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- Committer: Bazaar Package Importer
- Author(s): Teemu Ikonen
- Date: 2009-11-24 16:48:04 UTC
- mfrom: (3.1.4 squeeze)
- Revision ID: james.westby@ubuntu.com-20091124164804-liuvywcs6l45ibl3
Tags: 2.7.5-1
* New upstream release
* Imakefile: Use Debian versions of library dependencies
* control:
- Add build-deps to libcvector2-dev, libcqrlib2-dev, libneartree3-dev
- Update to standards-version 3.8.3
* Imakefile: Use Debian versions of library dependencies
* control:
- Add build-deps to libcvector2-dev, libcqrlib2-dev, libneartree3-dev
- Update to standards-version 3.8.3
- files added:
- doc/rasmol.man
- src/mswin/raswin.hlp
- files removed:
- src/languages/genlangsel_all
- src/mswin/raswin.exe
- src/mswin/raswin.exe.gz
- src/mswin/raswin.exe.gz.txt
- src/new_patches
- src/old_patches
- files modified:
- .symlinks
added
removed
ChangeLog.txt
1
ChangeLog
2
RasMol 2.7.4.2
3
Molecular Graphics Visualisation Tool
4
19 November 2007 (rev. 17 March 2008)
5
6
Based on RasMol 2.6 by Roger Sayle
7
Biomolecular Structures Group, Glaxo Wellcome Research & Development, Stevenage,
8
Hertfordshire, UK
9
Version 2.6, August 1995, Version 2.6.4, December 1998
10
Copyright (c) Roger Sayle 1992-1999
11
12
and Based on Mods by
13
14
+------------------------------------------------------------------------------+
15
| Author | Version, Date | Copyright |
16
|-------------------+----------------------+-----------------------------------|
17
| Arne Mueller | RasMol 2.6x1 May | (c) Arne Mueller 1998 |
18
| | 1998 | |
19
|-------------------+----------------------+-----------------------------------|
20
| Gary Grossman and | RasMol 2.5-ucb | (c) UC Regents/ModularCHEM |
21
| Marco Molinaro | November 1995 | Consortium 1995, 1996 |
22
| | RasMol 2.6-ucb | |
23
| | November 1996 | |
24
|-------------------+----------------------+-----------------------------------|
25
| Philippe Valadon | RasTop 1.3 August | (c) Philippe Valadon 2000 |
26
| | 2000 | |
27
|-------------------+----------------------+-----------------------------------|
28
| Herbert J. | RasMol 2.7.0 March | (c) Herbert J. Bernstein |
29
| Bernstein | 1999 | 1998-2008 |
30
| | RasMol 2.7.1 June | |
31
| | 1999 | |
32
| | RasMol 2.7.1.1 | |
33
| | January 2001 | |
34
| | RasMol 2.7.2 August | |
35
| | 2000 | |
36
| | RasMol 2.7.2.1 April | |
37
| | 2001 | |
38
| | RasMol 2.7.2.1.1 | |
39
| | January 2004 | |
40
| | RasMol 2.7.3 | |
41
| | February 2005 | |
42
| | RasMol 2.7.3.1 Apr | |
43
| | 06 | |
44
| | RasMol 2.7.4 Nov 07 | |
45
| | RasMol 2.7.4.1 Jan | |
46
| | 08 | |
47
| | RasMol 2.7.4.2 Mar | |
48
| | 08 | |
49
+------------------------------------------------------------------------------+
50
51
This Release by
52
Herbert J. Bernstein, Bernstein + Sons, 5 Brewster Lane, Bellport, NY, USA
53
yaya@bernstein-plus-sons.com
54
Copyright (c) Herbert J. Bernstein 1998-2008
55
56
----------------------------------------------------------------------
57
58
THIS IS A PRELIMINARY RELEASE INVOLVING EXTENSIVE MODIFICATIONS
59
***** USE WITH CAUTION ******
60
61
----------------------------------------------------------------------
62
63
IMPORTANT
64
65
This version is based directly on RasMol 2.7.3.1, RasMol 2.7.3, RasMol
66
2.7.2.1.1 and on RasMol 2.7.2, on RasMol 2.7.1.1, on RasTop 1.3, on RasMol
67
version 2.6_CIF.2, on RasMol version 2.6x1, on RasMol version 2.6.4, and
68
RasMol 2.5-ucb and 2.6-ucb. Please read the file NOTICE for important
69
notices which apply to this package and for license terms (GPL or RASLIC).
70
71
This version of RasMol is not in the public domain, but it is given freely
72
to the community in the hopes of advancing science. If you make changes,
73
please make them in a responsible manner, and please offer us the
74
opportunity to include those changes in future versions of RasMol.
75
76
----------------------------------------------------------------------
1
RasMol 2.7.5
2
Molecular Graphics Visualisation Tool
3
13 June 2009 (rev. 17 July 2009)
4
5
Based on RasMol 2.6 by Roger Sayle
6
Biomolecular Structures Group, Glaxo Wellcome Research & Development, Stevenage, Hertfordshire,
7
UK
8
Version 2.6, August 1995, Version 2.6.4, December 1998
9
Copyright (c) Roger Sayle 1992-1999
10
11
and Based on Mods by
12
13
+---------------------------------------------------------------------------------------------+
14
| Author | Version, Date | Copyright |
15
|----------------------+---------------------------------+------------------------------------|
16
| Arne Mueller | RasMol 2.6x1 May 1998 | (c) Arne Mueller 1998 |
17
|----------------------+---------------------------------+------------------------------------|
18
| Gary Grossman and | RasMol 2.5-ucb November 1995 | (c) UC Regents/ModularCHEM |
19
| Marco Molinaro | RasMol 2.6-ucb November 1996 | Consortium 1995, 1996 |
20
|----------------------+---------------------------------+------------------------------------|
21
| Philippe Valadon | RasTop 1.3 August 2000 | (c) Philippe Valadon 2000 |
22
|----------------------+---------------------------------+------------------------------------|
23
| Herbert J. Bernstein | RasMol 2.7.0 March 1999 | (c) Herbert J. Bernstein 1998-2008 |
24
| | RasMol 2.7.1 June 1999 | |
25
| | RasMol 2.7.1.1 January 2001 | |
26
| | RasMol 2.7.2 August 2000 | |
27
| | RasMol 2.7.2.1 April 2001 | |
28
| | RasMol 2.7.2.1.1 January 2004 | |
29
| | RasMol 2.7.3 February 2005 | |
30
| | RasMol 2.7.3.1 Apr 06 | |
31
| | RasMol 2.7.4 Nov 07 | |
32
| | RasMol 2.7.4.1 Jan 08 | |
33
| | RasMol 2.7.4.2 Mar 08 | |
34
| | RasMol 2.7.5 Jun 09 RasMol | |
35
| | 2.7.5.1 Jul 09 | |
36
+---------------------------------------------------------------------------------------------+
37
38
This Release by
39
Herbert J. Bernstein, Bernstein + Sons, 5 Brewster Lane, Bellport, NY, USA
40
yaya@bernstein-plus-sons.com
41
Copyright (c) Herbert J. Bernstein 1998-2009
42
43
-----------------------------------------------------------------------------------------
44
45
THIS IS A PRELIMINARY RELEASE INVOLVING EXTENSIVE MODIFICATIONS
46
***** USE WITH CAUTION ******
47
48
-----------------------------------------------------------------------------------------
49
50
IMPORTANT
51
52
This version is based directly on RasMol 2.7.4.2, RasMol 2.7.4.1, RasMol 2.7.4, RasMol
53
2.7.3.1, RasMol 2.7.3, RasMol 2.7.2.1.1 and on RasMol 2.7.2, on RasMol 2.7.1.1, on RasTop
54
1.3, on RasMol version 2.6_CIF.2, on RasMol version 2.6x1, on RasMol version 2.6.4, and
55
RasMol 2.5-ucb and 2.6-ucb. Please read the file NOTICE for important notices which apply
56
to this package and for license terms (GPL or RASLIC).
57
58
This version of RasMol is not in the public domain, but it is given freely to the
59
community in the hopes of advancing science. If you make changes, please make them in a
60
responsible manner, and please offer us the opportunity to include those changes in
61
future versions of RasMol.
62
63
-----------------------------------------------------------------------------------------
64
65
Changes from RasMol 2.7.4.2 to RasMol 2.7.5 include:
66
67
* Support for SBEVSL movie commands.
68
* Support for Lee-Richards surface approximation by contouring pseudo-Gaussian electron
69
densities.
70
* Selection of atoms by proximity to map contours
71
* Coloring of maps by the colors of neighboring atoms
72
* Signficant improvements to the GTK version by Teemu Ikonen
73
74
Changes to RasMol 2.7.4.2 to create RasMol 2.7.5.1:
75
76
[18/07/2009] HJB .symlinks
77
Update .symlinks to 2.7.5
78
79
[17/07/2009] HJB cif.c command.c raswin_install.nsi
80
Windows port changes: Update NSIS installer script
81
Change from mktemp to tmpfile and use rewind not freopen
82
83
[17/07/2009] HJB rasmol.doc rasmol.hlp rasmol.html cif.c command.c
84
rasmol.man rasmol.tex rasmol.vms raswin.rtf
85
Update doc for 2.7.5, and fix some spacing
86
87
[17/07/2009] HJB cif.c x11win.c
88
Correct X11 file menu for more than 5 open files
89
Correct cif_read_file CBFlib version to use a temporary file
90
91
[16/07/2009] HJB rasmol_install.sh
92
Correct reporting of font installs for Chinese.X and Japanese.X
93
94
[14/07/2009] HJB transfor.c
95
Fix missing scaling in new translate logic
96
97
[12/07/2009] HJB command.c command.h tokens.c trnasfor.c transfor.h
98
Preliminary movie play logic.
99
100
[11/07/2009] HJB command.c
101
Switch record templates to SSSSSS as per manual
102
Fix a bug in defer symbol linking
103
Report undefined symbols in calls to show defer symbol
104
105
[10/07/2009] HJB Imakefile_base command.c
106
Correct Imakefile_base
107
Add defer/execute movie interaction
108
109
[09/07/2009] HJB Imakefile_base rasmol_build_options.sh
110
Provide new script, rasmol_build_options.sh to reconstruct
111
new Imakefile from stable Imakefile_base
112
113
[09/07/2009] HJB Imakefile rasmol.c
114
Default Imakefile to use local copies of CQRLIB, CVECTOR,
115
XFORMSLIB and CBFLIB.
116
Change from use of fl_init to fl_initialize for xforms-1.0.91
117
118
[08/07/2009] HJB Imakefile abstree.c applemac.c cif.stx.tab.c cmndline.c
119
command.c command.h graphics.h gtkwin.c multiple.c
120
outfile.c rasmac.c rasmol.c rastxt.c raswin.c render.c
121
repres.c transfor.c transfor.h wbrotate.c wbrotate.h x11win.c
122
Partial changes for defer/execute command.
123
Update versions of external files used in Makefile.
124
Cleanup of varibables names for saving dial values.
125
126
[04/07/2009] HJB command.c maps.c molecule.c pixutils.c rasmol.h repres.c
127
transfor.c
128
Clean up errors in map color atom command and remove use
129
of polys with differing vertex colors by breaking up the
130
triangles into monchrome subtriangles
131
132
[02/07/2009] TPI molecule.c
133
Add #define _GNU_SOURCE to get the correct definition of basename()
134
135
[29/06/2009] HJB command.c
136
Fix to map select atom add
137
Add esd to map show for distances to surfaces
138
and make code for distances to reentrant surfaces more accurate
139
140
[25/06/2009] HJB Imakefile command.c molecule.c molecule.h
141
Update to use of NearTree 2.1.2
142
Add code to report surface fit stats in map show
143
144
[18/06/2009] HJB Imakefile build_MACOSX.sh build_all.sh command.c
145
rasmol_install.sh tokens.c tokens.h
146
Add 'add' and 'within' parameters to map select atoms command
147
Also allow search radius to be specified
148
149
[16/06/2009] HJB Imakefile
150
Update Imakefile for use of installed packages
151
152
[14/06/2009] HJB Imakefile
153
Set up loads of necessary external packages from sourceforge
154
155
[13/06/2009] HJB Imakefile applemac.c cmndline.c cmndline.h command.c
156
graphics.h maps.h molecule.c molecule.h mswin31.c
157
multiple.c rasmac.c tokens.c tokens.h transfor.c transfor.h
158
x11win.c
159
Integrate surface and movie code with gtk code
160
161
[03/06/2009] TPI rasmol.c
162
DisplayUsage(): Revert back to fputs
163
164
[27/05/2009] TPI render.c
165
Do not assume sizeof(Pixel) == sizeof(Long)
166
Use variables of type Pixel consistently in buffer clearing functions.
167
Remove version of ClearBuffers() which does not require memset().
