89
196
match-text "HIV" ,
90
197
match-location starts ,
91
198
case-sensitive TRUE ,
94
type-constraint any } } } ,
98
leave-original FALSE ,
107
match-text "16S rRNA" ,
108
match-location contains ,
109
case-sensitive TRUE ,
111
not-present FALSE } } } ,
115
leave-original FALSE ,
116
src-feat-constraint {
124
match-text "16S ribosomal RNA" ,
125
match-location contains ,
126
case-sensitive TRUE ,
128
not-present FALSE } } } ,
139
is-all-caps NULL } } } } ,
150
is-all-caps NULL } } } } ,
151
fix-usa-and-states NULL ,
206
ignore-weasel FALSE } ,
207
type-constraint any } } } ,
214
value "Homo sapiens" ,
215
existing-text leave-old } ,
216
also-change-mrna FALSE ,
222
match-text "Human immunodeficiency virus" ,
223
match-location starts ,
224
case-sensitive FALSE ,
232
ignore-weasel FALSE } ,
233
type-constraint any } } } ,
240
case-insensitive FALSE } ,
243
also-change-mrna FALSE } ,
248
affil-country FALSE ,
256
is-all-caps NULL } } ,
262
is-all-caps NULL } } ,
268
is-all-caps NULL } } ,
274
is-all-caps NULL } } ,
280
is-all-caps NULL } } ,
284
field serial-number ,
286
is-all-caps NULL } } ,
292
is-all-caps NULL } } ,
298
is-all-caps NULL } } ,
304
is-all-caps NULL } } ,
310
is-all-caps NULL } } ,
316
is-all-caps NULL } } ,
320
field affil-country ,
322
is-all-caps NULL } } ,
328
is-all-caps NULL } } ,
334
is-all-caps NULL } } ,
340
is-all-caps NULL } } ,
346
is-all-caps NULL } } ,
350
field affil-zipcode ,
352
is-all-caps NULL } } } } ,
357
affil-country FALSE ,
365
is-all-caps NULL } } ,
371
is-all-caps NULL } } ,
377
is-all-caps NULL } } ,
383
is-all-caps NULL } } ,
387
field affil-country ,
389
is-all-caps NULL } } ,
395
is-all-caps NULL } } ,
399
field affil-zipcode ,
401
is-all-caps NULL } } } } ,
406
affil-country FALSE ,
414
is-all-lower NULL } } ,
420
is-all-lower NULL } } ,
426
is-all-lower NULL } } ,
432
is-all-lower NULL } } ,
438
is-all-lower NULL } } ,
442
field serial-number ,
444
is-all-lower NULL } } ,
450
is-all-lower NULL } } ,
456
is-all-lower NULL } } ,
462
is-all-lower NULL } } ,
468
is-all-lower NULL } } ,
474
is-all-lower NULL } } ,
478
field affil-country ,
480
is-all-lower NULL } } ,
486
is-all-lower NULL } } ,
492
is-all-lower NULL } } ,
498
is-all-lower NULL } } ,
504
is-all-lower NULL } } ,
508
field affil-zipcode ,
510
is-all-lower NULL } } } } ,
515
affil-country FALSE ,
523
is-all-lower NULL } } ,
529
is-all-lower NULL } } ,
535
is-all-lower NULL } } ,
541
is-all-lower NULL } } ,
545
field affil-country ,
547
is-all-lower NULL } } ,
553
is-all-lower NULL } } ,
559
is-all-lower NULL } } ,
563
field affil-zipcode ,
565
is-all-lower NULL } } } } ,
570
affil-country FALSE ,
578
is-all-caps NULL } } } } ,
583
affil-country FALSE ,
591
is-all-lower NULL } } } } ,
596
affil-country FALSE ,
604
is-all-caps NULL } } } } ,
609
affil-country FALSE ,
617
is-all-lower NULL } } } } ,
628
affil-country FALSE ,
635
also-change-mrna FALSE ,
642
is-all-punct NULL } } } } ,
648
also-change-mrna FALSE ,
656
match-location equals ,
657
case-sensitive FALSE ,
665
case-sensitive FALSE ,
666
whole-word FALSE } } ,
672
ignore-weasel FALSE } } } } } ,
677
pub affil-zipcode } ,
678
also-change-mrna FALSE ,
683
field affil-zipcode ,
685
is-all-punct NULL } } } } ,
690
pub affil-zipcode } ,
691
also-change-mrna FALSE ,
696
field affil-zipcode ,
699
match-location equals ,
700
case-sensitive FALSE ,
708
case-sensitive FALSE ,
709
whole-word FALSE } } ,
715
ignore-weasel FALSE } } } } } ,
721
also-change-mrna FALSE ,
728
is-all-punct NULL } } } } ,
734
also-change-mrna FALSE ,
742
match-location equals ,
743
case-sensitive FALSE ,
751
case-sensitive FALSE ,
752
whole-word FALSE } } ,
758
ignore-weasel FALSE } } } } } ,
764
also-change-mrna FALSE ,
771
is-all-punct NULL } } } } ,
777
also-change-mrna FALSE ,
785
match-location equals ,
786
case-sensitive FALSE ,
794
case-sensitive FALSE ,
795
whole-word FALSE } } ,
801
ignore-weasel FALSE } } } } } ,
807
also-change-mrna FALSE ,
814
is-all-punct NULL } } } } ,
820
also-change-mrna FALSE ,
828
match-location equals ,
829
case-sensitive FALSE ,
837
case-sensitive FALSE ,
838
whole-word FALSE } } ,
844
ignore-weasel FALSE } } } } } ,
850
also-change-mrna FALSE ,
857
is-all-punct NULL } } } } ,
863
also-change-mrna FALSE ,
871
match-location equals ,
872
case-sensitive FALSE ,
880
case-sensitive FALSE ,
881
whole-word FALSE } } ,
887
ignore-weasel FALSE } } } } } ,
892
affil-country FALSE ,
900
is-all-caps NULL } } } } ,
908
case-insensitive FALSE } ,
911
also-change-mrna FALSE } ,
919
case-insensitive FALSE } ,
922
also-change-mrna FALSE } ,
930
case-insensitive FALSE } ,
933
also-change-mrna FALSE } ,
941
case-insensitive FALSE } ,
944
also-change-mrna FALSE } ,
953
is-all-punct NULL } } } } ,
963
match-location equals ,
964
case-sensitive FALSE ,
976
"direct submission" ,
979
case-sensitive FALSE ,
980
whole-word FALSE } } ,
986
ignore-weasel FALSE } } } } } ,
995
is-not-present NULL } } } } ,
1002
value "Homo sapiens" ,
1003
existing-text replace-old } ,
1004
also-change-mrna FALSE ,
1010
match-text "human" ,
1011
match-location equals ,
1012
case-sensitive FALSE ,
1013
ignore-space FALSE ,
1014
ignore-punct FALSE ,
1020
case-sensitive FALSE ,
1021
whole-word FALSE } } ,
1025
is-all-lower FALSE ,
1026
is-all-punct FALSE ,
1027
ignore-weasel FALSE } ,
1028
type-constraint any } } } ,
1034
location mitochondrion ,
1036
existing-text replace-old } ,
1037
also-change-mrna FALSE ,
1046
match-text "control region" ,
1047
match-location equals ,
1048
case-sensitive FALSE ,
1053
word "control region" ,
1054
case-sensitive FALSE ,
1055
whole-word FALSE } } ,
1059
is-all-lower FALSE ,
1060
is-all-punct FALSE ,
1061
ignore-weasel FALSE } } ,
1063
match-text "mitochondrion" ,
1064
match-location equals ,
1065
case-sensitive TRUE ,
1066
ignore-space FALSE ,
1067
ignore-punct FALSE ,
1071
is-all-lower FALSE ,
1072
is-all-punct FALSE ,
1073
ignore-weasel FALSE } } } ,
1079
location mitochondrion ,
1081
existing-text replace-old } ,
1082
also-change-mrna FALSE ,
1091
match-text "control region" ,
1092
match-location equals ,
1093
case-sensitive FALSE ,
1095
ignore-punct FALSE ,
1099
is-all-lower FALSE ,
1100
is-all-punct FALSE ,
1101
ignore-weasel FALSE } } ,
1103
