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  • Committer: Package Import Robot
  • Author(s): Aaron M. Ucko
  • Date: 2011-09-05 18:55:02 UTC
  • mfrom: (1.1.11 upstream)
  • Revision ID: package-import@ubuntu.com-20110905185502-iuvmoe65ytljhckn
Tags: 6.1.20110713-1
* New upstream release.
* debian/*.symbols: update accordingly.
* make/makeshlb.unx: link libcn3dOGL.so against -lm for sqrt.
* doc/man/*.1: update for new release.
* debian/rules:
  - (VIB): add asnmacro, as upstream takes care to publish binaries thereof.
  - Retire obsolete multiarch-unaware checks for libpthread.
  - Fully modernize Debhelper usage; in particular, transition to overrides.
* debian/compat: advance to 9 per rules modernization.
* debian/ncbi-tools-bin.install: add asnmacro.
* make/makenet.unx: link asnmacro only against libraries it directly needs.
* doc/man/asnmacro.1: give asnmacro a man page.
* doc/man/Psequin.1: list it in SEE ALSO.
* network/id1arch/idfetch.c: revert redundant change (from #295110).
* Convert to multiarch.
  - debian/rules: Install libraries (and ncbithr.o) to multiarch directories.
  - debian/lib*.install: match multiarch library paths.
  - debian/control:
    + Build-Depends: debhelper (>= 8.1.3~), implying a recent dpkg-dev.
    + Set Multi-Arch: as appropriate across the board, and specify
      Pre-Depends: ${misc:Pre-Depends} for runtime libraries.
* debian/*.lintian-overrides: drop leading slashes for Lintian 2.5.x.
* debian/control: Standards-Version: 3.9.2 (already compliant).

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doc/fwd_check.sh
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#! /bin/sh
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# $Id: fwd_check.sh,v 1.57 2010/06/02 14:57:10 lavr Exp $
 
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# $Id: fwd_check.sh,v 1.72 2011/07/08 19:18:56 lavr Exp $
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# Author:   Denis Vakatov (vakatov@ncbi,nlm.nih.gov)
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# Modified: Anton Lavrentiev (lavr@ncbi.nlm.nih.gov)
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#
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{
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cat <<EOF
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;130.14.25.13   5555    RETIRED
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10.10.150.7     5555    INTERNAL
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130.14.25.26    5555    INTERNAL
 
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10.10.150.44    5555    INTERNAL
 
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130.14.24.219   5555    INTERNAL
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130.14.29.112   5860    RESERVED
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130.14.29.112   5861    RESERVED
 
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130.14.29.112   5861    OK
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130.14.29.112   5862    RESERVED
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130.14.29.112   5863    RESERVED
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130.14.29.112   5864    OK
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130.14.29.112   5865    OK
 
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130.14.29.112   5864    RESERVED
 
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130.14.29.112   5865    RESERVED
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130.14.29.112   5866    RESERVED
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130.14.29.112   5867    OK
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130.14.29.112   5868    OK
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130.14.29.112   5869    OK
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130.14.29.112   5870    RESERVED
 
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130.14.29.112   5869    RESERVED
 
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130.14.29.112   5870    OK
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130.14.29.112   4444    RETIRED
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130.14.29.112   4445    RESERVED
 
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130.14.29.112   4445    OK
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130.14.29.112   4446    RESERVED
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130.14.29.112   4447    RESERVED
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130.14.29.112   4448    OK
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130.14.29.112   4449    OK
 
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130.14.29.112   4448    RESERVED
 
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130.14.29.112   4449    RESERVED
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130.14.29.112   4450    RESERVED
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130.14.29.112   4451    OK
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130.14.29.112   4452    OK
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130.14.29.112   4453    OK
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130.14.29.112   4454    RESERVED
 
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130.14.29.112   4453    RESERVED
 
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130.14.29.112   4454    OK
 
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130.14.29.112   443     FB-OK
 
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130.14.29.112   22      FB-OK
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165.112.7.12    5860    RESERVED
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165.112.7.12    5861    RESERVED
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165.112.7.12    5862    OK
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while read x_host x_port x_status ; do
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  test "`echo $x_host | grep -c '^[;]'`" != "0"  &&  continue
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  if [ "$x_port" -lt "5860" -o "$x_port" -gt "5870" ]; then
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    test "$x_status" = "RESERVED"  &&  continue
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    if [ _"$HTTP_CAF" = _"" -o _"$HTTP_CAF_EXTERNAL" != _"" ]; then
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      test _"$HTTP_NCBI_RELAY" = _"" &&  continue
 
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    if [ "$x_port" -ne "22" -a "$x_port" -ne "443" ]; then
 
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      test "$x_status" = "RESERVED"  &&  continue
 
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      if [ _"$HTTP_CAF" = _"" -o _"$HTTP_CAF_EXTERNAL" != _"" ]; then
 
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        test _"$HTTP_NCBI_RELAY" = _"" &&  continue
 
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      fi
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    fi
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  fi
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  if [ "$x_status" = "RETIRED" -o "$x_status" = "RESERVED" ]; then
 
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  if [ "$x_status" = "RETIRED" -o "$x_status" = "RESERVED" -o "$x_status" = "PENDING" ]; then
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    printf '%s\t%-8s\n'         "${x_host}:${x_port}"   "$x_status"
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    continue
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  fi
 
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  unset fb_port
 
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  test "$x_status" = "FB-OK" && fb_port="TRUE"
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  test "$x_status" = "READYING"  &&  unset x_status
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  ( echo ; test -z "$netcat" && sleep ${delay_sec} ) | ${netcat:-telnet} $x_host $x_port >$temp 2>&1 &
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  pid=$!
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  trap 'rm -f $temp; kill $pid >/dev/null 2>&1' 1 2 15
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  ( sleep `expr $delay_sec + 2`  &&  kill $pid ) >/dev/null 2>&1 &
 
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  ( sleep `expr $delay_sec + 1`  &&  kill $pid ) >/dev/null 2>&1 &
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  guard=$!
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  wait $pid >/dev/null 2>&1
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  kill $guard >/dev/null 2>&1
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    else
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      x_status=''
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    fi
107
 
    printf '%s\t%-8s%s\n'       "${x_host}:${x_port}"   "${x_status:-FAILED}"   "${x_reason:+   }${x_reason}"
 
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    status=${x_status:-FAILED}
 
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    test ! -z "$fb_port" && status="FB-$status"
 
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    printf '%s\t%-8s%s\n'       "${x_host}:${x_port}"   "${status}"     "${x_reason:+   }${x_reason}"
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  fi
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  rm -f $temp
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done 2>&1 | grep -v 'Terminated'