168
169
[17/07/2009] TPI graphics.h
170
add startup representation flags
171
172
[17/07/2009] HJB rasmol.doc rasmol.html rasmol.man,
173
Update manual to 2.7.5
174
175
[12/05/2009] TPI gtkwin.c
176
Fix vte input problems by using vte input callback instead of
177
g_io_watch.
178
Various file open fixes to GTK version
179
Fix setting of initial window size.
180
Fix file open in GTK version: Copy the file name to global var
181
DataFileName before calling FetchFile.
182
Add file type filtering to GTK filechooser.
183
Whitespace fixes.
184
185
[12/05/2009] TPI rasmol.c
186
Fix text output with VTE in GTK interface.
187
188
[12/05/2009] TPI command.c command.h rasmol.c
189
Refactor file opening code. Add support for opening more
190
than one file from the command line.
191
Simplify file opening code, remove globs and allow to open files
192
with spaces and other 'special' characters.
193
Fix reading files from stdin with '-' arg.
194
195
[07/02/2009] HJB command.c command.h rasmac.c rasmol.c rastxt.c raswin.c
196
tokens.c tokens.h transfor.c transfor.h
197
Updates to enable the record mode to files. Use with caution,
198
there are some problems with picking up ReDrawFlag on changes
199
in appearance. Mouse motion helps to get past the glitch.
200
201
[06/02/2009] HJB command.c command.h graphics.h gtkwinc. maps.c rasmac.c
202
rasmol.c rastxt.c raswin.c tokens.c tokens.h transfor.c
203
transfor.h
204
First pass at SBEVSL movie-making commands
205
206
[16/11/2008] HJB command.c maps.c
207
Update to Lee-Richards approximation for probe of given
208
probe radius with new logic for map spread 0; map scale off;
209
so that set radius ; map resolution .67; map spread 0;
210
map scale off; map generate surface produces a good surface
211
approximation
212
213
[20/05/2009] TPI molecule.c
214
ReviseTitle(): If no identcode, use filename in the title
215
216
[20/05/2009] TPI gtkwin.c multiple.c
217
Update GTK molecule list when a molecule is picked
218
gtkwin.c: set_gtk_open_file(); new function.
219
UpdateGtkMoleculeList(); free allocated lists, reindent
220
multiple.c: SelectMolecule(); call set_gtk_open_file()
221
222
[20/05/2009] TPI gtkwin.c rasmol.c
223
Fix recent files support in GTK version
224
build_gtkmenu(): Set recent user sort type to most recently used.
225
Display 30 recent files.
226
Reindent.
227
228
[20/05/2009] TPI printing-resolution.glade sizechooser.glade
229
Remove useless response_id properties from glade files
230
231
[18/05/2009] TPI gtkwin.c rasmol.c
232
Really fix VTE output in GTK version.
233
Stop using PTYs for terminal io with VTE.
234
Don't touch the controlling terminal during init and reset.
235
Make Delete key work and ignore unhandled terminal escape sequences.
236
Use custom versions of RasMolExit and RasMolFatalExit in GTK version.
237
Add some keyboard shortcuts to the GTK GUI.
238
239
[18/05/2009] TPI gtkwin.c
240
Change image export shortcut to C-X
241
242
[14/05/2009] TPI rasmol_48x48.xpm Imakefile gtkwin.c
243
Add an xpm icon for Rasmol.
244
Set window icon in the GTK version.
245
246
[13/05/2009] TPI command.c
247
revert the filename globbing and extension handling code
248
249
[15/02/2009] HJB rasmac.c rasmol.c raswin.c
250
Clean up handling of ReDrawFlag for appearance changes
251
252
[31/10/2008] HJB command.c maps.c
253
First pass a Lee-Richards surface approximation for map
254
generate with map resolution 1; map cale off; map level .5;
255
map generate mesh
256
257
77
258
78
259
Changes from RasMol 2.7.4.1 to RasMol 2.7.4.2 include:
79
260
80
* Alignment of command line sizing and positioning options for Windows
81
and X-Windows version. The command line options -height nnnn, -width
82
nnnn, -xpos nnnn and -ypos nnnn may be used to set the size and
83
position of the initial window.
84
* Change of the encoding for Japanese messages and menus from SJIS to
85
EUC-JP, and corrections to the fontset handling for Chinese and
86
Japanese. Thanks to Mamoru Yamanishi for contributing the improved
87
fontset logic.
88
* Updates to the rasmol_install.sh and rasmol_run.sh scripts to support
89
Chinese and Japanese using cxterm.
261
* Alignment of command line sizing and positioning options for Windows and X-Windows
262
version. The command line options -height nnnn, -width nnnn, -xpos nnnn and -ypos
263
nnnn may be used to set the size and position of the initial window.
264
* Change of the encoding for Japanese messages and menus from SJIS to EUC-JP, and
265
corrections to the fontset handling for Chinese and Japanese. Thanks to Mamoru
266
Yamanishi for contributing the improved fontset logic.
267
* Updates to the rasmol_install.sh and rasmol_run.sh scripts to support Chinese and
268
Japanese using cxterm.
90
269
* Optional use of GTK. Thanks to Teemu Ikonen for the new GTK code.
91
270
92
271
Changes to RasMol 2.7.4 to create RasMol 2.7.4.1:
122
301
Changes from RasMol 2.7.3 to RasMol 2.7.4.1 include:
123
302
124
303
* Support for maps.
125
* Message and menu translations for Russian, Bulgarian, Japanese and
126
Chinese. Our thanks to G. Pozhvanov, G. Todorov, Nan Jia, Mamoru
127
Yamanishi and Katajima Hajime.
128
* Fix torsion angle calculation as per bug report and patch by Swati
129
Jain.
304
* Message and menu translations for Russian, Bulgarian, Japanese and Chinese. Our
305
thanks to G. Pozhvanov, G. Todorov, Nan Jia, Mamoru Yamanishi and Katajima Hajime.
306
* Fix torsion angle calculation as per bug report and patch by Swati Jain.
130
307
* Corrections by Ladislav Michnovic to port to more platforms.
131
308
* Code to read remediated PDB entries as suggested by Huanwang Yang
132
309
* Updated icons.
137
314
138
315
[19/01/2008] HJB
139
316
Release 2.7.4.1 created
140
317
141
318
[18/01/2008] HJB command.c, maps.c, maps.h, molecule.c
142
319
mswin31.c outfile.c outfile.h pixutils.c pixutils.h
143
320
rasmac.c, repres.c
151
328
and save maps in CBFlib format. Fix stereo.
152
329
153
330
[16/01/2008] HJB vector.c wbrotate.c
154
Fix multiple definitions of PI.
155
331
Fix multiple definitions of PI.
332
156
333
[14/01/2008] LM infile.c
157
334
Add include of string.h as per Ladislav Michnovic.
158
335
159
336
[14/12/2008] HJB graphics.h
160
337
Add buffers for slab and depth pixel-by-pixel
161
338
cutoff values.
162
339
163
340
[10/12/2007] GM langsel.c langsel.h languages/README.txt
164
341
languages/genlanselall languages/langsel*.utf.c,
165
342
tokens.c tokens.c
178
355
179
356
[19/11/2007] HJB
180
357
Release 2.7.4 created
181
358
182
359
[19/11/2007] HJB abstree.c abstree.h
183
360
Break out element identification from GetElemNumber
184
361
into GetElemDescrNumber. Fix torsion angle calculation
185
362
as per bug report and patch by Swati Jain.
186
363
187
364
[19/11/2007] HJB applemac.c
188
365
Add code to make languages sticky. Add register and
189
366
donate menu items, make languages sticky and launch
190
367
browsers.
191
368
192
369
[19/11/2007] HJB cif_fract.c
193
370
Correct calculation of matrix transforming orthogonal
194
371
to fractional coordinates and rewrite matrix
195
372
transforming fractional to orthogonal.
196
373
197
374
[19/11/2007] HJB command.c command.h
198
375
Add code for map commands. Make CommandError accessible
199
376
from other routines. Add Raster3D write/save option.
201
378
Chinese, Japanese and Russian commands. Allow
202
379
spacefill up to 12 Angstroms. Allow mirror and
203
380
rotate suboptions on write/save.
204
381
205
382
[19/11/2007] HJB font.h, graphics.h
206
383
Allow access to font parameters and support info
207
384
212
389
Make sensitive to PDB version to allow for handling of
213
390
remediated files, based on changes suggested by
214
391
Huanwang Yang of the RCSB PDB in April 2007.
215
392
216
393
[19/11/2007] GT langsel.c languages/
217
394
langsel.c restructured to be generated from separate
218
395
language files in the directory languages/
219
396
220
397
221
398
[19/11/2007] HJB molecule.c molecule.h
222
399
Add atom type processing and DA, DC, DG, DT, DI for
224
401
Huanwang Yang of the RCSB PDB in April 2007.
225
402
226
403
227
[19/11/2007] HJB multiple.c multiple.h
404
[19/11/2007] HJB multiple.c multiple.h
228
405
Manage map data for multiple molecules. Increase the number
229
406
of molecules from 5 to 15. Increase the number of characters
230
407
in the name to 33 characters.
234
411
235
412
[19/11/2007] HJB outfile.c outfile.h
236
413
Add Raster3D support based on code by V. Stanev. Partial
237
Vector PS map support.
414
Vector PS map support.
238
415
239
416
[19/11/2007] HJB pixutils.h
240
417
Fix stereo of ribbons and map surfaces. Protect against
241
418
duplicate definition of Knot struct. Make ClipPolygon
242
accessible.
419
accessible.
243
420
244
421
[19/11/2007] HJB rasmac.c rasmac.h
245
422
Increase terminal window to 132 characters. Add About dialog.
247
424
Chinese and Japonese. Add register and donate browser calls.
248
425
Add G4 CPU type. Extend export file types.
249
426
250
427
251
428
[19/11/2007] HJB RasMac.r
252
429
Update icons to new style. Extend Export menu to BMP...,
253
430
GIF..., IRIS RGB..., PPM..., Sun Raster, PostScript, PICT...,
254
431
Vector PS ..., Molscript ..., Kinemage ..., POVRay 3 ...,
255
VRML ..., Ramachandran ..., Raster3D ..., RasMol Script ....
432
VRML ..., Ramachandran ..., Raster3D ..., RasMol Script ....
256
433
Extend Apple menu to About RasMol..., RasMol Help ...,
257
Register ..., Donate ....
434
Register ..., Donate ....
258
435
259
436
[19/11/2007] HJB rasmol.c
260
437
Update to release 2.7.4 with map support.
276
453
= ContourTok), Map (MapTok), Mask (MaskTok), Mesh (WireframeTok),
277
454
Mirror (MirrorTok), New (NewTok), Next (NextTok), R3D or
278
455
Raster3D (Raster3DTok), Resolution (ResolutionTok), Spacing
279
(SpacingTok), Spread (SpreadTok), Width (SpreadTok),
456
(SpacingTok), Spread (SpreadTok), Width (SpreadTok),
280
457
281
458
282
459
[19/11/2007] HJB transfor.c transfor.h
295
472
Change text metrics to allow for Chineses and Japanese.
296
473
Try to make lack of access to shared memory non-fatal.
297
474
298
[03/10/2007] PK molecule.c
475
[03/10/2007] PK molecule.c
299
476
"RasMol - " string added to the title of the window.
300
477
301
[03/10/2007] PK multiple.c
478
[03/10/2007] PK multiple.c
302
479
Window title is updated when different molecule is selected.
303
480
304
481
[02/02/2007] HJB rasmol.c
313
490
[29/12/2006] HJB rasmol.c x11win.c
314
491
Update x11win.c and rasmol.c to add links to list of browsers
315
492
and to kill About dialog when the menu bar is selected
316
493
317
494
[29/12/2006] HJB rasmol_install.sh
318
495
Update rasmol_install.sh to allow recompilation of fonts
319
496
on install to handle openwin and other old systems that
353
530
Add mirror and rotate options for VRML.
354
531
355
532
356
Changes from RasMol 2.7.2.1.1 (the final reference release of RasMol 2.7.2) to
357
RasMol 2.7.3.1 include:
533
Changes from RasMol 2.7.2.1.1 (the final reference release of RasMol 2.7.2) to RasMol 2.7.3.1
534
include:
358
535
359
* Adjustment to the mouse handling for a better, more natural feel. Our
360
thanks to C. Chigbo for the suggestion.
536
* Adjustment to the mouse handling for a better, more natural feel. Our thanks to C.
537
Chigbo for the suggestion.
361
538
* Correction to cif.c for blanks after an initial quote mark.
362
539
* Correction to mswin31.c to restore lost initializations of ZRange and
363
540
DialValue[8..9].
364
* Modifications by Mamoru Yamanishi to Imakefile and rasmol.c to use
365
xforms for GUI file open. This patch needs the opens source xforms
366
1.0.90 library by Steve Lamont.
367
* Correction to molecule.c to correct input of xyz files. Thanks to
368
Stuart Prescott.
369
* Revision to CPK colors by C. Chigbo. The new colors are called CPKNEW.