match-text "mitochondrion" ,
1104
match-location equals ,
1105
case-sensitive TRUE ,
1106
ignore-space FALSE ,
1107
ignore-punct FALSE ,
1111
is-all-lower FALSE ,
1112
is-all-punct FALSE ,
1113
ignore-weasel FALSE } } } ,
1119
location mitochondrion ,
1121
existing-text replace-old } ,
1122
also-change-mrna FALSE ,
1130
strandedness any } ,
1132
match-text "mitochondrion" ,
1133
match-location equals ,
1134
case-sensitive TRUE ,
1135
ignore-space FALSE ,
1136
ignore-punct FALSE ,
1140
is-all-lower FALSE ,
1141
is-all-punct FALSE ,
1142
ignore-weasel FALSE } } } ,
1150
src-qual isolation-source ,
1152
src-qual dev-stage ,
1154
src-qual tissue-type ,
1164
legal-qual standard-name ,
1168
keep-original FALSE ,
1169
capitalization none ,
1170
existing-text append-semi } ,
1171
also-change-mrna FALSE } ,
1173
collection-date NULL ,
1179
location nucleomorph } ,
1180
also-change-mrna FALSE ,
1186
match-text "taxon:" ,
1187
match-location starts ,
1188
case-sensitive TRUE ,
1189
ignore-space FALSE ,
1190
ignore-punct FALSE ,
1194
is-all-lower FALSE ,
1195
is-all-punct FALSE ,
1196
ignore-weasel FALSE } ,
1197
type-constraint any } ,
1201
type-constraint any } ,
1205
type-constraint any } ,
1210
match-text "Chlorarachniophyceae" ,
1211
match-location contains ,
1212
case-sensitive TRUE ,
1213
ignore-space FALSE ,
1214
ignore-punct FALSE ,
1218
is-all-lower FALSE ,
1219
is-all-punct FALSE ,
1220
ignore-weasel FALSE } ,
1221
type-constraint any } ,
1226
match-text "Cryptophyta" ,
1227
match-location contains ,
1228
case-sensitive TRUE ,
1229
ignore-space FALSE ,
1230
ignore-punct FALSE ,
1234
is-all-lower FALSE ,
1235
is-all-punct FALSE ,
1236
ignore-weasel FALSE } ,
1237
type-constraint any } } } ,
1243
textqual orgmod-note } ,
1244
also-change-mrna FALSE ,
1248
textqual orgmod-note ,
1250
match-text "Organelle: nucleomorph" ,
1251
match-location equals ,
1252
case-sensitive FALSE ,
1253
ignore-space FALSE ,
1254
ignore-punct FALSE ,
1258
is-all-lower FALSE ,
1259
is-all-punct FALSE ,
1260
ignore-weasel FALSE } ,
1261
type-constraint any } ,
1266
match-text "taxon:" ,
1267
match-location starts ,
1268
case-sensitive TRUE ,
1269
ignore-space FALSE ,
1270
ignore-punct FALSE ,
1274
is-all-lower FALSE ,
1275
is-all-punct FALSE ,
1276
ignore-weasel FALSE } ,
1277
type-constraint any } ,
1281
type-constraint any } ,
1285
type-constraint any } ,
1290
match-text "Chlorarachniophyceae" ,
1291
match-location contains ,
1292
case-sensitive TRUE ,
1293
ignore-space FALSE ,
1294
ignore-punct FALSE ,
1298
is-all-lower FALSE ,
1299
is-all-punct FALSE ,
1300
ignore-weasel FALSE } ,
1301
type-constraint any } ,
1306
match-text "Cryptophyta" ,
1307
match-location contains ,
1308
case-sensitive TRUE ,
1309
ignore-space FALSE ,
1310
ignore-punct FALSE ,
1314
is-all-lower FALSE ,
1315
is-all-punct FALSE ,
1316
ignore-weasel FALSE } ,
1317
type-constraint any } } } ,
1323
textqual orgmod-note } ,
1324
also-change-mrna FALSE ,
1328
textqual orgmod-note ,
1330
match-text "nucleomorph" ,
1331
match-location equals ,
1332
case-sensitive FALSE ,
1333
ignore-space FALSE ,
1334
ignore-punct FALSE ,
1338
is-all-lower FALSE ,
1339
is-all-punct FALSE ,
1340
ignore-weasel FALSE } ,
1341
type-constraint any } ,
1346
match-text "taxon:" ,
1347
match-location starts ,
1348
case-sensitive TRUE ,
1349
ignore-space FALSE ,
1350
ignore-punct FALSE ,
1354
is-all-lower FALSE ,
1355
is-all-punct FALSE ,
1356
ignore-weasel FALSE } ,
1357
type-constraint any } ,
1361
type-constraint any } ,
1365
type-constraint any } ,
1370
match-text "Chlorarachniophyceae" ,
1371
match-location contains ,
1372
case-sensitive TRUE ,
1373
ignore-space FALSE ,
1374
ignore-punct FALSE ,
1378
is-all-lower FALSE ,
1379
is-all-punct FALSE ,
1380
ignore-weasel FALSE } ,
1381
type-constraint any } ,
1386
match-text "Cryptophyta" ,
1387
match-location contains ,
1388
case-sensitive TRUE ,
1389
ignore-space FALSE ,
1390
ignore-punct FALSE ,
1394
is-all-lower FALSE ,
1395
is-all-punct FALSE ,
1396
ignore-weasel FALSE } ,
1397
type-constraint any } } } ,
1403
textqual subsource-note } ,
1404
also-change-mrna FALSE ,
1408
textqual subsource-note ,
1410
match-text "Organelle: nucleomorph" ,
1411
match-location equals ,
1412
case-sensitive FALSE ,
1413
ignore-space FALSE ,
1414
ignore-punct FALSE ,
1418
is-all-lower FALSE ,
1419
is-all-punct FALSE ,
1420
ignore-weasel FALSE } ,
1421
type-constraint any } ,
1426
match-text "taxon:" ,
1427
match-location starts ,
1428
case-sensitive TRUE ,
1429
ignore-space FALSE ,
1430
ignore-punct FALSE ,
1434
is-all-lower FALSE ,
1435
is-all-punct FALSE ,
1436
ignore-weasel FALSE } ,
1437
type-constraint any } ,
1441
type-constraint any } ,
1445
type-constraint any } ,
1450
match-text "Chlorarachniophyceae" ,
1451
match-location contains ,
1452
case-sensitive TRUE ,
1453
ignore-space FALSE ,
1454
ignore-punct FALSE ,
1458
is-all-lower FALSE ,
1459
is-all-punct FALSE ,
1460
ignore-weasel FALSE } ,
1461
type-constraint any } ,
1466
match-text "Cryptophyta" ,
1467
match-location contains ,
1468
case-sensitive TRUE ,
1469
ignore-space FALSE ,
1470
ignore-punct FALSE ,
1474
is-all-lower FALSE ,
1475
is-all-punct FALSE ,
1476
ignore-weasel FALSE } ,
1477
type-constraint any } } } ,
1483
textqual subsource-note } ,
1484
also-change-mrna FALSE ,
1488
textqual subsource-note ,
1490
match-text "nucleomorph" ,
1491
match-location equals ,
1492
case-sensitive FALSE ,
1493
ignore-space FALSE ,
1494
ignore-punct FALSE ,
1498
is-all-lower FALSE ,
1499
is-all-punct FALSE ,
1500
ignore-weasel FALSE } ,
1501
type-constraint any } ,
1506
match-text "taxon:" ,
1507
match-location starts ,
1508
case-sensitive TRUE ,
1509
ignore-space FALSE ,
1510
ignore-punct FALSE ,
1514
is-all-lower FALSE ,
1515
is-all-punct FALSE ,
1516
ignore-weasel FALSE } ,
1517
type-constraint any } ,
1521
type-constraint any } ,
1525
type-constraint any } ,
1530
match-text "Chlorarachniophyceae" ,
1531
match-location contains ,
1532
case-sensitive TRUE ,
1533
ignore-space FALSE ,
1534
ignore-punct FALSE ,
1538
is-all-lower FALSE ,
1539
is-all-punct FALSE ,
1540
ignore-weasel FALSE } ,
1541
type-constraint any } ,
1546
match-text "Cryptophyta" ,
1547
match-location contains ,
1548
case-sensitive TRUE ,
1549
