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Viewing changes to test/primer_mispriming_boundary1_input

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2006-09-28 20:18:54 UTC
  • Revision ID: james.westby@ubuntu.com-20060928201854-45pwapz5e3a6d684
Tags: upstream-1.0b
Import upstream version 1.0b

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Lines of Context:
test/primer_mispriming_boundary1_input
 
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PRIMER_SEQUENCE_ID=pair_1
 
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PRIMER_EXPLAIN_FLAG=1
 
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PRIMER_MISPRIMING_LIBRARY=primer_repeat_boundary1_lib
 
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PRIMER_INTERNAL_OLIGO_MISHYB_LIBRARY=primer_repeat_boundary1_lib
 
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SEQUENCE=GCGCGCGCGCGCGCGCGCGCTATATATATATATATATATATATATATATATTATATATATATATATATATATTATATATATATATATATATATTAATATATATATATATATGCGCGCGCGCGCGCGCGCGCATATATATATATATATATATATATATTATAACGCGCGGCGCGCGCGCGCGC
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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PRIMER_MAX_MISPRIMING=0
 
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PRIMER_INTERNAL_OLIGO_MAX_MISHYB=0
 
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PRIMER_SELF_ANY=25
 
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PRIMER_SELF_END=25
 
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PRIMER_INTERNAL_OLIGO_SELF_ANY=25
 
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PRIMER_INTERNAL_OLIGO_SELF_END=25
 
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PRIMER_INTERNAL_OLIGO_MAX_TM=100
 
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PRIMER_INTERNAL_OLIGO_MIN_SIZE=20
 
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PRIMER_INTERNAL_OLIGO_MIN_TM=0
 
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PRIMER_INTERNAL_OLIGO_MAX_SIZE=20
 
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PRIMER_MIN_GC=0
 
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PRIMER_MAX_GC=100
 
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PRIMER_INTERNAL_OLIGO_MIN_GC=0
 
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PRIMER_INTERNAL_OLIGO_MAX_GC=100
 
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PRIMER_MAX_SIZE=20
 
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PRIMER_MIN_SIZE=20
 
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PRIMER_OPT_SIZE=20
 
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PRIMER_MAX_TM=100
 
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PRIMER_MIN_TM=0
 
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PRIMER_OPT_TM=60
 
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=
 
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PRIMER_SEQUENCE_ID=pair_0
 
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COMMENT="Should fail because of high repeat similarity"
 
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SEQUENCE=TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
 
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=
 
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PRIMER_SEQUENCE_ID=pair_1
 
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SEQUENCE=GCGCGCGCGCGCGCGCGCGCTATATATATATATATATATATATATATATATTATATATATATATATATATATTATATATATATATATATATATTAATATATATATATATATGCGCGCGCGCGCGCGCGCGCATATATATATATATATATATATATATTATAACGCGCGGCGCGCGCGCGCGC
 
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PRIMER_PAIR_MAX_MISPRIMING=0
 
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PRIMER_MAX_MISPRIMING=20
 
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=