370
The current CPK colors remain available as CPK.
371
* Correction to negative torsion angle monitors and to imprecise
372
distance and angle monitors by C. Chigbo. This patch corrects the
373
display of negative torsion angles caused by use of the unsigned short
374
type, and correctys imprecise distance and angle displays. This
375
extends the original patch which was just for torsion angles
376
(torsion.patch). A side effect of this change is to limit the
377
available range for distance monitors to approximately 327 AAngstroms.
378
* Initial code for display of solid Lee-Richards molecular surfaces.
379
This patch adds the basic code for display of Lee-Richards surfaces
380
with a new Molecular Surface menu item, and surface molecule <probe
381
radius> and surface solvent <probe radius> commands.
382
* Corrections of ribbons 0, etc. commands by R. Chachra. With this
383
patch, the wireframe 0, ribbon 0, cartoon 0, backbone 0, strands 0 and
384
trace 0 commands work the same as these command with off instead of 0.
541
* Modifications by Mamoru Yamanishi to Imakefile and rasmol.c to use xforms for GUI
542
file open. This patch needs the opens source xforms 1.0.90 library by Steve Lamont.
543
* Correction to molecule.c to correct input of xyz files. Thanks to Stuart Prescott.
544
* Revision to CPK colors by C. Chigbo. The new colors are called CPKNEW. The current
545
CPK colors remain available as CPK.
546
* Correction to negative torsion angle monitors and to imprecise distance and angle
547
monitors by C. Chigbo. This patch corrects the display of negative torsion angles
548
caused by use of the unsigned short type, and correctys imprecise distance and angle
549
displays. This extends the original patch which was just for torsion angles
550
(torsion.patch). A side effect of this change is to limit the available range for
551
distance monitors to approximately 327 AAngstroms.
552
* Initial code for display of solid Lee-Richards molecular surfaces. This patch adds
553
the basic code for display of Lee-Richards surfaces with a new Molecular Surface menu
554
item, and surface molecule <probe radius> and surface solvent <probe radius>
555
commands.
556
* Corrections of ribbons 0, etc. commands by R. Chachra. With this patch, the wireframe
557
0, ribbon 0, cartoon 0, backbone 0, strands 0 and trace 0 commands work the same as
558
these command with off instead of 0.
385
559
386
560
Changes to RasMol 2.7.3 to create RasMol 2.7.3.1:
387
561
397
571
[15/12/2005] HJB x11win.c
398
572
Fix mouse runaway by removing conflict of HeldStep
399
573
and HeldButton variable name use.
400
574
401
575
[16/07/2005] HJB abstree.c infile.c render.c
402
576
Correct sign errors in use of ztrl
403
577
404
578
405
579
406
580
426
600
[12/01/2005] Clarice Chigbo repres.c, render.c, repres.h
427
601
Correction to negative torsion angle monitors and to imprecise
428
602
distance and angle monitors; limits the available range for
429
distance monitors to approximately 327 Angstroms.
603
distance monitors to approximately 327 Angstroms.
430
604
431
605
[17/01/2005] Clarice Chigbo script.c
432
606
Output CPKNEW in scripts
453
627
correction to SubtractAtoms for bond rotation.
454
628
455
629
456
Changes from RasMol 2.7.1 (the final reference release of RasMol 2.7.2) to
457
RasMol 2.7.2.1.1 include:
630
Changes from RasMol 2.7.1 (the final reference release of RasMol 2.7.2) to RasMol 2.7.2.1.1
631
include:
458
632
459
* Post release patches to command.c were included to fix the handling of
460
load inline in the UCB multiple molecule environment. In addition
461
conditional code controlled by STRICT was disabled to restore
462
operation of load inline under windows. Thanks to Jan Reichert
463
<jr@imb-jena.de> for pointing out these problems. Thanks to E. Martz
464
<emartz@microbio.umass.edu> for pointing out an error in the Spanish
465
translation credits which has been corrected. Thanks to a report by
466
Julien Hering, the omission of a prior fix to the MS Windows version
467
was found and corrected on 7 May 2004.
468
* Adaption of the multilingual mods from RasMol 2.7.1.1 into Rasmol
469
2.7.2.1.
470
* Rewrite of the mouse handling and rotation logic to correct the
471
problems in 2.7.2 and make the feel of 2.7.2.1 closer to that of
472
RasMol 2.7.1.
633
* Post release patches to command.c were included to fix the handling of load inline in
634
the UCB multiple molecule environment. In addition conditional code controlled by
635
STRICT was disabled to restore operation of load inline under windows. Thanks to Jan
636
Reichert <jr@imb-jena.de> for pointing out these problems. Thanks to E. Martz
637
<emartz@microbio.umass.edu> for pointing out an error in the Spanish translation
638
credits which has been corrected. Thanks to a report by Julien Hering, the omission
639
of a prior fix to the MS Windows version was found and corrected on 7 May 2004.
640
* Adaption of the multilingual mods from RasMol 2.7.1.1 into Rasmol 2.7.2.1.
641
* Rewrite of the mouse handling and rotation logic to correct the problems in 2.7.2 and
642
make the feel of 2.7.2.1 closer to that of RasMol 2.7.1.
473
643
* Addition of French menus and messages
474
644
* Addition of Italian menus and messages
475
* Adoption of picking for selection of atoms, groups or chains from
476
RasTop 1.3.
645
* Adoption of picking for selection of atoms, groups or chains from RasTop 1.3.
477
646
* Adoption of backclipping from RasTop 1.3
478
647
* Adoption of shadepower command for glassy surfaces from RasTop 1.3
479
648
* Change of the menu stereo option to rotate cross-wall-none
480
649
* Allow longer atom names (12 characters) in CIFs.
481
* Incorporation of some of the code from the UCB RasMol variants. Out
482
thanks to Eileen Lewis and Marco Molinaro for their cooperation in
483
contributing the UCB Enhanced RasMol code for incorporation into the
484
RasMol 2.7 series.
485
* Code to represent bonds in and to alternate conformers with a narrowed
486
portion in the middle of each bond.
487
* An attempt to fix some of the chirality reversals in some of the
488
output modes.
650
* Incorporation of some of the code from the UCB RasMol variants. Out thanks to Eileen
651
Lewis and Marco Molinaro for their cooperation in contributing the UCB Enhanced
652
RasMol code for incorporation into the RasMol 2.7 series.
653
* Code to represent bonds in and to alternate conformers with a narrowed portion in the
654
middle of each bond.
655
* An attempt to fix some of the chirality reversals in some of the output modes.
489
656
* Fixes for some of the problems reported since the last release.
490
657
491
658
Post-release changes to RasMol 2.7.2.1.1:
492
659
493
660
494
[07/05/04] HJB mswin31.c
661
[07/05/04] HJB mswin31.c
495
662
restored lost fix for intialization of ZRange and
496
663
DialValue[8..9] and rebuilt raswin.exe. Thanks to
497
664
Julien Hering.
498
665
499
[14/02/04] HJB pixutils.c
666
[14/02/04] HJB pixutils.c
500
667
remove static from declaration of ClipVector.
501
668
502
[14/02/14] HJB cif_stx.c
669
[14/02/14] HJB cif_stx.c
503
670
remove trailing characters from #endif.
504
671
505
[03/02/04] HJB Makefile.in
672
[03/02/04] HJB Makefile.in
506
673
Change transfer to transfor in 2 dependencies. Thanks
507
674
to R. Harlow.
508
675
509
676
Changes to RasMol 2.7.2.1 to create RasMol 2.7.2.1.1:
510
677
511
678
512
[26/01/04] HJB abstree.c
679
[26/01/04] HJB abstree.c
513
680
Fix warning on sprintf calls with unused args, match long
514
681
variables with %ld format descriptors.
515
682
516
[26/01/04] HJB cif.c
683
[26/01/04] HJB cif.c
517
684
Add brackets to avoid compiler warnings on dangling elses.
518
685
Fix cif_lex to parse 'O''' correctly. Change from
519
686
WORD to CIFWORD to avoid conflict with windows.h.
520
687
521
[26/01/04] HJB cif.h
688
[26/01/04] HJB cif.h
522
689
Change from WORD to CIFWORD to avoid conflict with windows.h.
523
690
Add prototype for cif_free_handle.
524
691
525
[26/01/04] HJB cif.stx.tab.c
692
[26/01/04] HJB cif.stx.tab.c
526
693
Change from WORD to CIFWORD to avoid conflict with windows.h.
527
694
528
[26/01/04] HJB cif_ctonum.c
695
[26/01/04] HJB cif_ctonum.c
529
696
Remove unused variable dndec
530
697
531
[26/01/04] HJB cif_fract.c
698
[26/01/04] HJB cif_fract.c
532
699
Remove unused variable kk
533
700
534
[26/01/04] HJB cif_stx.c
701
[26/01/04] HJB cif_stx.c
535
702
Change from WORD to CIFWORD to avoid conflict with windows.h.
536
703
Add include of rasmol.h.
537
704
538
[26/01/04] HJB command.c
705
[26/01/04] HJB command.c
539
706
Initialize variables to avoid compiler warnings. Use %ld
540
707
format for long variables. Fix RotMode == RotBond which
541
708
should have been an assignment. Add parens on logical
542
709
expressions.
543
710
544
[26/01/04] HJB command.h
711
[26/01/04] HJB command.h
545
712
Add prototypes for ResumePauseCommand, InterruptPauseCommand.
546
713
547
[26/01/04] HJB graphics.h
714
[26/01/04] HJB graphics.h
548
715
Add include of windows.h
549
716
550
[26/01/04] HJB infile.c
717
[26/01/04] HJB infile.c
551
718
Removed unused ReadValue2. Add brackets to avoid compiler
552
719
warnings on dangling elses. Initialize variables to avoid
553
720
compiler warnings.
554
721
555
[26/01/04] HJB langsel.c langsel_mac.c
722
[26/01/04] HJB langsel.c langsel_mac.c
556
723
Add include of string.h
557
724
558
[26/01/04] HJB molecule.c
725
[26/01/04] HJB molecule.c
559
726
Add include of graphics.h. Change to %ld format for longs.
560
727
Remove unused variables. Add brackets to avoid compiler warnings
561
728
on dangling elses.
562
729
563
[26/01/04] HJB molecule.h
730
[26/01/04] HJB molecule.h
564
731
Add prototype of TestDisulphideBridge.
565
732
566
[26/01/04] HJB multiple.c
733
[26/01/04] HJB multiple.c
567
734
Fix reversed comment terminator. Add include of string.h. Add
568
735
brackets to initializer to match structure.
569
736
570
[26/01/04] HJB multiple.h
737
[26/01/04] HJB multiple.h
571
738
Add prototype of ReRadius.
572
739
573
[26/01/04] HJB outfile.c
740
[26/01/04] HJB outfile.c
574
741
Initialize variables to avoid compiler warnings. Change to %ld
575
742
for long.
576
743
577
[26/01/04] HJB pixutils.c
744
[26/01/04] HJB pixutils.c
578
745
Initialize variables to avoid compiler warnings. Removed unused
579
746
variables.
580
747
581
[26/01/04] HJB pixutils.h
748
[26/01/04] HJB pixutils.h
582
749
Add prototypes of DrawTwinLine, ClipLine, ClipTwinLine,
583
750
ClipDashLine, DrawTwinVector, ClipVector, ClipTwinVector,
584
751
ClipDashVector.
585
752
586
[26/01/04] HJB rasmol.c
753
[26/01/04] HJB rasmol.c
587
754
Add parens to avoid compiler warning.
588
755
589
[26/01/04] HJB rasmol.h
756
[26/01/04] HJB rasmol.h
590
757
Set version and date. Add include of stdlib.h for malloc.
591
758
592
[26/01/04] HJB render.c
759
[26/01/04] HJB render.c
593
760
Change the handling of very long longs to avoid a compiler
594
761
warning. Use %ld format for longs.
595
762
596
[26/01/04] HJB repres.c
763
[26/01/04] HJB repres.c
597
764
Remove unused variables. Use %ld format for longs. Initialize
598
765
variables to avoid compiler warnings.
599
766
600
[26/01/04] HJB repres.h
767
[26/01/04] HJB repres.h
601
768
Add prototype of LoadDotsFile.
602
769
603
[26/01/04] HJB script.c
770
[26/01/04] HJB script.c
604
771
Add include of string.h. Use %ld format for longs. Initialize
605
772
variables to avoid compiler warnings. Remove unused variables.
606
773
Fix sign of trailing bits on VRML z coordinates.
607
774
608
[26/01/04] HJB script.h
775
[26/01/04] HJB script.h
609
776
Add prototype of WritePOVRay3File.
610
777
611
[26/01/04] HJB tokens.h
778
[26/01/04] HJB tokens.h
612
779
Add parens in definition of IsImageToken.
613
780
614
[26/01/04] HJB transfor.c
781
[26/01/04] HJB transfor.c
615
782
Add parens for logical expression. Remove unused variables.