ignore-space FALSE ,
1550
ignore-punct FALSE ,
1554
is-all-lower FALSE ,
1555
is-all-punct FALSE ,
1556
ignore-weasel FALSE } ,
1557
type-constraint any } } } ,
1563
location macronuclear } ,
1564
also-change-mrna FALSE ,
1570
match-text "taxon:" ,
1571
match-location starts ,
1572
case-sensitive TRUE ,
1573
ignore-space FALSE ,
1574
ignore-punct FALSE ,
1578
is-all-lower FALSE ,
1579
is-all-punct FALSE ,
1580
ignore-weasel FALSE } ,
1581
type-constraint any } ,
1585
type-constraint any } ,
1589
type-constraint any } ,
1594
match-text "Ciliophora" ,
1595
match-location contains ,
1596
case-sensitive TRUE ,
1597
ignore-space FALSE ,
1598
ignore-punct FALSE ,
1602
is-all-lower FALSE ,
1603
is-all-punct FALSE ,
1604
ignore-weasel FALSE } ,
1605
type-constraint any } } } ,
1611
textqual orgmod-note } ,
1612
also-change-mrna FALSE ,
1616
textqual orgmod-note ,
1618
match-text "Organelle: macronuclear" ,
1619
match-location equals ,
1620
case-sensitive FALSE ,
1621
ignore-space FALSE ,
1622
ignore-punct FALSE ,
1626
is-all-lower FALSE ,
1627
is-all-punct FALSE ,
1628
ignore-weasel FALSE } ,
1629
type-constraint any } ,
1634
match-text "taxon:" ,
1635
match-location starts ,
1636
case-sensitive TRUE ,
1637
ignore-space FALSE ,
1638
ignore-punct FALSE ,
1642
is-all-lower FALSE ,
1643
is-all-punct FALSE ,
1644
ignore-weasel FALSE } ,
1645
type-constraint any } ,
1649
type-constraint any } ,
1653
type-constraint any } ,
1658
match-text "Ciliophora" ,
1659
match-location contains ,
1660
case-sensitive TRUE ,
1661
ignore-space FALSE ,
1662
ignore-punct FALSE ,
1666
is-all-lower FALSE ,
1667
is-all-punct FALSE ,
1668
ignore-weasel FALSE } ,
1669
type-constraint any } } } ,
1675
textqual orgmod-note } ,
1676
also-change-mrna FALSE ,
1680
textqual orgmod-note ,
1682
match-text "macronuclear" ,
1683
match-location equals ,
1684
case-sensitive FALSE ,
1685
ignore-space FALSE ,
1686
ignore-punct FALSE ,
1690
is-all-lower FALSE ,
1691
is-all-punct FALSE ,
1692
ignore-weasel FALSE } ,
1693
type-constraint any } ,
1698
match-text "taxon:" ,
1699
match-location starts ,
1700
case-sensitive TRUE ,
1701
ignore-space FALSE ,
1702
ignore-punct FALSE ,
1706
is-all-lower FALSE ,
1707
is-all-punct FALSE ,
1708
ignore-weasel FALSE } ,
1709
type-constraint any } ,
1713
type-constraint any } ,
1717
type-constraint any } ,
1722
match-text "Ciliophora" ,
1723
match-location contains ,
1724
case-sensitive TRUE ,
1725
ignore-space FALSE ,
1726
ignore-punct FALSE ,
1730
is-all-lower FALSE ,
1731
is-all-punct FALSE ,
1732
ignore-weasel FALSE } ,
1733
type-constraint any } } } ,
1739
textqual subsource-note } ,
1740
also-change-mrna FALSE ,
1744
textqual subsource-note ,
1746
match-text "Organelle: macronuclear" ,
1747
match-location equals ,
1748
case-sensitive FALSE ,
1749
ignore-space FALSE ,
1750
ignore-punct FALSE ,
1754
is-all-lower FALSE ,
1755
is-all-punct FALSE ,
1756
ignore-weasel FALSE } ,
1757
type-constraint any } ,
1762
match-text "taxon:" ,
1763
match-location starts ,
1764
case-sensitive TRUE ,
1765
ignore-space FALSE ,
1766
ignore-punct FALSE ,
1770
is-all-lower FALSE ,
1771
is-all-punct FALSE ,
1772
ignore-weasel FALSE } ,
1773
type-constraint any } ,
1777
type-constraint any } ,
1781
type-constraint any } ,
1786
match-text "Ciliophora" ,
1787
match-location contains ,
1788
case-sensitive TRUE ,
1789
ignore-space FALSE ,
1790
ignore-punct FALSE ,
1794
is-all-lower FALSE ,
1795
is-all-punct FALSE ,
1796
ignore-weasel FALSE } ,
1797
type-constraint any } } } ,
1803
textqual subsource-note } ,
1804
also-change-mrna FALSE ,
1808
textqual subsource-note ,
1810
match-text "macronuclear" ,
1811
match-location equals ,
1812
case-sensitive FALSE ,
1813
ignore-space FALSE ,
1814
ignore-punct FALSE ,
1818
is-all-lower FALSE ,
1819
is-all-punct FALSE ,
1820
ignore-weasel FALSE } ,
1821
type-constraint any } ,
1826
match-text "taxon:" ,
1827
match-location starts ,
1828
case-sensitive TRUE ,
1829
ignore-space FALSE ,
1830
ignore-punct FALSE ,
1834
is-all-lower FALSE ,
1835
is-all-punct FALSE ,
1836
ignore-weasel FALSE } ,
1837
type-constraint any } ,
1841
type-constraint any } ,
1845
type-constraint any } ,
1850
match-text "Ciliophora" ,
1851
match-location contains ,
1852
case-sensitive TRUE ,
1853
ignore-space FALSE ,
1854
ignore-punct FALSE ,
1858
is-all-lower FALSE ,
1859
is-all-punct FALSE ,
1860
ignore-weasel FALSE } ,
1861
type-constraint any } } } ,
1870
textqual all-quals } ,
1871
also-change-mrna FALSE ,
1874
match-location contains ,
1875
case-sensitive TRUE ,
1876
ignore-space FALSE ,
1877
ignore-punct FALSE ,
1881
is-all-lower FALSE ,
1883
ignore-weasel FALSE } } } ,
188
2451
textqual nat-host ,
191
match-location equals ,
192
case-sensitive FALSE ,
194
not-present FALSE } ,
195
type-constraint any } } } ,
201
location mitochondrion ,
203
existing-text replace-old } ,
204
also-change-mrna FALSE ,
2453
match-text "homo sapiens" ,
2454
match-location equals ,
2455
case-sensitive FALSE ,
2457
ignore-punct FALSE ,
2460
word "homo sapiens" ,
2463
case-sensitive FALSE ,
2464
whole-word FALSE } } ,
2468
is-all-lower FALSE ,
2469
is-all-punct FALSE ,
2470
ignore-weasel FALSE } ,
2471
type-constraint any } ,
2473
match-text "Homo sapiens" ,
2474
match-location equals ,
2475
case-sensitive TRUE ,
2476
ignore-space FALSE ,
2477
ignore-punct FALSE ,
2481
is-all-lower FALSE ,
2482
is-all-punct FALSE ,
2483
ignore-weasel FALSE } } } ,
2490
field-to isolate } ,
2492
keep-original FALSE ,
2493
capitalization none ,
2494
existing-text leave-old } ,
2495
also-change-mrna FALSE ,
2499
match-location starts ,
2500
case-sensitive FALSE ,
2501
ignore-space FALSE ,
2502
ignore-punct FALSE ,
2506
is-all-lower FALSE ,
2507
is-all-punct FALSE ,
2508
ignore-weasel FALSE } } } ,
2515
field-to isolate } ,
2517
keep-original FALSE ,
2518
capitalization none ,
2519
existing-text leave-old } ,
2520
also-change-mrna FALSE ,
2524
match-location starts ,
2525
case-sensitive FALSE ,
2526
ignore-space FALSE ,
2527
ignore-punct FALSE ,
2531
is-all-lower FALSE ,
2532
is-all-punct FALSE ,
2533
ignore-weasel FALSE } } } ,
2538
find-txt "GGE_gel_band_" ,
2539
repl-txt "GGE gel band " ,
2541
case-insensitive FALSE } ,
2544
textqual isolate } ,
2545
also-change-mrna FALSE } ,
