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  • Committer: Bazaar Package Importer
  • Author(s): Aaron M. Ucko
  • Date: 2008-07-14 19:43:15 UTC
  • mfrom: (2.1.12 intrepid)
  • Revision ID: james.westby@ubuntu.com-20080714194315-ed44u9ek7txva2rz
Tags: 6.1.20080302-3
http://bugs.debian.org/490437
tools/readdb.c: enable madvise()-based code on all glibc (hence all
Debian) systems, not just Linux.  (Closes: #490437.)

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demo/bl2seq.c
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static char const rcsid[] = "$Id: bl2seq.c,v 6.86 2006/08/28 14:11:37 coulouri Exp $";
 
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static char const rcsid[] = "$Id: bl2seq.c,v 6.88 2007/05/07 13:29:11 kans Exp $";
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/**************************************************************************
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*                                                                         *
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***************************************************************************
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*
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* $Log: bl2seq.c,v $
 
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* Revision 6.88  2007/05/07 13:29:11  kans
 
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* added casts for Seq-data.gap (SeqDataPtr, SeqGapPtr, ByteStorePtr)
 
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*
 
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* Revision 6.87  2007/03/20 14:56:58  camacho
 
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* Call GeneticCodeSingletonInit/GeneticCodeSingletonFini
 
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*
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* Revision 6.86  2006/08/28 14:11:37  coulouri
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* correct seqids in asn.1 output when input sequences are specified as accessions; fixes rt#15192840
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*
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#include <algo/blast/api/blast_seq.h>
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#include <algo/blast/api/repeats_filter.h>
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#include <algo/blast/core/blast_util.h>
 
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#include <algo/blast/api/blast_api.h>
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#define LOCAL_BUFLEN 255
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static BioseqPtr
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        Uint1 strand_option = 0; /* FIXME */
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        SBlastOptions* search_options = NULL; /* Needed for formatting. */
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        SBlastSeqalignArray* seqalign_arr = NULL;
 
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        GeneticCodeSingletonInit();
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        strand_option = (Uint1) myargs[ARG_STRAND].intvalue;
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        slp2 = SeqLocSetFree(slp2);
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        fake_bsp = BlastDeleteFakeBioseq(fake_bsp);
 
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        GeneticCodeSingletonFini();
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        return 0;
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