616
783
Initialize variables to avoid compiler warnings.
617
784
618
[26/01/04] HJB transfor.h
785
[26/01/04] HJB transfor.h
619
786
Add prototype of DefineShade, RMat2RV, RV2RMat.
620
787
621
[26/01/04] HJB wbrotate.c
788
[26/01/04] HJB wbrotate.c
622
789
Add include of cmndline.h. Remove unused variables. Initialize
623
790
variables to avoid compiler warnings. Use %ld format for longs.
624
791
Add value for a returns that need them.
625
626
[26/01/04] HJB x11win.c
792
793
[26/01/04] HJB x11win.c
627
794
Initialize variables to avoid compiler warnings. Add brackets to
628
795
avoid compiler warnings on dangling elses.
629
796
630
[14/04/02] HJB Imakefile
797
[14/04/02] HJB Imakefile
631
798
Update to allow scripts to make multiple pixel depths by
632
799
setting PIXELDEPTH to 8, 16 or 32 externally. Add default
633
800
flags for various HP architectures.
634
801
635
[13/04/02] HJB cif.c
802
[13/04/02] HJB cif.c
636
803
Reduce warnings by casting uses of size_t.
637
804
638
[13/04/02] HJB cif_ctonum.c
805
[13/04/02] HJB cif_ctonum.c
639
806
Reduce warnings by casting to int for pointers indptr-test.
640
807
641
[13/04/02] HJB command.c
808
[13/04/02] HJB command.c
642
809
Reduce warnings by explicit use of long (rather than Long)
643
810
for fpos, and casting to size_t for comparisons, etc.
644
811
645
[13/04/02] HJB infile.c
812
[13/04/02] HJB infile.c
646
813
In ProcessPDBBond, match types of srcatm and dstatom by
647
814
changing from int to Long, casting to size_t for
648
815
comparisons, etc.
649
816
650
[13/04/02] HJB molecule.c
817
[13/04/02] HJB molecule.c
651
818
Change MemSize from int to size_t.
652
819
653
[13/04/02] HJB rasmol.c
820
[13/04/02] HJB rasmol.c
654
821
Change AdviseLen from int to size_t, change socket to xsocket,
655
822
change __hpux to HPUX_LEGACY
656
823
657
[13/04/02] HJB rasmol.h
824
[13/04/02] HJB rasmol.h
658
825
Add HPUX_LEGACY for old style hpux select.
659
826
660
[13/04/02] HJB render.c
827
[13/04/02] HJB render.c
661
828
Make test of sizeof(Long) > 4 conditional on not defining
662
829
_LONGLONG. Make some changes from Long to long, etc.
663
830
664
[13/04/02] HJB x11win.c
831
[13/04/02] HJB x11win.c
665
832
Cast some pointer diffs to int, change some Long to long,
666
833
etc.
667
834
668
[29/06/01] HJB command.c
835
[29/06/01] HJB command.c
669
836
Correct logic for inline load of a new molecule from
670
837
data file treated as a script.
671
838
672
[21/04/01] HJB all
839
[21/04/01] HJB all
673
840
Fix credit for initial Spanish translation. Thanks to
674
841
E. Martz.
675
842
676
[19/04/01] HJB command.c
843
[19/04/01] HJB command.c
677
844
Post release fix to handling of load inline in
678
845
windows version due to problem with STRICT logic.
679
846
Thanks to Jan Reichert <jr@imb-jena.de> for pointing
680
847
out the problem.
681
848
682
[18/04/01] HJB command.c
849
[18/04/01] HJB command.c
683
850
Post release fix to handling of load inline in UCB
684
851
multiple molecule environment. Thanks to Jan
685
852
Reichert <jr@imb-jena.de> for pointing out the
687
854
688
855
Changes from RasMol 2.7.1.1 and 2.7.2 to create RasMol 2.7.2.1:
689
856
690
[14/04/01] HJB script.c
857
[14/04/01] HJB script.c
691
858
Correct error in writing scripts with partial use of spacefill.
692
859
Thanks to Steven Vik <svik@mail.smu.edu> for reporting the
693
860
problem.
694
861
695
[14/04/01] HJB rasmol.doc, itasmol2721.hlp, esrasmol.html
862
[14/04/01] HJB rasmol.doc, itasmol2721.hlp, esrasmol.html
696
863
Updated manuals for 2.7.2.1.
697
698
[02/04/01] HJB abstree.c, abstree.h
864
865
[02/04/01] HJB abstree.c, abstree.h
699
866
Increase space for atom names from 4 to 12 characters.
700
867
701
[02/04/01] HJB applemac.c
868
[02/04/01] HJB applemac.c
702
869
Add symbolic ZRange, add 2 dials. See [12/01/01] changes for langsel.
703
870
704
[02/04/01] HJB cmndline.c, cmndline.h
871
[02/04/01] HJB cmndline.c, cmndline.h
705
872
Reworked all exits on mouse motion processing to leave values
706
873
in DialValues or WRot..., etc depending on RotMode. Made HeldButton
707
874
a global for future reference.
708
875
709
[02/04/01] HJB command.c, rasmol.c, rasmac.c, raswin.c
876
[02/04/01] HJB command.c, rasmol.c, rasmac.c, raswin.c
710
877
Change stereo command to cycle cross-wall-none.
711
878
712
[02/04/01] HJB command.c, script.c, transfor.c
879
[02/04/01] HJB command.c, script.c, transfor.c
713
880
Rework output of rotation information.
714
881
715
[02/04/01] HJB infile.c
882
[02/04/01] HJB infile.c
716
883
Increase limit on atom names for CIF from 4 to 12 characters.
717
884
718
[02/04/01] HJB langsel.c langsel_mac.c
885
[02/04/01] HJB langsel.c langsel_mac.c
719
886
Add French (thanks to Jean-Pierre Demailly
720
887
<Jean-Pierre.Demailly@ujf-grenoble.fr>) and Italian (Giuseppe Martini
721
888
<martini@iigb.na.cnr.it> and Giovanni Paolella <paolella@dbbm.unina.it>
722
889
with contributions by: A. Davassi, M. Masullo, C. Liotto, G. Paolella,
723
890
G. Martini. Adapt to 2.7.2 menu structure.
724
891
725
[02/04/01] HJB mswin31.c
892
[02/04/01] HJB mswin31.c
726
893
Removed "Printing Completed" message.
727
894
728
[02/04/01] HJB multiple.c
895
[02/04/01] HJB multiple.c
729
896
Save DotPtr to fix misplaced dots in multiple molecules. Save
730
897
LastTX, LastTY, LastTZ, LocalRadius, ShiftS, XlateCen. Make
731
898
"Insufficient memory" message be language dependent
732
899
MsgStrs[StrMalloc]
733
900
734
[02/04/01] HJB outfile.c, pixutils.c, repres.c
901
[02/04/01] HJB outfile.c, pixutils.c, repres.c
735
902
Rework backclipping separating ZOffset from new DepthValue,
736
903
define BitBack
737
904
738
[02/04/01] HJB tokens.c
905
[02/04/01] HJB tokens.c
739
906
Added the following tokens relative to 2.7.2, includes tokens
740
907
added for 2.7.1.1:
741
908
742
909
ASSE AxesTok
743
910
ASSI AxesTok
744
911
CADENA ChainTok
761
928
ETIQUETA LabelTok
762
929
ETIQUETAS LabelTok
763
930
ETICHETTA LabelTok
764
ETICHETTE LabelTok
931
ETICHETTE LabelTok
765
932
FILODIFERRO WireframeTok
766
933
FILDIFERRO WireframeTok
767
FILI StrandsTok
934
FILI StrandsTok
768
935
FRENCH FrenchTok
769
936
GIRO TurnTok
770
937
GIROS TurnTok
790
957
VIGNETTA CartoonTok
791
958
VISUALIZZA DisplayTok
792
959
793
[02/04/01] HJB transfor.c
960
[02/04/01] HJB transfor.c
794
961
Rework interaction of mouse, local rotation and world rotation
795
962
to make horizontal mouse motion of individual molecule rotate
796
963
horizontally even when outer world rotation creates a tilt.
799
966
RasTop centering to restore 2.7.2 behavior -- defaults to
800
967
center the new rotation on the screen.
801
968
802
[02/04/01] HJB several
969
[02/04/01] HJB several
803
970
Make dial indices symbolic.
804
971
805
[02/04/01] HJB wbrotate.c, wbrotate.h
972
[02/04/01] HJB wbrotate.c, wbrotate.h
806
973
Rework interaction of mouse and world rotation to make
807
974
horizontal mouse motion of individual molecule rotate horizontally
808
975
even when outer world rotation creates a tilt.
812
979
813
980
Note: These mods do not reflect the complete source of RasTop 1.3.
814
981
815
[31/01/00] PV command.c
982
[31/01/00] PV command.c
816
983
Added code for selecting atom areas with mouse: changed
817
984
PickAtom() function name in PickAtoms(); changed PicAtome
818
985
identifier in PickAtom; added function SelectArea()
819
986
and DisplayArea(); added code for command "select view"
820
987
821
[30/01/00] PV command.c
988
[30/01/00] PV command.c
989
822
990
Added command "select view" and corresponding code,
823
991
which allows to select a part of a molecule based on screen display.
824
992
825
[16/01/00] PV cmndline.c
993
[16/01/00] PV cmndline.c
826
994
In PerformMouseFunc() corrected MM_CLIP to access clipping with
827
995
the mouse, added MM_DEPT to access backclipping (depth) with the mouse.
828
996
829
[16/01/00] PV transfor.h, transfor.c, token.h, token.c, script.c
997
[16/01/00] PV transfor.h, transfor.c, token.h, token.c, script.c
830
998
Added ShadePower in DefineColourMap(), which brings some interesting
831
999
shade variations. Added ShadePowerTok and command "set shade x"
832
1000
with x between -20 to 20.
833
1001
834
[03/01/00] PV transfor.c
1002
[03/01/00] PV transfor.c
835
1003
Fixed bug (and modified) function Power() to handle Specpower
836
1004
837
[12/14/99] PV
1005
[12/14/99] PV
838
1006
Added variables ShiftS and UseAutoDepthCue that adjust DepthCue
839
1007
with slabbing.
840
1008
841
[14/12/99] PV transform.c
1009
[14/12/99] PV transform.c
842
1010
Added function CentreTransform() to either move the origin in the
843
1011
molecule or move the molecule to the origin (origin = True ).
844
1012
Added variables Cenx,y,z, which mesure distance centre-origin.
845
1013
846
[29/09/99] PV molecule.c
1014
[29/09/99] PV molecule.c
847
1015
Fixed bug in FindCisBonds() (no zeroing of last group cisbondflag);
848
1016
Added ability to convert triple bond to single (CreateBondOrder())
849
1017
850
[24/09/99] PV cmndline.c
1018
[24/09/99] PV cmndline.c
851
1019
Correlated mouse binding to global variable MouseMode.
852
1020
Removed EnableMenus(state==1) in ResetCommandLine().
853
1021
Fixed mouse binding with INVERT on y values.
855
1023
to mouse binding for deselection. Fixed INVERT on y
856
1024
value for mouseup.
857
1025
858
[21/09/99] PV command.c, render.h, render.c, transfor.h, transfor.c
1026
[21/09/99] PV command.c, render.h, render.c, transfor.h, transfor.c
859
1027
Added four new picking modes: select an atom: PickAtom; select
860
1028
a group: PickGroup; select a chain: PickChain; modify bonding/add
861
1029
multiple bonds: PickBond. Allowed picking parameter shift = -1
864
1032
and 2.7.2 bond picking was used in 2.7.2.1 instead of the
865
1033
RasTop version]
866
1034
867
[22/09/99] PV abstree.h, abstree.c
1035
[22/09/99] PV abstree.h, abstree.c
868
1036
First step for saving atomsets & identifiers in RasMol scripts
869
1037
(SetSize to 100 and SymEntry and SymbolTable in header).
870
1038
871
[21/09/99] PV cif.h
1039
[21/09/99] PV cif.h
872
1040
Fixed missing declaration of cif_parse in cif.h
873
874
[21/09/99] PV cmndline.c
1041
1042
[21/09/99] PV cmndline.c
875
1043
In ProcessCharacter()) added ESC (0x1b) character to interrupt
876
script pausing.
1044
script pausing.
877
1045
878
[21/09/99] PV command.c
1046
[21/09/99] PV command.c
879
1047
Changed output for one-letter-code sequence in series of 50
880
1048
characters with a space each subgroup of 10.
881
882
[21/09/99] PV infile.c
1049
1050
[21/09/99] PV infile.c
883
1051
Compiling problems with RasMol 2.7.1 files (VisualC++ 5.0)
884
1052
- explicited all conversions long to short in infile.c /*casting*/
885
1053
886
[21/09/99] PV pixutils.c
1054
[21/09/99] PV pixutils.c
887
1055
Compiling problems with RasMol 2.7.1 files (VisualC++ 5.0)
888
1056
- fixed casting in drawstar() and clipstar() in pixutils.c
889
1057
Set ARCSIZE to 32768 under MSWIN, allowing drawing cylinders with
890
1058
radii up to 250 RasMol Units. Current implementation gives a maximum
891
1059
of 75 RU at maximum zooming. Mac implementation should be verified.