2550
find-txt "GGE_gel_band" ,
2551
repl-txt "GGE gel band" ,
2553
case-insensitive FALSE } ,
2556
textqual isolate } ,
2557
also-change-mrna FALSE } ,
2562
find-txt "GGE_gel_" ,
2563
repl-txt "GGE gel band " ,
2565
case-insensitive FALSE } ,
2568
textqual isolate } ,
2569
also-change-mrna FALSE } ,
2574
find-txt "GGE_gel" ,
2575
repl-txt "GGE gel band" ,
2577
case-insensitive FALSE } ,
2580
textqual isolate } ,
2581
also-change-mrna FALSE } ,
2586
find-txt "GGE_band_" ,
2587
repl-txt "GGE gel band " ,
2589
case-insensitive FALSE } ,
2592
textqual isolate } ,
2593
also-change-mrna FALSE } ,
2598
find-txt "GGE_band" ,
2599
repl-txt "GGE gel band" ,
2601
case-insensitive FALSE } ,
2604
textqual isolate } ,
2605
also-change-mrna FALSE } ,
2610
find-txt "dgge gel band" ,
2611
repl-txt "DGGE gel band" ,
2613
case-insensitive TRUE } ,
2616
textqual isolate } ,
2617
also-change-mrna FALSE ,
2620
match-text "DGGE gel band" ,
2621
match-location contains ,
2622
case-sensitive TRUE ,
2623
ignore-space FALSE ,
2624
ignore-punct FALSE ,
2628
is-all-lower FALSE ,
2629
is-all-punct FALSE ,
2630
ignore-weasel FALSE } } } ,
2635
find-txt "tgge gel band" ,
2636
repl-txt "TGGE gel band" ,
2638
case-insensitive TRUE } ,
2641
textqual isolate } ,
2642
also-change-mrna FALSE ,
2645
match-text "TGGE gel band" ,
2646
match-location contains ,
2647
case-sensitive TRUE ,
2648
ignore-space FALSE ,
2649
ignore-punct FALSE ,
2653
is-all-lower FALSE ,
2654
is-all-punct FALSE ,
2655
ignore-weasel FALSE } } } ,
2660
find-txt "DGGE band" ,
2661
repl-txt "DGGE gel band" ,
2663
case-insensitive TRUE } ,
2666
textqual isolate } ,
2667
also-change-mrna FALSE } ,
2672
find-txt "TGGE band" ,
2673
repl-txt "TGGE gel band" ,
2675
case-insensitive TRUE } ,
2678
textqual isolate } ,
2679
also-change-mrna FALSE } ,
2685
repl-txt "DGGE gel band" ,
2686
location beginning ,
2687
case-insensitive TRUE } ,
2690
textqual isolate } ,
2691
also-change-mrna FALSE ,
2694
match-text "gel band" ,
2695
match-location contains ,
2696
case-sensitive FALSE ,
2697
ignore-space FALSE ,
2698
ignore-punct FALSE ,
2702
is-all-lower FALSE ,
2703
is-all-punct FALSE ,
2704
ignore-weasel FALSE } ,
2707
match-location contains ,
2708
case-sensitive FALSE ,
2709
ignore-space FALSE ,
2710
ignore-punct FALSE ,
2714
is-all-lower FALSE ,
2715
is-all-punct FALSE ,
2716
ignore-weasel FALSE } ,
2719
match-location contains ,
2720
case-sensitive FALSE ,
2721
ignore-space FALSE ,
2722
ignore-punct FALSE ,
2726
is-all-lower FALSE ,
2727
is-all-punct FALSE ,
2728
ignore-weasel FALSE } } } ,
2734
repl-txt "TGGE gel band" ,
2735
location beginning ,
2736
case-insensitive TRUE } ,
2739
textqual isolate } ,
2740
also-change-mrna FALSE ,
2743
match-text "gel band" ,
2744
match-location contains ,
2745
case-sensitive FALSE ,
2746
ignore-space FALSE ,
2747
ignore-punct FALSE ,
2751
is-all-lower FALSE ,
2752
is-all-punct FALSE ,
2753
ignore-weasel FALSE } ,
2756
match-location contains ,
2757
case-sensitive TRUE ,
2758
ignore-space FALSE ,
2759
ignore-punct FALSE ,
2763
is-all-lower FALSE ,
2764
is-all-punct FALSE ,
2765
ignore-weasel FALSE } ,
2768
match-location contains ,
2769
case-sensitive FALSE ,
2770
ignore-space FALSE ,
2771
ignore-punct FALSE ,
2775
is-all-lower FALSE ,
2776
is-all-punct FALSE ,
2777
ignore-weasel FALSE } } } ,
2786
case-insensitive FALSE } ,
2789
also-change-mrna FALSE } ,
2797
case-insensitive FALSE } ,
2800
textqual taxname } ,
2801
also-change-mrna FALSE ,
2807
match-text "taxon:" ,
2808
match-location starts ,
2809
case-sensitive FALSE ,
2810
ignore-space FALSE ,
2811
ignore-punct FALSE ,
2815
is-all-lower FALSE ,
2816
is-all-punct FALSE ,
2817
ignore-weasel FALSE } ,
2818
type-constraint any } } } ,
2826
case-insensitive FALSE } ,
2829
textqual taxname } ,
2830
also-change-mrna FALSE ,
2836
match-text "taxon:" ,
2837
match-location starts ,
2838
case-sensitive FALSE ,
2839
ignore-space FALSE ,
2840
ignore-punct FALSE ,
2844
is-all-lower FALSE ,
2845
is-all-punct FALSE ,
2846
ignore-weasel FALSE } ,
2847
type-constraint any } } } ,
2855
case-insensitive FALSE } ,
2858
textqual taxname } ,
2859
also-change-mrna FALSE ,
2865
match-text "taxon:" ,
2866
match-location starts ,
2867
case-sensitive FALSE ,
2868
ignore-space FALSE ,
2869
ignore-punct FALSE ,
2873
is-all-lower FALSE ,
2874
is-all-punct FALSE ,
2875
ignore-weasel FALSE } ,
2876
type-constraint any } } } ,
2884
case-insensitive FALSE } ,
2887
textqual taxname } ,
2888
also-change-mrna FALSE ,
2894
match-text "taxon:" ,
2895
match-location starts ,
2896
case-sensitive TRUE ,
2897
ignore-space FALSE ,
2898
ignore-punct FALSE ,
2902
is-all-lower FALSE ,
2903
is-all-punct FALSE ,
2904
ignore-weasel FALSE } ,
2905
type-constraint any } } } ,
2913
case-insensitive FALSE } ,
2916
textqual nat-host } ,
2917
also-change-mrna FALSE } ,
2922
find-txt "oxydase" ,
2923
repl-txt "oxidase" ,
2925
case-insensitive TRUE } ,
2927
cds-gene-prot prot-name } ,
2928
also-change-mrna FALSE } ,
2938
legal-qual product } ,
2939
value "cytochrome b" ,
2940
existing-text replace-old } ,
2941
also-change-mrna FALSE ,
2948
legal-qual product } ,
2950
match-text "cytochrome b gene" ,
2951
match-location equals ,
2952
case-sensitive FALSE ,
2965
"partial sequence" ,
2966
"complete sequence" } ,
2967
case-sensitive FALSE ,
2968
whole-word FALSE } ,
2971
case-sensitive FALSE ,
2972
whole-word FALSE } } ,
2976
is-all-lower FALSE ,
2977
is-all-punct FALSE ,
2978
ignore-weasel FALSE } } } } ,
2986
legal-qual product } ,
2987
value "maturase K" ,
2988
existing-text replace-old } ,
2989
also-change-mrna FALSE ,
2996
legal-qual product } ,
2998
match-text "maturase K gene" ,
2999
match-location equals ,
3000
case-sensitive FALSE ,
3013
"partial sequence" ,
3014
"complete sequence" } ,
3015
case-sensitive FALSE ,
3016
whole-word FALSE } ,
3019
case-sensitive FALSE ,
3020
whole-word FALSE } } ,
3024
is-all-lower FALSE ,
3025
is-all-punct FALSE ,
3026
ignore-weasel FALSE } } } } ,
3034
legal-qual product } ,
3035
value "cytochrome c oxidase subunit I" ,
3036
existing-text replace-old } ,
3037
also-change-mrna FALSE ,
3044
legal-qual product } ,
3046
match-text "cytochrome c oxidase subunit I gene" ,
3047
match-location equals ,
3048
