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Viewing changes to test/primer_must_use_input

  • Committer: Bazaar Package Importer
  • Author(s): Charles Plessy
  • Date: 2006-09-28 20:18:54 UTC
  • Revision ID: james.westby@ubuntu.com-20060928201854-45pwapz5e3a6d684
Tags: upstream-1.0b
Import upstream version 1.0b

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Lines of Context:
test/primer_must_use_input
 
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PRIMER_SEQUENCE_ID=anyway_1
 
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PRIMER_EXPLAIN_FLAG=1
 
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PRIMER_SELF_ANY=12
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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PRIMER_NUM_RETURN=1
 
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PRIMER_PICK_ANYWAY=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122
 
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=
 
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PRIMER_SEQUENCE_ID=high_tm
 
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PRIMER_SELF_ANY=12
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_MAX_TM=60
 
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=
 
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PRIMER_SEQUENCE_ID=high_tm_and_self_any
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_MAX_TM=60
 
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=
 
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PRIMER_SEQUENCE_ID=high_tm_and_self_any_and_target
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=20,122
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_MAX_TM=60
 
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=
 
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PRIMER_SEQUENCE_ID=high_tm_and_self_any_and_excl_region
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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EXCLUDED_REGION=20,1
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_MAX_TM=60
 
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=
 
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PRIMER_SEQUENCE_ID=high_tm_and_self_any_and_incl_region
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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INCLUDED_REGION=1,160
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_MAX_TM=60
 
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=
 
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PRIMER_SEQUENCE_ID=left_high_tm_and_self_any_and_right
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_RIGHT_INPUT=CAGTGTGTACATGGCGGC
 
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PRIMER_MAX_TM=60
 
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=
 
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PRIMER_SEQUENCE_ID=left_high_tm_and_self_any_and_right_bad_gc
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_RIGHT_INPUT=CAGTGTGTACATGGCGGC
 
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PRIMER_MAX_TM=60
 
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PRIMER_MAX_GC=60
 
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=
 
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PRIMER_SEQUENCE_ID=left_high_tm_and_self_any_and_right_bad_gc_and_target
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122 143,1
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_RIGHT_INPUT=CAGTGTGTACATGGCGGC
 
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PRIMER_MAX_TM=60
 
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PRIMER_MAX_GC=60
 
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=
 
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PRIMER_SEQUENCE_ID=internal_too_short
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122 143,1
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_RIGHT_INPUT=CAGTGTGTACATGGCGGC
 
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PRIMER_INTERNAL_OLIGO_INPUT=gcgtacgatccat
 
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PRIMER_MAX_TM=60
 
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PRIMER_MAX_GC=60
 
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=
 
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PRIMER_SEQUENCE_ID=internal_ok
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122 143,1
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_RIGHT_INPUT=CAGTGTGTACATGGCGGC
 
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PRIMER_INTERNAL_OLIGO_INPUT=gcgtacgatccatgctagc
 
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PRIMER_MAX_TM=60
 
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PRIMER_MAX_GC=60
 
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=
 
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PRIMER_SEQUENCE_ID=internal_too_cold
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=8
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122 143,1
 
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PRIMER_LEFT_INPUT=TCCTACAGCTGTGGGAAAATG
 
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PRIMER_RIGHT_INPUT=CAGTGTGTACATGGCGGC
 
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PRIMER_INTERNAL_OLIGO_INPUT=gcgtacgatccatgctagc
 
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PRIMER_INTERNAL_OLIGO_MIN_TM=60
 
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PRIMER_MAX_TM=60
 
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PRIMER_MAX_GC=60
 
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=
 
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PRIMER_SEQUENCE_ID=internal_too_cold2
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=12
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122
 
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PRIMER_LEFT_INPUT=CCTACAGCTGTGGGAAAATG
 
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PRIMER_INTERNAL_OLIGO_INPUT=gcgtacgatccatgctagc
 
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PRIMER_INTERNAL_OLIGO_MIN_TM=60
 
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PRIMER_MAX_TM=100
 
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PRIMER_MAX_GC=100
 
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=
 
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PRIMER_SEQUENCE_ID=mispriming
 
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PRIMER_PICK_INTERNAL_OLIGO=1
 
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PRIMER_SELF_ANY=11
 
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PRIMER_MAX_POLY_X=100
 
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PRIMER_INTERNAL_OLIGO_MAX_POLY_X=100
 
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PRIMER_SELF_END=12
 
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PRIMER_NUM_RETURN=1
 
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SEQUENCE=TCCTACAGCTGTGGGAAAATGatgcgtacgatccatgctagctagctactatcgattagctatcatctactatcatctactatctactacacatctactatcatctacacacacacacacactaggccgctatatcatctagcGCCGCCATGTACACACTG
 
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TARGET=21,122
 
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PRIMER_LEFT_INPUT=CCTACAGCTGTGGGAAAATG
 
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PRIMER_INTERNAL_OLIGO_INPUT=gcgtacgatccatgctagc
 
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PRIMER_INTERNAL_OLIGO_MIN_TM=60
 
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PRIMER_MAX_TM=100
 
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PRIMER_MAX_GC=100
 
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PRIMER_MISPRIMING_LIBRARY=not_for_production.lib
 
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PRIMER_MAX_MISPRIMING=8
 
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=