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Viewing changes to test/primer_check_input

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2006-09-28 20:18:54 UTC
  • Revision ID: james.westby@ubuntu.com-20060928201854-45pwapz5e3a6d684
Tags: upstream-1.0b
Import upstream version 1.0b

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Lines of Context:
test/primer_check_input
 
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PRIMER_SEQUENCE_ID=00
 
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PRIMER_MAX_POLY_X=0
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=0
 
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PRIMER_EXPLAIN_FLAG=1
 
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PRIMER_PRODUCT_SIZE_RANGE=50-100
 
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PRIMER_MIN_TM=0.0
 
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PRIMER_MAX_TM=100.0
 
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PRIMER_MIN_SIZE=25
 
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PRIMER_MAX_SIZE=25
 
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PRIMER_INTERNAL_OLIGO_MIN_SIZE=25
 
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PRIMER_INTERNAL_OLIGO_MAX_SIZE=25
 
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PRIMER_INTERNAL_OLIGO_OPT_SIZE=25
 
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PRIMER_OPT_SIZE=25
 
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PRIMER_MAX_GC=100
 
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PRIMER_MIN_GC=0
 
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PRIMER_SELF_END=100
 
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PRIMER_SELF_ANY=100
 
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PRIMER_INTERNAL_OLIGO_SELF_ANY=100
 
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PRIMER_INTERNAL_OLIGO_SELF_END=100 
 
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PRIMER_INTERNAL_OLIGO_MAX_TM=100
 
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PRIMER_INTERNAL_OLIGO_MIN_TM=30
 
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PRIMER_INTERNAL_OLIGO_MAX_GC=100
 
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PRIMER_INTERNAL_OLIGO_MIN_GC=0
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=CACGTCATCTCATCAAATTTGATTG
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=
 
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PRIMER_SEQUENCE_ID=01
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=CACGTCATCTCATCAAATTTGATTG
 
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PRIMER_RIGHT_INPUT=GAATTGTTTGGAAATGACAGTGAGT
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=
 
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PRIMER_SEQUENCE_ID=02
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=CACGTCATCTCATCAAATTTGATTG
 
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PRIMER_PICK_INTERNAL_OLIGO=0
 
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=
 
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PRIMER_SEQUENCE_ID=03
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_RIGHT_INPUT=GAATTGTTTGGAAATGACAGTGAGT
 
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PRIMER_INTERNAL_OLIGO_INPUT=ACGTACGTACGTTGCAGTCGACGCA
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=
 
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PRIMER_SEQUENCE_ID=04
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_INTERNAL_OLIGO_INPUT=ACGTACGTACGTTGCAGTCGACGCA
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=
 
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PRIMER_SEQUENCE_ID=05
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=CACGTCATCTCATCAAATTTGATTG
 
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PRIMER_INTERNAL_OLIGO_INPUT=ACGTACGTACGTTGCAGTCGACGCA
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=
 
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PRIMER_SEQUENCE_ID=06
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=CACGTCATCTCATCAAATTTGATTG
 
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PRIMER_RIGHT_INPUT=GAATTGTTTGGAAATGACAGTGAGT
 
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PRIMER_INTERNAL_OLIGO_INPUT=ACGTACGTACGTTGCAGTCGACGCA
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=
 
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PRIMER_SEQUENCE_ID=07
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_RIGHT_INPUT=TGCGTCGACTGCAACGTACGTACGT
 
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PRIMER_PICK_INTERNAL_OLIGO=0
 
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=
 
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PRIMER_SEQUENCE_ID=08
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=CACGTCATCTCATCAAATTTGATTG
 
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PRIMER_RIGHT_INPUT=TGCGTCGACTGCAACGTACGTACGT
 
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PRIMER_PICK_INTERNAL_OLIGO=0
 
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=
 
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PRIMER_SEQUENCE_ID=09
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_RIGHT_INPUT=TGCGTCGACTGCAACGTACGTACGT
 
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PRIMER_INTERNAL_OLIGO_INPUT=ACGTACGTACGTTGCAGTCGACGCA
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=
 
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PRIMER_SEQUENCE_ID=10
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=CACGTCATCTCATCAAATTTGATTG
 
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PRIMER_RIGHT_INPUT=TGCGTCGACTGCAACGTACGTACGT
 
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PRIMER_INTERNAL_OLIGO_INPUT=ACGTACGTACGTTGCAGTCGACGCA
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=
 
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PRIMER_SEQUENCE_ID=11
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=CACGTCATCTCATCAATTTGATTG
 
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PRIMER_RIGHT_INPUT=GAATTGTTTGGAAATGACAGTGAGT
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=
 
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PRIMER_SEQUENCE_ID=12
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=CACGTCATCTCATCAAATTTGATTG
 
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PRIMER_RIGHT_INPUT=TGCGTCGACTGCAACGTACGTACGT
 
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PRIMER_INTERNAL_OLIGO_INPUT=ACGTACGTACGTTGCAGTCGACGCA
 
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PRIMER_PICK_INTERNAL_OLIGO=0
 
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=
 
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PRIMER_SEQUENCE_ID=13
 
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SEQUENCE=nncacgtcaTCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=cacgtcatctcatcaaatttgattg
 
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PRIMER_RIGHT_INPUT=gaattgtttggaaatgacagtgagt
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=
 
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PRIMER_SEQUENCE_ID=14
 
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SEQUENCE=NNCACGTCATCTCATCAAATTTGATTGNNNACGTACGTACGTTGCAGTCGACGCANNACTCACTGTCATTTCCAAACAATTCNN
 
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PRIMER_LEFT_INPUT=CACGTCATctcatcaaattTGATTG
 
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PRIMER_RIGHT_INPUT=gaattgtttggaAATGACAGTGAGT
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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=