case-sensitive FALSE ,
3054
case-sensitive FALSE ,
3055
whole-word FALSE } ,
3060
case-sensitive FALSE ,
3061
whole-word FALSE } ,
3068
"partial sequence" ,
3069
"complete sequence" ,
3071
case-sensitive FALSE ,
3072
whole-word FALSE } ,
3075
case-sensitive FALSE ,
3076
whole-word FALSE } } ,
3080
is-all-lower FALSE ,
3081
is-all-punct FALSE ,
3082
ignore-weasel FALSE } } } } ,
3090
legal-qual product } ,
3091
value "cytochrome oxidase subunit I" ,
3092
existing-text replace-old } ,
3093
also-change-mrna FALSE ,
3100
legal-qual product } ,
3102
match-text "cytochrome oxidase subunit I gene" ,
3103
match-location equals ,
3104
case-sensitive FALSE ,
3110
case-sensitive FALSE ,
3111
whole-word FALSE } ,
3116
case-sensitive FALSE ,
3117
whole-word FALSE } ,
3124
"partial sequence" ,
3125
"complete sequence" ,
3127
case-sensitive FALSE ,
3128
whole-word FALSE } ,
3131
case-sensitive FALSE ,
3132
whole-word FALSE } } ,
3136
is-all-lower FALSE ,
3137
is-all-punct FALSE ,
3138
ignore-weasel FALSE } } } } ,
3146
legal-qual product } ,
3147
value "cytochrome c oxidase subunit 1" ,
3148
existing-text replace-old } ,
3149
also-change-mrna FALSE ,
3156
legal-qual product } ,
3158
match-text "cytochrome c oxidase subunit 1 gene" ,
3159
match-location equals ,
3160
case-sensitive FALSE ,
3166
case-sensitive FALSE ,
3167
whole-word FALSE } ,
3172
case-sensitive FALSE ,
3173
whole-word FALSE } ,
3180
"partial sequence" ,
3181
"complete sequence" ,
3183
case-sensitive FALSE ,
3184
whole-word FALSE } ,
3187
case-sensitive FALSE ,
3188
whole-word FALSE } } ,
3192
is-all-lower FALSE ,
3193
is-all-punct FALSE ,
3194
ignore-weasel FALSE } } } } ,
3202
legal-qual product } ,
3203
value "cytochrome oxidase subunit 1" ,
3204
existing-text replace-old } ,
3205
also-change-mrna FALSE ,
3212
legal-qual product } ,
3214
match-text "cytochrome oxidase subunit 1 gene" ,
3215
match-location equals ,
3216
case-sensitive FALSE ,
3222
case-sensitive FALSE ,
3223
whole-word FALSE } ,
3228
case-sensitive FALSE ,
3229
whole-word FALSE } ,
3236
"partial sequence" ,
3237
"complete sequence" ,
3239
case-sensitive FALSE ,
3240
whole-word FALSE } ,
3243
case-sensitive FALSE ,
3244
whole-word FALSE } } ,
3248
is-all-lower FALSE ,
3249
is-all-punct FALSE ,
3250
ignore-weasel FALSE } } } } ,
3258
legal-qual product } ,
3259
value "cytochrome c oxidase subunit 2" ,
3260
existing-text replace-old } ,
3261
also-change-mrna FALSE ,
3268
legal-qual product } ,
3270
match-text "cytochrome c oxidase subunit 2 gene" ,
3271
match-location equals ,
3272
case-sensitive FALSE ,
3278
case-sensitive FALSE ,
3279
whole-word FALSE } ,
3284
case-sensitive FALSE ,
3285
whole-word FALSE } ,
3293
"partial sequence" ,
3294
"complete sequence" } ,
3295
case-sensitive FALSE ,
3296
whole-word FALSE } ,
3299
case-sensitive FALSE ,
3300
whole-word FALSE } } ,
3304
is-all-lower FALSE ,
3305
is-all-punct FALSE ,
3306
ignore-weasel FALSE } } } } ,
3314
legal-qual product } ,
3315
value "cytochrome oxidase subunit 2" ,
3316
existing-text replace-old } ,
3317
also-change-mrna FALSE ,
3324
legal-qual product } ,
3326
match-text "cytochrome oxidase subunit 2 gene" ,
3327
match-location equals ,
3328
case-sensitive FALSE ,
3334
case-sensitive FALSE ,
3335
whole-word FALSE } ,
3340
case-sensitive FALSE ,
3341
whole-word FALSE } ,
3349
"partial sequence" ,
3350
"complete sequence" } ,
3351
case-sensitive FALSE ,
3352
whole-word FALSE } ,
3355
case-sensitive FALSE ,
3356
whole-word FALSE } } ,
3360
is-all-lower FALSE ,
3361
is-all-punct FALSE ,
3362
ignore-weasel FALSE } } } } ,
3370
legal-qual product } ,
3371
value "ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit" ,
3372
existing-text replace-old } ,
3373
also-change-mrna FALSE ,
3380
legal-qual product } ,
3382
match-text "ribulose-1,5-bisphosphate carboxylase/oxygenase large
3384
match-location equals ,
3385
case-sensitive FALSE ,
3391
case-sensitive FALSE ,
3392
whole-word FALSE } ,
3396
"complete sequence" ,
3402
"partial sequence" } ,
3403
case-sensitive FALSE ,
3404
whole-word FALSE } ,
3407
case-sensitive FALSE ,
3408
whole-word FALSE } } ,
3412
is-all-lower FALSE ,
3413
is-all-punct FALSE ,
3414
ignore-weasel FALSE } } } } ,
3422
legal-qual product } ,
3423
value "ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit" ,
3424
existing-text replace-old } ,
3425
also-change-mrna FALSE ,
3432
legal-qual product } ,
3434
match-text "ribulose-1,5-bisphosphate carboxylase/oxygenase small
3436
match-location equals ,
3437
case-sensitive FALSE ,
3443
case-sensitive FALSE ,
3444
whole-word FALSE } ,
3450
"partial sequence" ,
3454
"complete sequence" } ,
3455
case-sensitive FALSE ,
3456
whole-word FALSE } ,
3459
case-sensitive FALSE ,
3460
whole-word FALSE } } ,
3464
is-all-lower FALSE ,
3465
is-all-punct FALSE ,
3466
ignore-weasel FALSE } } } } ,
3470
leave-original FALSE ,
3471
src-feat-constraint {
3478
strandedness any } ,
3486
match-text "16S ribosomal RNA gene" ,
3487
match-location equals ,
3488
case-sensitive FALSE ,
3494
"partial sequence" ,
3495
"complete sequence" ,
3501
case-sensitive FALSE ,
3502
whole-word FALSE } ,
3504
word "ribosomal RNA" ,
3505
case-sensitive FALSE ,
3506
whole-word FALSE } ,
3509
case-sensitive FALSE ,
3510
whole-word FALSE } ,
3515
case-sensitive FALSE ,
3516
whole-word FALSE } ,
3521
case-sensitive FALSE ,
3522
whole-word FALSE } ,
3525
case-sensitive FALSE ,
3526
whole-word FALSE } ,
3537
case-sensitive FALSE ,
3538
whole-word FALSE } ,
3540
word " ribosomal RNA gene" ,
3544
case-sensitive FALSE ,
3545
whole-word FALSE } } ,
3549
is-all-lower FALSE ,
3550
is-all-punct FALSE ,
3551
ignore-weasel FALSE } } } } ,
3560
value "12S ribosomal RNA" ,
3561
existing-text replace-old } ,
3562
also-change-mrna FALSE ,
3569
legal-qual product } ,
3571
match-text "12S ribosomal RNA gene" ,
3572
match-location equals ,
3573
case-sensitive FALSE ,
3578
word "ribosomal RNA gene" ,
3579
case-sensitive FALSE ,
3580
whole-word FALSE } ,
3585
case-sensitive FALSE ,
3586
whole-word FALSE } ,
3588
word "ribosomal RNA gene" ,
3597
case-sensitive FALSE ,
3598
whole-word FALSE } ,
3606
"gene sequence region" ,
3607
"partial sequence" ,
3608
"partial gene sequence" ,
3610
case-sensitive FALSE ,
3611
whole-word FALSE } ,