892
1060
893
[14/07/99] PV abstree.c transfor.c
1061
[14/07/99] PV abstree.c transfor.c
894
1062
(Adapted from RasTop 1.3) Added shortcuts for direct evaluations
895
1063
of atomsets (BuildAtomSet(), SelectZoneExpr()).
896
897
[14/07/99] PV abstree.c, transfor.c
1064
1065
[14/07/99] PV abstree.c, transfor.c
898
1066
Added shortcuts for direct evaluations of atomsets (BuildAtomSet(),
899
1067
SelectZoneExpr()); gain up to 15 seconds of computer time on very
900
1068
large molecules.
901
1069
902
[10/07/99] PV cif.c
903
Fixed memory allocation bug in cif_make_handle
1070
[10/07/99] PV cif.c
1071
Fixed memory allocation bug in cif_make_handle
904
1072
905
1073
Changes from RasMol 2.7.1 to create RasMol 2.7.2:
906
1074
907
[28/08/00] HJB all
1075
[28/08/00] HJB all
908
1076
Updates to comments, resources, etc for preliminary testing
909
1077
release.
910
911
[21/08/00] HJB abstree.c, abstree.h
1078
1079
[21/08/00] HJB abstree.c, abstree.h
912
1080
Change type Atom to RAtom to avoid conflicts with X.
913
1081
Offset all uses of xorg, yorg, zorg databse entried with
914
1082
fxorg, fyorg, fzorg database entries for UCB bond
915
1083
rotation. Change char* strings to unsigned char* strings
916
1084
to allow for extra UCB Angstrom and degree symbols.
917
1085
918
[21/08/00] HJB applemac.c
1086
[21/08/00] HJB applemac.c
919
1087
Change from use of toolbar settings to use of RotMode.
920
1088
Add new "Settings" menu.
921
1089
922
[21/08/00] HJB cmndline.c
1090
[21/08/00] HJB cmndline.c
923
1091
Adapt GSG code from UCB mods for mouse moves, to make
924
1092
the moves control bond rotation, molecule rotation, or
925
1093
world rotation, but change from use of toolbar settings
926
1094
to use of RotMode
927
1095
928
[21/08/00] HJB command.c
1096
[21/08/00] HJB command.c
929
1097
Add new error message (ErrNoBond) for "Bond for rotation
930
1098
not picked". Add new parameter for alternate conformer
931
1099
bond waist radius. Adapt to fxorg, etc. offsets. Adapt
934
1102
and show zoom commands. Add bond, unbond commands.
935
1103
Add rotate bond, rotate molecule, rotate all command.
936
1104
937
[21/08/00] HJB command.h
1105
[21/08/00] HJB command.h
938
1106
Add space after "__huge"
939
1107
940
[21/08/00] HJB font.h
1108
[21/08/00] HJB font.h
941
1109
Adapt GSG UCB mods characters for Angstrom and degree to be
942
1110
additional symbols, not repalcements.
943
1111
944
[21/08/00] HJB graphics.h
1112
[21/08/00] HJB graphics.h
945
1113
Add new redraw flag, "RFRotBond" to signal that a bond
946
1114
rotation is involved, and add it to RFRotate, RFApply and
947
1115
RFInitial. Add ZRange. Move main X window definitions
948
1116
into this header to facilitate toolbar development.
949
1117
950
[21/08/00] HJB infile.c, infile.h
1118
[21/08/00] HJB infile.c, infile.h
951
1119
Change all Atom types to RAtom. Add xorg, etc. offsets
952
1120
on all coordinate calauclations. Move GroupPool definition
953
1121
to header.
954
955
[21/08/00] HJB molecule.h and all referring files
1122
1123
[21/08/00] HJB molecule.h and all referring files
956
1124
Change type Atom to RAtom to avoid conflicts with X.
957
1125
Add fxorg, fyorg, fzorg database entries for UCB bond
958
1126
rotation offsets.
959
1127
960
[21/08/00] HJB multiple.c
1128
[21/08/00] HJB multiple.c
961
1129
Remove all use of the toolbar, converting to menu.
962
1130
Detect last element of file name string. Update VarList
963
1131
for current variables. Change to ANSI C prototypes.
964
1132
Move revised DrawMoleculeList from GSG's UCB toolbar.c
965
1133
into multiple.c, but drop list only into MolName[].
966
1134
967
[21/08/00] HJB wbrotate.c, wbrotate.h
1135
[21/08/00] HJB wbrotate.c, wbrotate.h
968
1136
Remove all use of the toolbar, converting to menu.
969
1137
Change to ANSI C prototypes. Revise bond and world
970
1138
rotation logic to use full rotation, nor increment,
973
1141
coordinates. Add database of selected bonds and logic
974
1142
to add bonds on the fly and remove them.
975
1143
976
[21/08/00] HJB vector.c, vector.h
1144
[21/08/00] HJB vector.c, vector.h
977
1145
Change to ANSI C prototypes. Replace Vector and Matrix
978
1146
with their array definitions for clarity.
979
1147
980
[27/02/00] HJB transfor.c, transfor.h
1148
[27/02/00] HJB transfor.c, transfor.h
981
1149
Add alternate conformer bond radius to EnableWireFrame
982
1150
983
[23/02/00] HJB infile.c
1151
[23/02/00] HJB infile.c
984
1152
Fix *- for - typo in XYZ and MOL2 input of coordinates
985
1153
986
[23/02/00] HJB molecule.c
1154
[23/02/00] HJB molecule.c
987
1155
Fix D2O to DOD mapping. Thanks to Brian W. Beck.
988
1156
989
[23/02/00] HJB pixutils.c
1157
[23/02/00] HJB pixutils.c
990
1158
New code for alternate conformer bonds.
991
1159
992
[23/02/00] HJN raswin.c
1160
[23/02/00] HJN raswin.c
993
1161
Update WinMail entry to WINAPI
994
1162
995
[29/01/00] HJB molecule.c
1163
[29/01/00] HJB molecule.c
996
1164
Comment out chain by chain reset of bonding to allow for
997
1165
het groups after TER at expense of slower bonding.
998
1166
999
[29/01/00] HJB mswin31.c
1167
[29/01/00] HJB mswin31.c
1000
1168
Update printer logic for modern windows specs.
1001
1169
1002
[29/01/00] HJB rasmac.c
1170
[29/01/00] HJB rasmac.c
1003
1171
Fix reference of monaco font.
1004
1172
1005
[15/07/99] HJB (for AR) raswin.c
1173
[15/07/99] HJB (for AR) raswin.c
1006
1174
Add check for \r. Thanks for Andrew Raine.
1007
1175
1008
[15/07/99] RS raswin.c
1176
[15/07/99] RS raswin.c
1009
1177
Add .ML2 and .SY2 extensions for Sybyl and MOL2.
1010
1178
1011
1179
1012
1180
Changes adapted from UCB rasmol in creating RasMol 2.7.2:
1013
1181
1014
Note: These mods do not reflect the complete source of UCB RasMol. In
1015
particular toolbar.h and toolbar.c have not been used in this pass, and
1016
the full source of UCB RasMol has not yet been recovered.
1182
Note: These mods do not reflect the complete source of UCB RasMol. In particular
1183
toolbar.h and toolbar.c have not been used in this pass, and the full source of UCB
1184
RasMol has not yet been recovered.
1017
1185
1018
[30/11/95] GSG rasmac.c
1186
[30/11/95] GSG rasmac.c
1019
1187
Hide command window. Add help screen menu logic. Add hooks to
1020
1188
load multiple molecules. Add toolbar menu to Windows menu. Make
1021
1189
mouse moves control bond rotation, molecule rotation or world
1022
1190
rotation depending on tool bar button choices. Same for scroll
1023
1191
bars.
1024
1025
[29/11/95] GSG applemac.c
1192
1193
[29/11/95] GSG applemac.c
1026
1194
Change default background for printing to white.
1027
1195
Hook scroll bar H values to bond angle (BRotValue),
1028
1196
molecule rotation angle (DialValue[1]) or
1033
1201
tool bar settings. Allow file open when less than
1034
1202
MAX_MOLECULES molecules.
1035
1203
1036
[21/08/00] GSG font.h
1204
[21/08/00] GSG font.h
1037
1205
Add characters for Angstrom and degree as replacements
1038
1206
for vertical bar and tilde.
1039
1040
[16/11/95] GSG render.c, render.h
1207
1208
[16/11/95] GSG render.c, render.h
1041
1209
Add PickBond. Add hooks to draw multiple molecules. Automatically
1042
1210
switch to the molecule of any picked atom. Add monitor for picked
1043
1211
distance, angle or torsion angle.
1044
1212
1045
[14/11/95] GSG transfor.c
1213
[14/11/95] GSG transfor.c
1046
1214
Add hooks for bond rotation and global rotation.
1047
1048
[14/11/95] GSG vector.c, vector.h, wbrotate.c, wbrotate.h
1215
1216
[14/11/95] GSG vector.c, vector.h, wbrotate.c, wbrotate.h
1049
1217
New routines introduced with UCB mods to allow for
1050
1218
bond rotations and global rotation.
1051
1219
1052
[14/11/95] GSG infile.c
1220
[14/11/95] GSG infile.c
1053
1221
Add fxorg, fyorg, fxorg for MDL molecule input only.
1054
1222
1055
[14/11/95] GSG molecule.c, molecule.h
1223
[14/11/95] GSG molecule.c, molecule.h
1056
1224
Add fxorg, fyorg, fxorg and list of bonds to atom database
1057
1225
for world and bond rotation.
1058
1059
[11/11/95] GSG multiple.c, multiple.h
1226
1227
[11/11/95] GSG multiple.c, multiple.h
1060
1228
New routine introduced with UCB mods to allow for
1061
1229
multiple molecules.
1062
1230
1063
[10/11/95] GSG tokens.c,tokens.h
1231
[10/11/95] GSG tokens.c,tokens.h
1064
1232
Add MoleculeTok.
1065
1066
[10/11/95] GSG repres.h
1233
1234
[10/11/95] GSG repres.h
1067
1235
Add flag for units to Monitors.
1068
1236
1069
[09/11/95] GSG command.c, command.h
1237
[09/11/95] GSG command.c, command.h
1070
1238
Add hooks for multiple molecules. Log background
1071
1239
status to allow default white print background.
1072
1240
Add molecule command.
1073
1241
1074
[09/11/95] GSG rasmol.c
1242
[09/11/95] GSG rasmol.c
1075
1243
Add initialisation for multiple molecules.
1076
1244
1077
1245
1078
1246
1079
1247
Changes from RasMol 2.7.1 to create RasMol 2.7.1.1:
1080
1248
1081
[21/01/01] FGR, HJB langsel.c, langsel_mac.c, mswin.c, applemac.c
1249
[21/01/01] FGR, HJB langsel.c, langsel_mac.c, mswin.c, applemac.c
1082
1250
Installed translations for Edit menu on mac and PC
1083
1251
provided by Fernando Gabriel Ranea.
1084
1252
1085
[17/01/01] FGR, HJB langsel.c, langsel_mac.c
1253
[17/01/01] FGR, HJB langsel.c, langsel_mac.c
1086
1254
Corrections to translations by Fernando Gabriel Ranea, installed
1087
1255
by HJB with revisions to menu bar accelerators.
1088
1256
1089
[12/01/01] HJB applemac.c
1257
[12/01/01] HJB applemac.c
1090
1258
Added include of langsel.h. Added routine ReWriteStr255 to rewrite
1091
1259
menu bar items in place and tostr255 to convert other menu items
1092
1260
strings to Pascal form for use in SetmenuItemText. Set up
1094
1262
bar. Note that the rewrite of the main menu bar is _very_ risky
1095
1263
and may not survive system changes.
1096
1264
1097
[12/01/01] HJB command.c
1265
[12/01/01] HJB command.c
1098
1266
Added include of langsel.h. Remove redundant ErrorMsg array and Err...
1099
1267
definitions. Change messages to reference MsgStrs. Add English and
1100
1268
Spanish as commands calling SwitchLang.
1101
1269
1102
[12/01/01] HJB infile.c
1270
[12/01/01] HJB infile.c
1103
1271
Fix coordinate typo in load of XYZ and Mol2 molecules.
1104
1272
1105
[12/01/01] HJB langsel.c, langsel_mac.c, langsel.h
1273
[12/01/01] HJB langsel.c, langsel_mac.c, langsel.h
1106
1274
New routines to carry multi-lingual translations. Many thanks to
1107
1275
Fernando Gabriel Ranea for the bulk of the Spanish translations,
1108
1276
and for creating the initial Spanish version of RasMol 2.7.1. Note
1109
1277
that langsel.c uses the ANSI character set, while lansel_mac.c uses the
1110
1278
Macintosh character set.
