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  • Committer: Bazaar Package Importer
  • Author(s): Aaron M. Ucko
  • Date: 2008-07-14 19:43:15 UTC
  • mfrom: (2.1.12 intrepid)
  • Revision ID: james.westby@ubuntu.com-20080714194315-ed44u9ek7txva2rz
Tags: 6.1.20080302-3
http://bugs.debian.org/490437
tools/readdb.c: enable madvise()-based code on all glibc (hence all
Debian) systems, not just Linux.  (Closes: #490437.)

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tools/blastpri.h
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******************************************************************************/
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/* $Revision: 6.123 $ 
 
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/* $Revision: 6.125 $ 
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* $Log: blastpri.h,v $
 
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* Revision 6.125  2007/03/13 20:39:04  madden
 
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*   - In the prototype for blast_set_parameters, change the type of the
 
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*     function arguments dropoff_number_of_bits_1st_pass and
 
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*     dropoff_number_of_bits_2nd_pass to Nlm_FloatHi.
 
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*   [from Mike Gertz]
 
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*
 
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* Revision 6.124  2007/01/17 15:46:00  madden
 
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* remove FilterDNA
 
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*
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* Revision 6.123  2006/09/21 13:42:37  madden
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* BlastProcessGiLists returns a boolean to specify that an attempt was made to process a list of GIs.  If no matches were found this can be reported back to the user
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*
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Boolean LIBCALL FilterDNA PROTO((BioseqPtr bsp, Int4 filter));
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Boolean LIBCALL FilterWithSeg PROTO((Uint1Ptr sequence, Int4 length, Uint1 alphabet));
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BLASTResultHitlistPtr LIBCALL BLASTResultHitlistFree PROTO((BLASTResultHitlistPtr result));
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Uint1Ptr
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GetPrivatTranslationTable PROTO((CharPtr genetic_code, 
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                                 Boolean reverse_complement));
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Int2 blast_set_parameters PROTO((BlastSearchBlkPtr search, Int4
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                                 dropoff_number_of_bits_1st_pass, Int4
 
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Int2 blast_set_parameters PROTO((BlastSearchBlkPtr search, Nlm_FloatHi
 
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                                 dropoff_number_of_bits_1st_pass, Nlm_FloatHi
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                                 dropoff_number_of_bits_2nd_pass, Nlm_FloatHi
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                                 avglen, Nlm_FloatHi searchsp, Int4 window));
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Boolean