3613
word "12S ribosomal RNA gene" ,
3619
"12SrDNA gene sequence" ,
3620
"12SrRNA gene sequence" ,
3621
"12SrDNA gene sequence region" ,
3622
"12SrRNA gene sequence region" ,
3625
case-sensitive FALSE ,
3626
whole-word FALSE } } ,
3630
is-all-lower FALSE ,
3631
is-all-punct FALSE ,
3632
ignore-weasel FALSE } } } } ,
3641
value "18S ribosomal RNA" ,
3642
existing-text replace-old } ,
3643
also-change-mrna FALSE ,
3650
legal-qual product } ,
3652
match-text "18S ribosomal RNA gene" ,
3653
match-location equals ,
3654
case-sensitive FALSE ,
3659
word "ribosomal RNA gene" ,
3660
case-sensitive FALSE ,
3661
whole-word FALSE } ,
3666
case-sensitive FALSE ,
3667
whole-word FALSE } ,
3669
word "ribosomal RNA gene" ,
3678
case-sensitive FALSE ,
3679
whole-word FALSE } ,
3687
"gene sequence region" ,
3688
"partial sequence" ,
3689
"partial gene sequence" ,
3691
case-sensitive FALSE ,
3692
whole-word FALSE } ,
3694
word "18S ribosomal RNA gene" ,
3700
"18SrDNA gene sequence" ,
3701
"18SrRNA gene sequence" ,
3702
"18SrDNA gene sequence region" ,
3703
"18SrRNA gene sequence region" ,
3706
case-sensitive FALSE ,
3707
whole-word FALSE } } ,
3711
is-all-lower FALSE ,
3712
is-all-punct FALSE ,
3713
ignore-weasel FALSE } } } } ,
3722
value "5.8S ribosomal RNA" ,
3723
existing-text replace-old } ,
3724
also-change-mrna FALSE ,
3731
legal-qual product } ,
3733
match-text "5.8S ribosomal RNA gene" ,
3734
match-location equals ,
3735
case-sensitive FALSE ,
3740
word "ribosomal RNA gene" ,
3741
case-sensitive FALSE ,
3742
whole-word FALSE } ,
3747
case-sensitive FALSE ,
3748
whole-word FALSE } ,
3750
word "ribosomal RNA gene" ,
3759
case-sensitive FALSE ,
3760
whole-word FALSE } ,
3768
"gene sequence region" ,
3769
"partial sequence" ,
3770
"partial gene sequence" ,
3772
case-sensitive FALSE ,
3773
whole-word FALSE } ,
3775
word "5.8S ribosomal RNA gene" ,
3781
"5.8SrDNA gene sequence" ,
3782
"5.8SrRNA gene sequence" ,
3783
"5.8SrDNA gene sequence region" ,
3784
"5.8SrRNA gene sequence region" ,
3786
"5.8S rRNA gene" } ,
3787
case-sensitive FALSE ,
3788
whole-word FALSE } } ,
3792
is-all-lower FALSE ,
3793
is-all-punct FALSE ,
3794
ignore-weasel FALSE } } } } ,
3803
value "28S ribosomal RNA" ,
3804
existing-text replace-old } ,
3805
also-change-mrna FALSE ,
3812
legal-qual product } ,
3814
match-text "28S ribosomal RNA gene" ,
3815
match-location equals ,
3816
case-sensitive FALSE ,
3821
word "ribosomal RNA gene" ,
3822
case-sensitive FALSE ,
3823
whole-word FALSE } ,
3828
case-sensitive FALSE ,
3829
whole-word FALSE } ,
3831
word "ribosomal RNA gene" ,
3840
case-sensitive FALSE ,
3841
whole-word FALSE } ,
3849
"gene sequence region" ,
3850
"partial sequence" ,
3851
"partial gene sequence" ,
3853
case-sensitive FALSE ,
3854
whole-word FALSE } ,
3856
word "28S ribosomal RNA gene" ,
3862
"28SrDNA gene sequence" ,
3863
"28SrRNA gene sequence" ,
3864
"28SrDNA gene sequence region" ,
3865
"28SrRNA gene sequence region" ,
3868
case-sensitive FALSE ,
3869
whole-word FALSE } } ,
3873
is-all-lower FALSE ,
3874
is-all-punct FALSE ,
3875
ignore-weasel FALSE } } } } ,
3884
value "26S ribosomal RNA" ,
3885
existing-text replace-old } ,
3886
also-change-mrna FALSE ,
3893
legal-qual product } ,
3895
match-text "26S ribosomal RNA gene" ,
3896
match-location equals ,
3897
case-sensitive FALSE ,
3902
word "ribosomal RNA gene" ,
3903
case-sensitive FALSE ,
3904
whole-word FALSE } ,
3909
case-sensitive FALSE ,
3910
whole-word FALSE } ,
3912
word "ribosomal RNA gene" ,
3921
case-sensitive FALSE ,
3922
whole-word FALSE } ,
3930
"gene sequence region" ,
3931
"partial sequence" ,
3932
"partial gene sequence" ,
3934
case-sensitive FALSE ,
3935
whole-word FALSE } ,
3937
word "26S ribosomal RNA gene" ,
3943
"26SrDNA gene sequence" ,
3944
"26SrRNA gene sequence" ,
3945
"26SrDNA gene sequence region" ,
3946
"26SrRNA gene sequence region" ,
3949
case-sensitive FALSE ,
3950
whole-word FALSE } } ,
3954
is-all-lower FALSE ,
3955
is-all-punct FALSE ,
3956
ignore-weasel FALSE } } } } ,
3965
value "16S ribosomal RNA" ,
3966
existing-text replace-old } ,
3967
also-change-mrna FALSE ,
3974
legal-qual product } ,
3976
match-text "16S ribosomal RNA gene" ,
3977
match-location equals ,
3978
case-sensitive FALSE ,
3983
word "ribosomal RNA gene" ,
3984
case-sensitive FALSE ,
3985
whole-word FALSE } ,
3990
case-sensitive FALSE ,
3991
whole-word FALSE } ,
3993
word "ribosomal RNA gene" ,
4002
case-sensitive FALSE ,
4003
whole-word FALSE } ,
4011
"gene sequence region" ,
4012
"partial sequence" ,
4013
"partial gene sequence" ,
4015
case-sensitive FALSE ,
4016
whole-word FALSE } ,
4018
word "16S ribosomal RNA gene" ,
4024
"16SrDNA gene sequence" ,
4025
"16SrRNA gene sequence" ,
4026
"16SrDNA gene sequence region" ,
4027
"16SrRNA gene sequence region" ,
4030
case-sensitive FALSE ,
4031
whole-word FALSE } } ,
4035
is-all-lower FALSE ,
4036
is-all-punct FALSE ,
4037
ignore-weasel FALSE } } } } ,
4046
value "23S ribosomal RNA" ,
4047
existing-text replace-old } ,
4048
also-change-mrna FALSE ,
4055
legal-qual product } ,
4057
match-text "23S ribosomal RNA gene" ,
4058
match-location equals ,
4059
case-sensitive FALSE ,
4064
word "ribosomal RNA gene" ,
4065
case-sensitive FALSE ,
4066
whole-word FALSE } ,
4071
case-sensitive FALSE ,
4072
whole-word FALSE } ,
4074
word "ribosomal RNA gene" ,
4083
case-sensitive FALSE ,
4084
whole-word FALSE } ,
4092
"gene sequence region" ,
4093
"partial sequence" ,
4094
"partial gene sequence" ,
4096
case-sensitive FALSE ,
4097
whole-word FALSE } ,
4099
word "23S ribosomal RNA gene" ,
4105
"23SrDNA gene sequence" ,
4106
"23SrRNA gene sequence" ,
4107
"23SrDNA gene sequence region" ,
4108
"23SrRNA gene sequence region" ,
4111
case-sensitive FALSE ,
4112
whole-word FALSE } } ,
4116
is-all-lower FALSE ,
4117
is-all-punct FALSE ,
4118
ignore-weasel FALSE } } } } ,
4128
legal-qual product } ,
4130
keep-original FALSE ,
4131
capitalization none ,
4132
existing-text append-semi } ,
4133
also-change-mrna FALSE ,
4142
match-text "internal transcribed spacer 1, ITS1 sequence" ,
4143
match-location equals ,
4144
case-sensitive FALSE ,
4149
word "internal transcribed spacer 1," ,
4150
case-sensitive FALSE ,
4151
whole-word FALSE } ,
4153
word "internal transcribed spacer 2," ,
