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  • Committer: Bazaar Package Importer
  • Author(s): Aaron M. Ucko
  • Date: 2008-07-14 19:43:15 UTC
  • mfrom: (2.1.12 intrepid)
  • Revision ID: james.westby@ubuntu.com-20080714194315-ed44u9ek7txva2rz
Tags: 6.1.20080302-3
http://bugs.debian.org/490437
tools/readdb.c: enable madvise()-based code on all glibc (hence all
Debian) systems, not just Linux.  (Closes: #490437.)

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tools/posit.h
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/* $Id: posit.h,v 6.30 2006/09/18 17:49:06 papadopo Exp $
 
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/* $Id: posit.h,v 6.31 2007/01/22 19:20:55 camacho Exp $
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* ===========================================================================
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*
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*                            PUBLIC DOMAIN NOTICE
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Contents: header file for position-based BLAST.
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$Revision: 6.30 $
 
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$Revision: 6.31 $
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*****************************************************************************/
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/*
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* $Log: posit.h,v $
 
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* Revision 6.31  2007/01/22 19:20:55  camacho
 
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* From Alejandro Schaffer:
 
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* In posPurgeMatches, when in command-line mode, added a warning for the
 
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* situation in which only the query is used to construct the PSSM.
 
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*
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* Revision 6.30  2006/09/18 17:49:06  papadopo
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* increase size of PROTEIN_ALPHABET
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*
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void LIBCALL posCancel(posSearchItems *posSearch, compactSearchItems * compactSearch, Int4 first, Int4 second, Int4 matchStart, Int4 intervalLength);
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void LIBCALL posPurgeMatches(posSearchItems *posSearch, compactSearchItems * compactSearch);
 
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void LIBCALL posPurgeMatches(posSearchItems *posSearch, compactSearchItems * compactSearch, ValNodePtr * error_return);
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void LIBCALL posDemographics(posSearchItems *posSearch, 
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                             compactSearchItems * compactSearch,