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Viewing changes to algo/blast/core/blast_seqsrc_impl.h

  • Committer: Package Import Robot
  • Author(s): Aaron M. Ucko
  • Date: 2011-09-05 18:55:02 UTC
  • mfrom: (1.1.11 upstream)
  • Revision ID: package-import@ubuntu.com-20110905185502-iuvmoe65ytljhckn
Tags: 6.1.20110713-1
* New upstream release.
* debian/*.symbols: update accordingly.
* make/makeshlb.unx: link libcn3dOGL.so against -lm for sqrt.
* doc/man/*.1: update for new release.
* debian/rules:
  - (VIB): add asnmacro, as upstream takes care to publish binaries thereof.
  - Retire obsolete multiarch-unaware checks for libpthread.
  - Fully modernize Debhelper usage; in particular, transition to overrides.
* debian/compat: advance to 9 per rules modernization.
* debian/ncbi-tools-bin.install: add asnmacro.
* make/makenet.unx: link asnmacro only against libraries it directly needs.
* doc/man/asnmacro.1: give asnmacro a man page.
* doc/man/Psequin.1: list it in SEE ALSO.
* network/id1arch/idfetch.c: revert redundant change (from #295110).
* Convert to multiarch.
  - debian/rules: Install libraries (and ncbithr.o) to multiarch directories.
  - debian/lib*.install: match multiarch library paths.
  - debian/control:
    + Build-Depends: debhelper (>= 8.1.3~), implying a recent dpkg-dev.
    + Set Multi-Arch: as appropriate across the board, and specify
      Pre-Depends: ${misc:Pre-Depends} for runtime libraries.
* debian/*.lintian-overrides: drop leading slashes for Lintian 2.5.x.
* debian/control: Standards-Version: 3.9.2 (already compliant).

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algo/blast/core/blast_seqsrc_impl.h
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/*  $Id: blast_seqsrc_impl.h,v 1.11 2009/05/27 17:39:36 kazimird Exp $
 
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/*  $Id: blast_seqsrc_impl.h,v 1.12 2011/01/07 14:34:31 kazimird Exp $
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 * ===========================================================================
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 *
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 *                            PUBLIC DOMAIN NOTICE
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                 client-defined BlastSeqSrc implementation */
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    );
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/** Function pointer typedef to set partial fetching range */
 
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typedef void (*SetSeqRangeFnPtr)
 
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    (void* seqsrc_impl, /**< BlastSeqSrc implementation's data structure */
 
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     BlastSeqSrcSetRangesArg* arg /**< arguments to set partial fetching ranges */
 
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    );
 
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/** Function pointer typedef to retrieve sequences from data structure embedded
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 * in the BlastSeqSrc structure. Return value is one of the BLAST_SEQSRC_* 
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 * defines @sa BlastSeqSrcGetSeqArg */
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DECLARE_BLAST_SEQ_SRC_MEMBER_FUNCTIONS(GetStrFnPtr, GetName);
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DECLARE_BLAST_SEQ_SRC_MEMBER_FUNCTIONS(GetBoolFnPtr, GetIsProt);
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DECLARE_BLAST_SEQ_SRC_MEMBER_FUNCTIONS(GetBoolFnPtr, GetSupportsPartialFetching);
 
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DECLARE_BLAST_SEQ_SRC_MEMBER_FUNCTIONS(SetSeqRangeFnPtr, SetSeqRange);
 
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DECLARE_BLAST_SEQ_SRC_MEMBER_FUNCTIONS(GetSeqBlkFnPtr, GetSequence);
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DECLARE_BLAST_SEQ_SRC_MEMBER_FUNCTIONS(GetInt4FnPtr, GetSeqLen);
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DECLARE_BLAST_SEQ_SRC_MEMBER_FUNCTIONS(ReleaseSeqBlkFnPtr, ReleaseSequence);