1.000)
539
LPB93: dS = 0.0060 dN = 0.0069 w = 1.1440
541
9 (Pop_trich_ch) vs. 4 (Phet26_DNA21)
543
L(i): 922.0 270.0 233.0 sum= 1425.0
544
Ns(i): 0.0000 0.0000 0.0000 sum= 0.0000
545
Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
546
A(i): 0.0000 0.0000 0.0000
547
B(i): -0.0000 -0.0000 -0.0000
548
LWL85: dS = 0.0000 dN = 0.0000 w = nan S = 323.0 N = 1102.0
549
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
550
LPB93: dS = 0.0000 dN = 0.0000 w = nan
552
9 (Pop_trich_ch) vs. 5 (Pmex37_DNA21)
554
L(i): 922.5 270.0 232.5 sum= 1425.0
555
Ns(i): 1.5000 0.5000 1.0000 sum= 3.0000
556
Nv(i): 1.0000 0.0000 0.0000 sum= 1.0000
557
A(i): 0.0016 0.0019 0.0043
558
B(i): 0.0011 -0.0000 -0.0000
559
LWL85: dS = 0.0047 dN = 0.0023 w = 0.4868 S = 322.5 N = 1102.5
560
LWL85m: dS = 0.0030 dN = 0.0027 w = 0.9065 S = 502.5 N = 922.5 (rho = 1.000)
561
LPB93: dS = 0.0030 dN = 0.0025 w = 0.8244
563
9 (Pop_trich_ch) vs. 6 (Ptre197_DNA2)
565
L(i): 922.5 270.0 232.5 sum= 1425.0
566
Ns(i): 4.0000 0.0000 3.0000 sum= 7.0000
567
Nv(i): 1.5000 0.5000 0.0000 sum= 2.0000
568
A(i): 0.0044 -0.0000 0.0131
569
B(i): 0.0016 0.0019 -0.0000
570
LWL85: dS = 0.0094 dN = 0.0055 w = 0.5801 S = 322.5 N = 1102.5
571
LWL85m: dS = 0.0060 dN = 0.0065 w = 1.0802 S = 502.5 N = 922.5 (rho = 1.000)
572
LPB93: dS = 0.0060 dN = 0.0060 w = 0.9989
574
9 (Pop_trich_ch) vs. 7 (WHR1_DNA225)
576
L(i): 922.5 269.5 233.0 sum= 1425.0
577
Ns(i): 0.0000 0.0000 3.0000 sum= 3.0000
578
Nv(i): 1.5000 1.5000 0.0000 sum= 3.0000
579
A(i): -0.0000 -0.0000 0.0130
580
B(i): 0.0016 0.0056 -0.0000
581
LWL85: dS = 0.0094 dN = 0.0027 w = 0.2903 S = 322.8 N = 1102.2
582
LWL85m: dS = 0.0060 dN = 0.0033 w = 0.5399 S = 502.5 N = 922.5 (rho = 1.000)
583
LPB93: dS = 0.0060 dN = 0.0025 w = 0.4178
585
9 (Pop_trich_ch) vs. 8 (YALD273_DNA5)
587
L(i): 922.0 270.0 233.0 sum= 1425.0
588
Ns(i): 0.0000 0.0000 0.0000 sum= 0.0000
589
Nv(i): 0.0000 0.0000 0.0000 sum= 0.0000
590
A(i): 0.0000 0.0000 0.0000
591
B(i): -0.0000 -0.0000 -0.0000
592
LWL85: dS = 0.0000 dN = 0.0000 w = nan S = 323.0 N = 1102.0
593
LWL85m: dS = nan dN = nan w = nan S = nan N = nan (rho = nan)
594
LPB93: dS = 0.0000 dN = 0.0000 w = nan