1111
1279
1112
[12/01/01] HJB molecule.c
1280
[12/01/01] HJB molecule.c
1113
1281
Added include of langsel.h. Changed messages to reference MsgStrs.
1114
1282
Refixed D2O misparse, which had been previously fixed. Mod had been
1115
1283
lost.
1116
1284
1117
[12/01/01] HJB mswin31.c
1285
[12/01/01] HJB mswin31.c
1118
1286
Added include of raswin.idm and langsel.h. Included partial update
1119
1287
to printer logic. Added ReDrawWindow as rewrite of menus with
1120
1288
ModifyMenu and RemoveMenu/AppendMenu calls.
1121
1289
1122
[12/01/01] HJB rasmac.c
1290
[12/01/01] HJB rasmac.c
1123
1291
Added include of langsel.h. Added SwitchLang(English) calls
1124
1292
for initialization to main routine.
1125
1293
1126
[12/01/01] HJB rasmol.c
1294
[12/01/01] HJB rasmol.c
1127
1295
Add fix for broken math routines by referencing atan2.
1128
1296
1129
[12/01/01] HJB rasmol.h
1297
[12/01/01] HJB rasmol.h
1130
1298
Added include of langsel.h. Added SwitchLang(English) calls
1131
1299
for initialization to main routine.
1132
1300
1133
[12/01/01] HJB raswin.c
1301
[12/01/01] HJB raswin.c
1134
1302
Added include of langsel.h. Changed font of command window to ANSI
1135
1303
character set. Changed most messages to reference MsgStrs. Add
1136
1304
SwitchLang(English) calls for initialization to WinMain.
1137
1305
1138
[12/01/01] HJB x11win.c
1306
[12/01/01] HJB x11win.c
1139
1307
Restructured MenuItem and BarItem to make .text, .pos and .len
1140
1308
indirect, so that they can be fetched from MsgStrs, MsgAuxl and
1141
1309
MsgLens. The .pos field is used to specify the character offset
1145
1313
simply as a call to ReSizeWindow. This is overkill, but appropriate
1146
1314
for these infrequent calls.
1147
1315
1148
[12/01/01] HJB tokens.h
1316
[12/01/01] HJB tokens.h
1149
1317
Added tokens EnglishTok and SpanishTok.
1150
1318
1151
[12/01/01] HJB graphics.h
1319
[12/01/01] HJB graphics.h
1152
1320
Added prototype of ReDrawWindow, a system-dependent call to be used
1153
1321
after updating menus on language changes.
1154
1322
1155
[12/01/01] HJB cmndline.c
1323
[12/01/01] HJB cmndline.c
1156
1324
Added include of langsel.h, changed prompts as follows:
1157
1325
1158
1326
"PDB file name:" MsgStrs[StrPrmtPDB]
1159
1327
"Image file name:" MsgStrs[StrPrmtImg]
1160
1328
"Molecule file name:" MsgStrs[StrPrmtMol]
1161
1162
1163
1164
[12/01/01] HJB tokens.c
1329
1330
1331
1332
[12/01/01] HJB tokens.c
1165
1333
Added the following tokens:
1166
1334
1167
1335
CADENA ChainTok
1168
1336
CADENAS ChainTok
1169
1337
DIBUJO CartoonTok
1187
1355
TODO AllTok
1188
1356
1189
1357
1190
[26/12/99] HJB mswin31.c
1358
[26/12/99] HJB mswin31.c
1191
1359
Do not reset Voxel Data for each chain.
1192
1360
1193
[02/10/99] HJB molecule.c
1361
[02/10/99] HJB molecule.c
1194
1362
Update printer logic.
1195
1363
1196
1364
Changes from RasMol 2.7.0 to RasMol 2.7.1.1 include:
1200
1368
* Upgrade of some of the Windows printer logic
1201
1369
* Correction of coordinate handling for Mol2 and XYZ coordinates
1202
1370
* Fix to the parsing of D2O.
1203
* The ability to automatically mark non bonded atoms in wireframe and
1204
stick displays. Our thanks to R. Curtis Haltiwanger for suggesting
1205
this change.
1206
* The ability to use a proportionally spaced font and to draw labels
1207
with heavier strokes. Our thanks to Eric Martz for suggesting this
1208
change.
1371
* The ability to automatically mark non bonded atoms in wireframe and stick displays.
1372
Our thanks to R. Curtis Haltiwanger for suggesting this change.
1373
* The ability to use a proportionally spaced font and to draw labels with heavier
1374
strokes. Our thanks to Eric Martz for suggesting this change.
1209
1375
* The ability to auto-recognize PDB vs. CIF and mmCIF datasets.
1210
* Extensive updating to the manual. Our thanks to William McClure,
1211
Margaret Wong, Eric Martz and Frances Bernstein.
1212
* Updating the canvas title with the PDB ID code and EXPDTA information,
1213
so models will be clearly distinguished from experimental data. Our
1214
thanks to Helen Berman for suggesting this change.
1376
* Extensive updating to the manual. Our thanks to William McClure, Margaret Wong, Eric
1377
Martz and Frances Bernstein.
1378
* Updating the canvas title with the PDB ID code and EXPDTA information, so models will
1379
be clearly distinguished from experimental data. Our thanks to Helen Berman for
1380
suggesting this change.
1215
1381
* The ability to report coordinates.
1216
1382
* Additions to the list of pre-defined colours.
1217
1383
* Improved accuracy of coordinates in pseudo-PDB output.
1219
1385
1220
1386
Changes from RasMol 2.7.0.1 to create RasMol 2.7.1:
1221
1387
1222
[15/07/99] HJB documentation
1388
[15/07/99] HJB documentation
1223
1389
Add Dunix binaries. Thanks to David Atkinson
1224
1390
1225
[06/07/99] HJB all
1391
[06/07/99] HJB all
1226
1392
Release 2.7.1
1227
1393
1228
[05/07/99] HJB documentation
1394
[05/07/99] HJB documentation
1229
1395
Cut-off date for Release 2.7.1 documentation changes.
1230
1396
1231
[22/06/99] HJB all source
1397
[22/06/99] HJB all source
1232
1398
Cut-off date for Release 2.7.1 code changes.
1233
1399
1234
[22/06/99] HJB command.c
1400
[22/06/99] HJB command.c
1235
1401
Save fact that a data file was loaded inline. Add
1236
1402
processing for star command, all new options for
1237
1403
bondmode [all | none | not bonded ]
1238
1404
1239
[22/06/99] HJB infile.c
1405
[22/06/99] HJB infile.c
1240
1406
Update DataFileFormat after autorecognition.
1241
1407
1242
[22/06/99] HJB molecule.h
1408
[22/06/99] HJB molecule.h
1243
1409
Add MarkAtoms to hold new bondmode flags.
1244
1410
1245
[22/06/99] HJB pixutils.c, render.c
1411
[22/06/99] HJB pixutils.c, render.c
1246
1412
Add code for new star command.
1247
1413
1248
[22/06/99] HJB script.c
1414
[22/06/99] HJB script.c
1249
1415
Add logic to write star command output. Report data
1250
1416
loaded as CIF or as inline correctly. Warn users
1251
1417
that inline data is not being written out. Check
1253
1419
Haltiwanger for suggesting marking non-bonded atoms
1254
1420
on wireframe displays.
1255
1421
1256
[22/06/99] HJB transfor.c
1422
[22/06/99] HJB transfor.c
1257
1423
Add code for new star command, new bondmode options.
1258
1424
1259
[18/06/99] HJB pixutils.h, pixutils.c
1425
[18/06/99] HJB pixutils.h, pixutils.c
1260
1426
Change name of DisplayString to DisplayRasString to
1261
1427
avoid a conflict with X libraries. Add FontWid array
1262
1428
to hold character widths (FontSize for FS, FontSize/4
1264
1430
write cylinders instead of lines when FontStroke is not
1265
1431
zero.
1266
1432
1267
[18/06/99] HJB render.c
1433
[18/06/99] HJB render.c
1268
1434
Change name of DisplayString to DisplayRasString to
1269
1435
avoid a conflict with X libraries.
1270
1436
1271
[18/06/99] HJB repres.c
1437
[18/06/99] HJB repres.c
1272
1438
When FonstStroke is non-zero, don't offset character
1273
1439
color by (ColourMask>>1), to allow room for color
1274
1440
adjustments in cylinder drawing.
1275
1441
1276
[18/06/99] HJB script.c
1442
[18/06/99] HJB script.c
1277
1443
Add logic to write PS flag for proportional spacing
1278
1444
on set fontsize, and logic to write set fontstroke n.
1279
1445
1280
[18/06/99] HJB tokens.c, tokens.h
1446
[18/06/99] HJB tokens.c, tokens.h
1281
1447
Add tokens for BlueTint (BlueTintTok), Brown (BrownTok),
1282
1448
FontStroke (FontStrokeTok), FS (FSTok), Gold (GoldTok),
1283
1449
Gray or Grey (GrayTok), GreenTint (GreenTintTok), HotPink
1286
1452
SeaGreen (SeaGreenTok), SkyBlue (SlyBlueTok),
1287
1453
YellowTint (YellowTintTok)
1288
1454
1289
[13/06/99] HJB command.c
1455
[13/06/99] HJB command.c
1290
1456
Change processing of load inline command to work from
1291
1457
the currently opened script, saving the file position.
1292
1458
Accept HEADER and DATA_... as commands in a script,
1293
1459
processing that line and all subsequent lines as a
1294
1460
data file, unless a prior load inline command was already
1295
done
1461
done
1296
1462
1297
[12/06/99] HJB infile.c
1463
[12/06/99] HJB infile.c
1298
1464
When processing a PDB file, test for DATA_... until
1299
1465
a non-comment, non-blank line is found. Revert
1300
1466
to CIF processing if DATA_... is found.
1301
1467
1302
[11/06/99] HJB infile.c
1303
In PDB format input extract EXPDTA for Info.technique.
1468
[11/06/99] HJB infile.c
1469
In PDB format input extract EXPDTA for Info.technique.
1304
1470
In CIF format input accept _audit_block_code for the
1305
1471
entry ID, _exptl.method, _diffrn_radiation.probe or
1306
1472
_diffrn_radiation_probe for Info.technique. Preserve
1308
1474
PDB output, report Info.technique in EXPDTA and reinsert
1309
1475
low-order bits for coordinates.
1310
1476
1311
[10/06/99] HJB abstree.c
1312
Add code to report coordinates for show selected cordinates
1477
[10/06/99] HJB abstree.c
1478
Add code to report coordinates for show selected cordinates
1313
1479
1314
[10/06/99] HJB command.c
1480
[10/06/99] HJB command.c
1315
1481
Recognize new commands, picking coordinates,
1316
1482
show selected cordinates. Update default title produced
1317
1483
by title command.
1318
1484
1319
[10/06/99] HJB molecule.h
1485
[10/06/99] HJB molecule.h
1320
1486
Add new Info fields for date and technique. Extend
1321
1487
identcode to 80 columns. Add CRD to Selection enum type.
1322
1488
Add prototype for ReviseTitle.
1323
1489
1324
[10/06/99] HJB render.h, render.c
1490
[10/06/99] HJB render.h, render.c
1325
1491
Add code to report coordinates for picking coordinates,
1326
1492
define PickCoord symbol.
1327
1493
1328
[10/06/99] HJB tokens.h, tokens.c
1494
[10/06/99] HJB tokens.h, tokens.c
1329
1495
Add code recognize COORD, COORDS, COORDINATE, COORDINATES for
1330
1496
new CoordTok, DATA_... for CIFDataTok, HEADER for HeaderTok
1331
1497
1332
[09/06/99] HJB molecule.c
1498
[09/06/99] HJB molecule.c
1333
1499
Put PDB entry ID and EXPDTA info into canvas title, report
1334
1500
EXPDTA data from Info.technique on reading file.
1335
1501
1336
[06/06/99] HJB infile.c
1502
[06/06/99] HJB infile.c
1337
1503
Restore the origin on PDB and other outputs.
1338
1504
1339
[06/06/99] HJB script.c
1505
[06/06/99] HJB script.c
1340
1506
Change script output to include centering and
1341
1507
change various coordinate outputs to restore
1342
1508
origins the z-axis orientation.
1343
1509
1344
[06/06/99] HJB command.c
1510
[06/06/99] HJB command.c
1345
1511
Add command centre [CenX,CenY,CenZ] to center by offsets
1346
1512
from centre of gravity.
1347
1348
[03/06/99] HJB render.c
1513
1514
[03/06/99] HJB render.c
1349
1515
Remove call to TranslateToCentre, hold centering
1350
1516
in CenX, CenY and CenZ, decoupled from dials,
1351
1517
add RFRotate to ReDrawFlag on centering. Thanks to
1352
1518
Bohdan Schneider for pointing out the problems with
1353
1519
centering.