4154
case-sensitive FALSE ,
4155
whole-word FALSE } ,
4160
case-sensitive FALSE ,
4161
whole-word FALSE } ,
4169
case-sensitive FALSE ,
4170
whole-word FALSE } ,
4173
case-sensitive FALSE ,
4174
whole-word FALSE } ,
4180
"partial sequence" ,
4181
"complete sequence" ,
4182
"partial gene sequence" ,
4183
"complete gene sequence" } ,
4184
case-sensitive FALSE ,
4185
whole-word FALSE } ,
4190
case-sensitive FALSE ,
4191
whole-word FALSE } } ,
4195
is-all-lower FALSE ,
4196
is-all-punct FALSE ,
4197
ignore-weasel FALSE } } } } ,
4201
leave-original FALSE ,
4202
src-feat-constraint {
4210
match-text "Region: Internal transcribed spacer 1, ITS1 sequence" ,
4211
match-location equals ,
4212
case-sensitive FALSE ,
4217
word "internal transcribed spacer 1" ,
4218
case-sensitive FALSE ,
4219
whole-word FALSE } ,
4221
word "internal transcribed spacer 2" ,
4222
case-sensitive FALSE ,
4223
whole-word FALSE } ,
4228
case-sensitive FALSE ,
4229
whole-word FALSE } ,
4234
case-sensitive FALSE ,
4235
whole-word FALSE } ,
4242
case-sensitive FALSE ,
4243
whole-word FALSE } } ,
4247
is-all-lower FALSE ,
4248
is-all-punct FALSE ,
4249
ignore-weasel FALSE } } } } ,
4253
leave-original FALSE ,
4254
src-feat-constraint {
4262
match-text "Internal transcribed spacer 1, ITS1" ,
4263
match-location equals ,
4264
case-sensitive FALSE ,
4270
case-sensitive FALSE ,
4271
whole-word FALSE } ,
4273
word "internal transcribed spacer 1" ,
4274
case-sensitive FALSE ,
4275
whole-word FALSE } ,
4277
word "internal transcribed spacer 2" ,
4278
case-sensitive FALSE ,
4279
whole-word FALSE } ,
4284
case-sensitive FALSE ,
4285
whole-word FALSE } ,
4291
case-sensitive FALSE ,
4292
whole-word FALSE } ,
4294
word "Internal transcribed spacer 1, ITS1" ,
4296
"Internal transcribed spacer 1" ,
4297
"Internal transcribed spacer 2" } ,
4298
case-sensitive FALSE ,
4299
whole-word FALSE } ,
4306
case-sensitive FALSE ,
4307
whole-word FALSE } } ,
4311
is-all-lower FALSE ,
4312
is-all-punct FALSE ,
4313
ignore-weasel FALSE } } } } ,
4315
type-from misc-feature ,
4317
leave-original FALSE ,
4318
src-feat-constraint {
4326
match-text "Region: Internal transcribed spacer 1, ITS1" ,
4327
match-location equals ,
4328
case-sensitive FALSE ,
4334
case-sensitive FALSE ,
4335
whole-word FALSE } ,
4337
word "internal transcribed spacer 1" ,
4338
case-sensitive FALSE ,
4339
whole-word FALSE } ,
4341
word "internal transcribed spacer 2" ,
4342
case-sensitive FALSE ,
4343
whole-word FALSE } ,
4348
case-sensitive FALSE ,
4349
whole-word FALSE } ,
4351
word "Region: Internal transcribed spacer 1, ITS1" ,
4353
"Region: Internal transcribed spacer 1" } ,
4354
case-sensitive FALSE ,
4355
whole-word FALSE } ,
4362
case-sensitive FALSE ,
4363
whole-word FALSE } } ,
4367
is-all-lower FALSE ,
4368
is-all-punct FALSE ,
4369
ignore-weasel FALSE } } } } ,
4378
value "internal transcribed spacer 1" ,
4379
existing-text replace-old } ,
4380
also-change-mrna FALSE ,
4389
match-text "internal transcribed spacer 1, ITS1 sequence" ,
4390
match-location equals ,
4391
case-sensitive FALSE ,
4397
case-sensitive FALSE ,
4398
whole-word FALSE } ,
4403
case-sensitive FALSE ,
4404
whole-word FALSE } ,
4410
case-sensitive FALSE ,
4411
whole-word FALSE } ,
4419
case-sensitive FALSE ,
4420
whole-word FALSE } ,
4422
word "internal transcribed spacer 1" ,
4423
case-sensitive FALSE ,
4424
whole-word FALSE } ,
4430
case-sensitive FALSE ,
4431
whole-word FALSE } ,
4434
case-sensitive FALSE ,
4435
whole-word FALSE } } ,
4439
is-all-lower FALSE ,
4440
is-all-punct FALSE ,
4441
ignore-weasel FALSE } } } } ,
4450
value "internal transcribed spacer 2" ,
4451
existing-text replace-old } ,
4452
also-change-mrna FALSE ,
4461
match-text "internal transcribed spacer 2, ITS2 sequence" ,
4462
match-location equals ,
4463
case-sensitive FALSE ,
4469
case-sensitive FALSE ,
4470
whole-word FALSE } ,
4475
case-sensitive FALSE ,
4476
whole-word FALSE } ,
4482
case-sensitive FALSE ,
4483
whole-word FALSE } ,
4491
case-sensitive FALSE ,
4492
whole-word FALSE } ,
4494
word "internal transcribed spacer 2" ,
4495
case-sensitive FALSE ,
4496
whole-word FALSE } ,
4502
case-sensitive FALSE ,
4503
whole-word FALSE } ,
4506
case-sensitive FALSE ,
4507
whole-word FALSE } } ,
4511
is-all-lower FALSE ,
4512
is-all-punct FALSE ,
4513
ignore-weasel FALSE } } } } ,
4521
existing-text replace-old } ,
4522
also-change-mrna FALSE ,
4528
strandedness any } ,
4536
match-text "5.8S ribosomal RNA" ,
4537
match-location equals ,
4538
case-sensitive TRUE ,
4539
ignore-space FALSE ,
4540
ignore-punct FALSE ,
4550
case-sensitive FALSE ,
4551
whole-word FALSE } } ,
4555
is-all-lower FALSE ,
4556
is-all-punct FALSE ,
4557
ignore-weasel FALSE } } } } ,
4565
existing-text replace-old } ,
4566
also-change-mrna FALSE ,
4572
strandedness any } ,
4580
match-text "5.8S ribosomal RNA" ,
4581
match-location equals ,
4582
case-sensitive TRUE ,
4583
ignore-space FALSE ,
4584
ignore-punct FALSE ,
4594
case-sensitive FALSE ,
4595
whole-word FALSE } } ,
4599
is-all-lower FALSE ,
4600
is-all-punct FALSE ,
4601
ignore-weasel FALSE } } } } ,
4609
existing-text replace-old } ,
4610
also-change-mrna FALSE ,
4616
strandedness any } ,
4624
match-text "5.8S ribosomal RNA" ,
4625
match-location equals ,
4626
case-sensitive TRUE ,
4627
ignore-space FALSE ,
4628
ignore-punct FALSE ,
4638
case-sensitive FALSE ,
4639
whole-word FALSE } } ,
4643
is-all-lower FALSE ,
4644
is-all-punct FALSE ,
4645
ignore-weasel FALSE } } ,
4657
existing-text replace-old } ,
4658
also-change-mrna FALSE ,
4664
strandedness any } ,
4672
match-text "internal transcribed spacer 1" ,
4673
match-location equals ,
4674
case-sensitive TRUE ,
4675
ignore-space FALSE ,
4676
ignore-punct FALSE ,
4682
case-sensitive FALSE ,
4683
whole-word FALSE } } ,
4687
is-all-lower FALSE ,
4688
is-all-punct FALSE ,
4689
ignore-weasel FALSE } } } } ,
4697
existing-text replace-old } ,
4698
also-change-mrna FALSE ,
4704
strandedness any } ,
4712
match-text "internal transcribed spacer 1" ,
4713
match-location equals ,
4714
case-sensitive TRUE ,
4715
ignore-space FALSE ,
4716
ignore-punct FALSE ,
4722
case-sensitive FALSE ,
4723
whole-word FALSE } } ,
4727
is-all-lower FALSE ,
4728
is-all-punct FALSE ,