1354
1520
1355
[03/06/99] HJB transfor.c
1521
[03/06/99] HJB transfor.c
1356
1522
Remove TranslateToCentre, remove processing of CenX,
1357
1523
CenY and CenZ from dial values, and put it into
1358
1524
computation of ptr->x,y,z
1359
1525
1360
1526
Changes after release of RasMol_2.7.0.1:
1361
1527
1362
[27/04/99] HJB README.html, Changelog.html, INSTALL.html, manual
1528
[27/04/99] HJB README.html, Changelog.html, INSTALL.html, manual
1363
1529
Add navigation links at top and bottom of each page.
1364
1530
Add links for gzipped versions of raswin.hlp, rasmol.hlp.
1365
1531
Thanks to E. Martz and Kjeld Olesen.
1366
1532
1367
[27/04/99] HJB INSTALL.html, manual
1533
[27/04/99] HJB INSTALL.html, manual
1368
1534
Replace empty copy of INSTALL.html in doc/, correct
1369
1535
embedded html in manual. Thanks to Kurt Giles.
1370
1536
1371
1537
Changes from RasMol_2.7.0 to create RasMol_2.7.0.1:
1372
1538
1373
1539
1374
[22/04/99] HJB
1540
[22/04/99] HJB
1375
1541
Announce RasMol 2.7.0.1 on pdb-l@rcsb.org,
1376
1542
rasmol@lists.umass.edu, mmciflist@ndbdev.rutgers.edu
1377
1543
1378
[11/04/99] HJB *.c, *.h
1544
[11/04/99] HJB *.c, *.h
1379
1545
Update all comment blocks for new version and date
1380
1546
1381
[11/04/99] HJB abstree.h
1547
[11/04/99] HJB abstree.h
1382
1548
Realign Pred... to agree with ...Tok to correct
1383
1549
misaligned introduced by HJB (not AM) during merge of 2.6x1
1384
1550
into 2.7.0.
1385
1551
1386
[11/04/99] HJB tokens.h
1552
[11/04/99] HJB tokens.h
1387
1553
Fix definition of IsPredTok
1388
1554
1389
[09/04/99] HJB molecule,h
1555
[09/04/99] HJB molecule,h
1390
1556
Make residue identification case-insensitive.
1391
1557
1392
1558
1393
1559
1394
Changes from RasMol_2.6.4, RasMol2.6x1 and RasMol_2.6_CIF.2 to create
1395
RasMol_2.7.0:
1560
Changes from RasMol_2.6.4, RasMol2.6x1 and RasMol_2.6_CIF.2 to create RasMol_2.7.0:
1396
1561
1397
[30/03/99] HJB all
1562
[30/03/99] HJB all
1398
1563
Cleanup and release of version 2.7.0
1399
1564
1400
[23/03/99] HJB abstree.c
1565
[23/03/99] HJB abstree.c
1401
1566
Add code to select on alternate conformers. Increase
1402
1567
accuracy of torsion angle calculation.
1403
1568
1404
[23/03/99] HJB command.c, command.h
1569
[23/03/99] HJB command.c, command.h
1405
1570
Make InitHelpFile generally available, change to
1406
1571
WriteString for reporting CisBondCutOff for use on mac,
1407
1572
report models on show selected.
1408
1573
1409
[23/03/99] HJB rasmol.c, raswin.c, rasmac.c
1574
[23/03/99] HJB rasmol.c, raswin.c, rasmac.c
1410
1575
Add suggestion for help notice to initial text lines.
1411
1576
1412
[23/03/99] HJB script.c
1577
[23/03/99] HJB script.c
1413
1578
In order to support mac introduce WriteBuffer and
1414
1579
change all fprintf(outFile, ... to WriteBuffer, provide
1415
1580
code from fisipl for Ramachandran printer plot. Handle
1416
1581
signs of torsion angles. Thanks to F. C. Bernstein.
1417
1582
1418
[23/03/99] HJB tokens.h, tokens.c
1583
[23/03/99] HJB tokens.h, tokens.c
1419
1584
Add RamPrintTok, RPP, RDF, etc., hook POVRAY3 to the
1420
1585
new POVray code.
1421
1586
1422
[20/03/99] HJB *.h, *.c
1587
[20/03/99] HJB *.h, *.c
1423
1588
In general, the RasMol_2.6_CIF.2 version was used as a base
1424
1589
and upgraded with the RasMol_2.6.4 changes. The exceptions
1425
1590
are below
1426
1591
1427
[20/03/99] HJB infile.c
1592
[20/03/99] HJB infile.c
1428
1593
Cell parameters are read with the double routine ReadDecValue
1429
1594
from 2.6_CIF.2, rather than ReadValue2 from 2.6.4
1430
1595
1432
1597
1433
1598
Changes from RasMol_2.6 to create RasMol_2.6x1:
1434
1599
1435
[15/2/98] AM abstree.c, abstree.h
1600
[15/2/98] AM abstree.c, abstree.h
1436
1601
Add PredCisBond, DescribeObj, CalcPhiAngle, CalcPsiAngle,
1437
1602
CalcOmegaAngle, shift torsion angle calculations 180
1438
1603
degrees.
1439
1604
1440
[15/2/98] AM command.c
1605
[15/2/98] AM command.c
1441
1606
Add FindCisBonds, CisBondCutOff, show of selected chains,
1442
1607
groups, atoms, show and write of phi-psi angles
1443
1608
1444
[15/2/98] AM molecule.h, molecule.c
1609
[15/2/98] AM molecule.h, molecule.c
1445
1610
Add CIS bond logic
1446
1611
1447
[15/2/98] AM rasmol.h, rasmol.c
1612
[15/2/98] AM rasmol.h, rasmol.c
1448
1613
Add USE_FD_SET_TYPE option
1449
1614
1450
[15/2/98] AM script.h, script.c
1615
[15/2/98] AM script.h, script.c
1451
1616
Add WritePhiPsiAngles, code for POV-Ray version 3
1452
1453
1454
[15/2/98] AM tokens.h
1617
1618
1619
[15/2/98] AM tokens.h
1455
1620
Add CisBondedTok, RamachanTok, CisAngleTok, PhiPsiTok,
1456
1621
define PHIPSI, CISANGLE, RAMACHAN, CISBONDED
1457
1622
1458
1623
Changes from RasMol_2.6 to create RasMol_2.6.4:
1459
1624
1460
[8/2/99] RS command.c, rasmol.c, scripts.c, rastxt.c, raswin.c
1625
[8/2/99] RS command.c, rasmol.c, scripts.c, rastxt.c, raswin.c
1461
1626
rasmac.c
1462
1627
Final fixup and release of version 2.6.4
1463
1628
1464
[27/12/98] RS *.h, *.c
1629
[27/12/98] RS *.h, *.c
1465
1630
Remove all non-ANSI-C prototypes and ensure use of ( void )
1466
1631
for empty argument lists. Upgrade all procedure delcarations.
1467
1632
Convert to use of MSWIN.
1468
1633
1469
[27/12/98] RS abstree.c
1634
[27/12/98] RS abstree.c
1470
1635
Redo torsion angel calculation.
1471
1472
1473
[27/12/98] RS applemac.c
1636
1637
1638
[27/12/98] RS applemac.c
1474
1639
Convert to Apple's new routine names
1475
1640
1476
[27/12/98] RS cmndline.c, cmndline.h
1641
[27/12/98] RS cmndline.c, cmndline.h
1477
1642
New routine for mouse, keyboard, dials
1478
1643
1479
[27/12/98] RS command.c, command.h
1644
[27/12/98] RS command.c, command.h
1480
1645
Move routines for mouse, keyboard, dials to cmndline.c.
1481
1646
Redo ParseColour. Reorganize command parsing
1482
1647
1483
[27/12/98] RS infile.c
1648
[27/12/98] RS infile.c
1484
1649
Change references to MMIO to MMIOLIB. Pass fp and buffer
1485
1650
to FetchRecord as argument. Add ReadValue2, ProcessPDBBond,
1486
1651
ProcessPDBUnitCell. Fix recognition of END. Use
1487
1652
InvalidateCmndline and UnusedArgument. Write MODEL and
1488
1653
ENDMDL records when appropriate
1489
1490
[27/12/98] RS molecule.c
1654
1655
[27/12/98] RS molecule.c
1491
1656
Reorganize FindResNo as a character-oriented search tree
1492
1657
Add Cache.
1493
1658
1494
[27/12/98] RS rasmac.c
1659
[27/12/98] RS rasmac.c
1495
1660
Convert to Apple's new routine names
1496
1661
1497
[27/12/98] RS rastxt.c
1662
[27/12/98] RS rastxt.c
1498
1663
New text-only main program
1499
1664
1500
[27/12/98] RS repres.c
1665
[27/12/98] RS repres.c
1501
1666
Add LabelTermnii
1502
1667
1503
[27/12/98] RS tranfor.c
1668
[27/12/98] RS tranfor.c
1504
1669
Add TranslateToCentre
1505
1670
1506
[27/12/98] RS transfor.h
1671
[27/12/98] RS transfor.h
1507
1672
Reorganize the logic defining DefaultAmbient, making
1508
1673
the default value 0.4 instead of 0.6, except for E&S, which
1509
1674
is still .05.
1510
1675
1511
[27/12/98] RS tokens.c
1676
[27/12/98] RS tokens.c
1512
1677
New routine for character-oriented search tree for tokens.
1513
1514
[01/08/97] RS infile.c
1678
1679
[01/08/97] RS infile.c
1515
1680
Decreased the maximum valid alpha carbon to alpha carbon
1516
1681
distance to 4.2 Angstroms from 7.0 Angstroms. Thanks to
1517
1682
Kostas Sfyrakis and Harren Jhoti.
1518
1683
1519
[15/04/97] RS molecule.c repres.c
1684
[15/04/97] RS molecule.c repres.c
1520
1685
Fixed a bizarre feature in the OpenVMS compiler that complained
1521
1686
about "a=*b" as "=*" operator is an obsoltete form and may not
1522
1687
be portable. Special thanks to Remington Stone.
1523
1688
1524
[28/11/96] RS rasmol.h rasmol.c
1689
[28/11/96] RS rasmol.h rasmol.c
1525
1690
Several minor fixes to compile RasMol under VMS. Special
1526
1691
thanks to Adam Ralph (and CCP4).
1527
1692
1528
1693
1529
1694
Changes from RasMol_2.6_CIF(Rev 1) to create RasMol_2.6_CIF(Rev 2):
1530
1695
1531
[24/2/99] HJB Release of RasMol_2.6_CIF(Rev 2) at
1696
[24/2/99] HJB Release of RasMol_2.6_CIF(Rev 2) at
1532
1697
http://www/bernstein-plus-sons.com/software/rasmol
1533
1698
and announce to mailing lists.
1534
1699
1535
[21/2/99] HJB cif.h
1700
[21/2/99] HJB cif.h
1536
1701
Add prototypes of cif_make_handle, cif_read_file,
1537
1702
cif_make_file, cif_save_character to avoid compiler warnings
1538
1703
1539
[21/2/99] HJB cif_ctonum.c
1704
[21/2/99] HJB cif_ctonum.c
1540
1705
Remove unneeded values.h
1541
1706
1542
[21/2/99] HJB cif_ctonum.h
1707
[21/2/99] HJB cif_ctonum.h
1543
1708
Correct prototype
1544
1709
1545
[21/2/99] HJB infile.c
1710
[21/2/99] HJB infile.c
1546
1711
Add cif_ctonum.h, define LoadCIFMolecule prototype,
1547
1712
initialize ch, add return to avoid compiler warnings.
1548
1713
1549
[21/2/99] HJB abstree.c, cif.c, cif_ctonum.c, command.c,
1714
[21/2/99] HJB abstree.c, cif.c, cif_ctonum.c, command.c,
1550
1715
infile.c, molecule.c
1551
1716
Use string_case.h instead of <strings.h> for IBMPC,
1552
1717
VMS and APPLEMAC.
1553
1718
1554
[21/2/99] HJB rasmol.h
1719
[21/2/99] HJB rasmol.h
1555
1720
Update version, add some definitions from R. Sayle's
1556
1721
2.6.4 in preparation for 2.7.0.
1557
1722
1558
[21/2/99] HJB rasmac.c, rasmol.c, raswin.c
1723
[21/2/99] HJB rasmac.c, rasmol.c, raswin.c
1559
1724
Update reported date on startup.
1560
1725
1561
[21/2/99] HJB render.c
1726
[21/2/99] HJB render.c
1562
1727
Add cif_fract.h to avoid compiler warnings.
1563
1728
1564
[21/2/99] HJB string_case.c
1729
[21/2/99] HJB string_case.c
1565
1730
Replace garbled version, provide string_case.h.
1566
1731
1567
[21/2/99] HJB script.c
1732
[21/2/99] HJB script.c
1568
1733
Initialize first, last, radius, to avoid compiler warnings
1569
1734
1570
[21/2/99] HJB transfor.c
1735
[21/2/99] HJB transfor.c
1571
1736
Initialize min and max to avoid compiler warnings.
1572
1737
1573
[10/1/99] HJB Release of RasMol_2.6_CIF(Rev 1) at
1738
[10/1/99] HJB Release of RasMol_2.6_CIF(Rev 1) at
1574
1739
http://www.bernstein-plus-sons.com/software/rasmol
1575
1740
and announce to mmCIF mailing list.
1576
1741
1577
[9/1/99] HJB cif.c
1578
Change toupper calls to ToUpper calls.
1742
[9/1/99] HJB cif.c
1743
Change toupper calls to ToUpper calls.
1579
1744
1580
[8/1/99] HJB command.c
1745
[8/1/99] HJB command.c
1581
1746
Add argument to CreateMoleculeBonds to force zapping
1582
on connect.
1747
on connect.
1583
1748
1584
[8/1/99] HJB infile.c
1749
[8/1/99] HJB infile.c
1585
1750
Log requested bonds which cannot be made in NullBonds
1586
1751
and report to users, add RightJustify to right-justify
1587
1752
residue names, recognize _atom_site_disorder_group
1588
1753
for small molecule alternate conformerse, recognize bonds
1589
1754
which don't have either atom names or atom numbers.
1590
1755
1591
[8/1/99] HJB molecule.c
1756
[8/1/99] HJB molecule.c
1592
1757
Add argument to CreateMoleculeBonds to force zapping
1593
on connect.
1758
on connect.
1594
1759
1595
[8/1/99] HJB molecule.h
1760
[8/1/99] HJB molecule.h
1596
1761
Add argument to CreateMoleculeBonds to force zapping
1597
1762
on connect, add NullBonds to log requested bonds which
1598
cannot be made.
1763
cannot be made.
1599
1764
1600
[8/1/99] HJB mswin31.c
1765
[8/1/99] HJB mswin31.c
1601
1766
Use VERSION to construct window title.
1602
1767
1603
[8/1/99] HJB outfile.c
1768
[8/1/99] HJB outfile.c
1604
1769
Use VERSION to construct Postscript output file header.
1605
1770
1606
[8/1/99] HJB rasmac.c
1607
Use VERSION to report version on startup.
1608
1609
[8/1/99] HJB rasmol.c
1610
Use VERSION to report version on startup.
1611
1612
[8/1/99] HJB raswin.c
1613
Use VERSION to report version on startup.
1614
1615
[8/1/99] HJB script.c
1771
[8/1/99] HJB rasmac.c
1772
Use VERSION to report version on startup.
1773
1774
[8/1/99] HJB rasmol.c
1775
Use VERSION to report version on startup.
1776
1777
[8/1/99] HJB raswin.c
1778
Use VERSION to report version on startup.
1779
1780
[8/1/99] HJB script.c
1616
1781
Use VERSION to construct various output file headers.
1617
1782
1618
[8/1/99] HJB x11win.c
1783
[8/1/99] HJB x11win.c
1619
1784
Use VERSION to construct window title.
1620
1785
1621
1786
1622
1787
Changes from RasMol_2.6 to create RasMol_2.6_CIF:
1623
1788
1624
1789
1625
[22/12/98] HJB Preliminary release of RasMol_2.6_CIF at
1790
[22/12/98] HJB Preliminary release of RasMol_2.6_CIF at
1626
1791
http://www.bernstein-plus-sons.com/software/rasmol
1627
1792
1628
[19/12/98] HJB command.c
1793
[19/12/98] HJB command.c
1629
1794
correct handling of internal help files under windows,
1630
1795
and allow for unix help files on a mac.
1631
1796
1632
[18/12/98] HJB Makefile.in, Imakefile
1797
[18/12/98] HJB Makefile.in, Imakefile
1633
1798
Update for CIF support.
1634
1799
1635
[09/12/98] HJB infile.c
1800
[09/12/98] HJB infile.c
1636
1801
Cummulative changes for fractional coordinates,
1637
CIF.
1802
CIF.
1638
1803
1639
[09/12/98] HJB command.c
1804
[09/12/98] HJB command.c
1640
1805
Changes for alt, model labels, colour schemes,
1641
CIF.
1642
1643
[09/12/98] HJB molecule.h
1644
Cummulative changes for fractional coordinates,
1645
new colour schemes, CIF.
1646
1647
[09/12/98] HJB molecule.c
1648
Cummulative changes for fractional coordinates,
1649
new colour schemes, CIF.
1650
[09/12/98] HJB x11win.c
1806
CIF.
1807
1808
[09/12/98] HJB molecule.h
1809
Cummulative changes for fractional coordinates,
1810
new colour schemes, CIF.
1811
1812
[09/12/98] HJB molecule.c
1813
Cummulative changes for fractional coordinates,
1814
new colour schemes, CIF.
1815
[09/12/98] HJB x11win.c
1651
1816
Update comments, menus and version text.
1652
1817
1653
[09/12/98] HJB mswin31.c
1654
Update comments, output file commentary.
1655
1656
[09/12/98] HJB outfile.c
1657
Update comments, output file commentary.
1658
1659
[09/12/98] HJB script.c
1660
Update comments, output file commentary.
1661
1662
[09/12/98] HJB rasmol.c
1663
Update comments, output file commentary.
1664
1665
[04/12/98] HJB pixutils.c
1818
[09/12/98] HJB mswin31.c
1819
Update comments, output file commentary.
1820
1821
[09/12/98] HJB outfile.c
1822
Update comments, output file commentary.
1823
1824
[09/12/98] HJB script.c
1825
Update comments, output file commentary.
1826
1827
[09/12/98] HJB rasmol.c
1828
Update comments, output file commentary.
1829
1830
[04/12/98] HJB pixutils.c
1666
1831
Update comments, code to stripe bonds for alternate
1667
conformers.
1832
conformers.
1668
1833
1669
[04/12/98] HJB pixutils.h
1834
[04/12/98] HJB pixutils.h
1670
1835
Update comments, protytpes to stripe bonds for alternate
1671
1836
conformers.
1672
1837
1673
[04/12/98] HJB rasmac.c
1674
Update comments, adjust code for current Metrowerks
1675
compiler.
1676
1677
[04/12/98] HJB raswin.c
1678
Update comments, adjust code for current Metrowerks
1679
compiler.
1680
1681
[04/12/98] HJB tokens.h
1838
[04/12/98] HJB rasmac.c
1839
Update comments, adjust code for current Metrowerks
1840
compiler.
1841
1842
[04/12/98] HJB raswin.c
1843
Update comments, adjust code for current Metrowerks
1844
compiler.
1845
1846
[04/12/98] HJB tokens.h
1682
1847
Update comments, tokens for alt, model colours.
1683
1848
1684
[04/12/98] HJB transfor.c
1849
[04/12/98] HJB transfor.c
1685
1850
Update comments, add code for alt, model colours.
1686
1687
[04/12/98] HJB transfor.h
1851
1852
[04/12/98] HJB transfor.h
1688
1853
Update comments, prototypes for alt, model colours.
1689
1854
1690
[23/11/98] HJB abstree.c
1855
[23/11/98] HJB abstree.c
1691
1856
Add code for %A, %M specifiers, divide u/l case.
1692
1857
1693
[22/11/98] HJB cif_fract.c
1858
[22/11/98] HJB cif_fract.c
1694
1859
New routine, derived from cif2pdb by H.J. Bernstein
1695
and F. C. Bernstein.
1860
and F. C. Bernstein.
1696
1861
1697
[22/11/98] HJB cif_fract.h.
1862
[22/11/98] HJB cif_fract.h.
1698
1863
New header for cif_fact.c.
1699
1864
1700
[22/11/98] HJB cif_stx.c
1865
[22/11/98] HJB cif_stx.c
1701
1866
New routine, derived from P. Ellis CBFlib parser.
1702
1867
1703
[23/11/98] HJB render.c
1704
Update comments, add code to stripe bonds for alternate
1705
conformers.
1706
1707
[23/11/98] HJB repres.c
1708
Update comments, add code to stripe bonds for alternate
1709
conformers.
1710
1711
[09/09/98] HJB cif_ctonum.c
1868
[23/11/98] HJB render.c
1869
Update comments, add code to stripe bonds for alternate
1870
conformers.
1871
1872
[23/11/98] HJB repres.c
1873
Update comments, add code to stripe bonds for alternate
1874
conformers.
1875
1876
[09/09/98] HJB cif_ctonum.c
1712
1877
New routine, derived from ciftbx by S. R. Hall
1713
and H. J. Bernstein.
1878
and H. J. Bernstein.
1714
1879
1715
[09/09/98] HJB cif_ctonum.h
1880
[09/09/98] HJB cif_ctonum.h
1716
1881
New header for cif_ctonum.c.
1717
1882
1718
[18/08/98] HJB cif.h
1883
[18/08/98] HJB cif.h
1719
1884
New header for cif.c, derived from CBFlib by P. Ellis
1720
1885
and H. J. Bernstein.
1721
1722
[18/08/98] HJB cif.c
1886
1887
[18/08/98] HJB cif.c
1723
1888
New routine derived from CBFlib by P. Ellis and
1724
1889
H. J. Bernstein.
1725
1726
[14/08/98] HJB rasmol.c
1890
1891
[14/08/98] HJB rasmol.c
1727
1892
Added hooks for termio for Linux. These changes
1728
1893
are similar to, but not identical to the FreeBSD hooks.
1729
1894
See the linux conditionals. -- H. J. Bernstein
1732
1897
1733
1898
The complete version 2 change history is in the directory ChangeLog
1734
1899
1735
----------------------------------------------------------------------
1736
1737
| OpenRasMol | Copying and Distribution | Contents | Installation Instructions |
1738
| Changes | Things To Do | Introduction | Source Code and Binaries |
1739
| RasMol Manual | Spanish Translation of RasMol Manual | Italian Translation of
1740
RasMol Help File |
1741
| Donate to Support RasMol | Release README | Register your RasMol |
1742
1743
----------------------------------------------------------------------
1744
1745
Updated 20 March 2008.
1900
-----------------------------------------------------------------------------------------
1901
1902
| OpenRasMol | Copying and Distribution | Contents | Installation Instructions |
1903
| Changes | Things To Do | Introduction | Source Code and Binaries |
1904
| RasMol Manual | Spanish Translation of RasMol Manual | Italian Translation of RasMol Help
1905
File |
1906
| Donate to Support RasMol | Release README | Register your RasMol |
1907
1908
-----------------------------------------------------------------------------------------
1909
1910
Updated 19 July 2009.
1746
1911
Herbert J. Bernstein
1747
1912
Bernstein + Sons, 5 Brewster Lane, Bellport, NY 11713-2803, USA
1748
1913
yaya@bernstein-plus-sons.com
1914
1915
References
1916
1917
Visible links
1918
. http://www.iucr.org/iucr-top/welcome.html
1919
. http://www.iucr.org/iucr-top/cif/home.html
1920
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html
1921
. http://www.openrasmol.org/
1922
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html#Copying
1923
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html#Contents
1924
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/INSTALL.html
1925
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/ChangeLog.html
1926
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/TODO.html
1927
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html#Introduction
1928
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html#CodeAndBinaries
1929
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/doc/rasmol.html
1930
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/doc/esrasmol27.html
1931
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/doc/itrasmol.hlp
1932
. http://www.rasmol.org/donate.shtml
1933
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html
1934
. http://www.rasmol.org/register.shtml
1935
. http://www.rasmol.org/software/RasMol_Latest_Windows_Installer.exe
1936
. http://www.rasmol.org/software/RasMol_Latest.tar.gz
1937
. http://www.rasmol.org/software/RasMol_Latest_Manual.html
1938
. http://www.rasmol.org/donate.shtml
1939
. http://www.rasmol.org/register.shtml
1940
. http://www.rasmol.org/software/RasMol_2.7.5_Windows_Installer.exe
1941
. http://www.rasmol.org/software/RasMol_2.7.5.tar.gz
1942
. http://www.rasmol.org/software/RasMol_2.7.5_Manual.html
1943
. http://www.rasmol.org/donate.shtml
1944
. http://www.rasmol.org/register.shtml
1945
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/doc/NOTICE.html
1946
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/ChangeLog/
1947
. http://www.openrasmol.org/
1948
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html#Copying
1949
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html#Contents
1950
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/INSTALL.html
1951
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/ChangeLog.html
1952
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/TODO.html
1953
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html#Introduction
1954
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html#CodeAndBinaries
1955
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/doc/rasmol.html
1956
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/doc/esrasmol27.html
1957
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/doc/itrasmol.hlp
1958
. http://www.rasmol.org/donate.shtml
1959
. file:///usr/public_ftp/yaya/software/rasmol-2.7.5-17Jul09/README.html
1960
. http://www.rasmol.org/register.shtml
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