4729
ignore-weasel FALSE } } } } ,
4737
existing-text replace-old } ,
4738
also-change-mrna FALSE ,
4744
strandedness any } ,
4752
match-text "internal transcribed spacer 1" ,
4753
match-location equals ,
4754
case-sensitive TRUE ,
4755
ignore-space FALSE ,
4756
ignore-punct FALSE ,
4762
case-sensitive FALSE ,
4763
whole-word FALSE } } ,
4767
is-all-lower FALSE ,
4768
is-all-punct FALSE ,
4769
ignore-weasel FALSE } } ,
4780
retranslate-cds FALSE ,
4793
match-text "16S ribosomal RNA" ,
4794
match-location equals ,
4795
case-sensitive TRUE ,
4796
ignore-space FALSE ,
4797
ignore-punct FALSE ,
4801
is-all-lower FALSE ,
4802
is-all-punct FALSE ,
4803
ignore-weasel FALSE } ,
4812
strandedness any } } } ,
4818
location extrachrom } ,
4819
also-change-mrna FALSE ,
4828
match-text "16S ribosomal RNA" ,
4829
match-location contains ,
4830
case-sensitive TRUE ,
4831
ignore-space FALSE ,
4832
ignore-punct FALSE ,
4845
case-sensitive FALSE ,
4846
whole-word FALSE } } ,
4850
is-all-lower FALSE ,
4851
is-all-punct FALSE ,
4852
ignore-weasel FALSE } } } } ,
4858
textqual all-notes } ,
4859
also-change-mrna FALSE ,
4868
match-text "16S ribosomal RNA" ,
4869
match-location contains ,
4870
case-sensitive TRUE ,
4871
ignore-space FALSE ,
4872
ignore-punct FALSE ,
4885
case-sensitive FALSE ,
4886
whole-word FALSE } } ,
4890
is-all-lower FALSE ,
4891
is-all-punct FALSE ,
4892
ignore-weasel FALSE } } ,
4894
match-text "extrachromosomal" ,
4895
match-location equals ,
4896
case-sensitive TRUE ,
4897
ignore-space FALSE ,
4898
ignore-punct FALSE ,
4902
is-all-lower FALSE ,
4903
is-all-punct FALSE ,
4904
ignore-weasel FALSE } } } ,
4905
apply-molinfo-block {
4910
molecule macro-other } ,
4919
match-text "16S ribosomal RNA" ,
4920
match-location equals ,
4921
case-sensitive TRUE ,
4922
ignore-space FALSE ,
4923
ignore-punct FALSE ,
4936
case-sensitive FALSE ,
4937
whole-word FALSE } } ,
4941
is-all-lower FALSE ,
4942
is-all-punct FALSE ,
4943
ignore-weasel FALSE } } } } ,
4948
find-txt "recombination activating gene" ,
4949
repl-txt "recombination activating protein" ,
4951
case-insensitive TRUE } ,
4953
cds-gene-prot prot-name } ,
4954
also-change-mrna FALSE ,
4957
match-text "recombination activating gene" ,
4958
match-location equals ,
4959
case-sensitive FALSE ,
4967
case-sensitive FALSE ,
4968
whole-word FALSE } } ,
4972
is-all-lower FALSE ,
4973
is-all-punct FALSE ,
4974
ignore-weasel FALSE } } } ,
4982
legal-qual product } ,
4983
value "gag protein" ,
4984
existing-text replace-old } ,
4985
also-change-mrna FALSE ,
4992
legal-qual product } ,
4995
match-location equals ,
4996
case-sensitive FALSE ,
5004
case-sensitive FALSE ,
5005
whole-word FALSE } } ,
5009
is-all-lower FALSE ,
5010
is-all-punct FALSE ,
5011
ignore-weasel FALSE } } ,
5016
match-text "Human immunodeficiency virus-1" ,
5017
match-location equals ,
5018
case-sensitive FALSE ,
5024
is-all-lower FALSE ,
5025
is-all-punct FALSE ,
5026
ignore-weasel FALSE } ,
5027
type-constraint any } } } ,
5035
legal-qual product } ,
5036
value "pol protein" ,
5037
existing-text replace-old } ,
5038
also-change-mrna FALSE ,
5045
legal-qual product } ,
5048
match-location equals ,
5049
case-sensitive FALSE ,
5057
case-sensitive FALSE ,
5058
whole-word FALSE } } ,
5062
is-all-lower FALSE ,
5063
is-all-punct FALSE ,
5064
ignore-weasel FALSE } } ,
5069
match-text "Human immunodeficiency virus-1" ,
5070
match-location equals ,
5071
case-sensitive FALSE ,
5077
is-all-lower FALSE ,
5078
is-all-punct FALSE ,
5079
ignore-weasel FALSE } ,
5080
type-constraint any } } } ,
5088
legal-qual product } ,
5089
value "vif protein" ,
5090
existing-text replace-old } ,
5091
also-change-mrna FALSE ,
5098
legal-qual product } ,
5101
match-location equals ,
5102
case-sensitive FALSE ,
5110
case-sensitive FALSE ,
5111
whole-word FALSE } } ,
5115
is-all-lower FALSE ,
5116
is-all-punct FALSE ,
5117
ignore-weasel FALSE } } ,
5122
match-text "Human immunodeficiency virus-1" ,
5123
match-location equals ,
5124
case-sensitive FALSE ,
5130
is-all-lower FALSE ,
5131
is-all-punct FALSE ,
5132
ignore-weasel FALSE } ,
5133
type-constraint any } } } ,
5141
legal-qual product } ,
5142
value "vpr protein" ,
5143
existing-text replace-old } ,
5144
also-change-mrna FALSE ,
5151
legal-qual product } ,
5154
match-location equals ,
5155
case-sensitive FALSE ,
5163
case-sensitive FALSE ,
5164
whole-word FALSE } } ,
5168
is-all-lower FALSE ,
5169
is-all-punct FALSE ,
5170
ignore-weasel FALSE } } ,
5175
match-text "Human immunodeficiency virus-1" ,
5176
match-location equals ,
5177
case-sensitive FALSE ,
5183
is-all-lower FALSE ,
5184
is-all-punct FALSE ,
5185
ignore-weasel FALSE } ,
5186
type-constraint any } } } ,
5194
legal-qual product } ,
5195
value "tat protein" ,
5196
existing-text replace-old } ,
5197
also-change-mrna FALSE ,
5204
legal-qual product } ,
5207
match-location equals ,
5208
case-sensitive FALSE ,
5216
case-sensitive FALSE ,
5217
whole-word FALSE } } ,
5221
is-all-lower FALSE ,
5222
is-all-punct FALSE ,
5223
ignore-weasel FALSE } } ,
5228
match-text "Human immunodeficiency virus-1" ,
5229
match-location equals ,
5230
case-sensitive FALSE ,
5236
is-all-lower FALSE ,
5237
is-all-punct FALSE ,
5238
ignore-weasel FALSE } ,
5239
type-constraint any } } } ,
5247
legal-qual product } ,
5248
value "rev protein" ,
5249
existing-text replace-old } ,
5250
also-change-mrna FALSE ,
5257
legal-qual product } ,
5260
match-location equals ,
5261
case-sensitive FALSE ,
5269
case-sensitive FALSE ,
5270
whole-word FALSE } } ,
5274
is-all-lower FALSE ,
5275
is-all-punct FALSE ,
5276
ignore-weasel FALSE } } ,
5281
match-text "Human immunodeficiency virus-1" ,
5282
match-location equals ,
5283
case-sensitive FALSE ,
5289
is-all-lower FALSE ,
5290
is-all-punct FALSE ,
5291
ignore-weasel FALSE } ,
5292
type-constraint any } } } ,
5300
legal-qual product } ,
5301
value "vpu protein" ,
5302
existing-text replace-old } ,
5303
also-change-mrna FALSE ,
5310
legal-qual product } ,
5313
match-location equals ,
5314
case-sensitive FALSE ,
5322
case-sensitive FALSE ,
5323
whole-word FALSE } } ,
5327
is-all-lower FALSE ,
5328
is-all-punct FALSE ,
5329
ignore-weasel FALSE } } ,
5334
match-text "Human immunodeficiency virus-1" ,
5335
match-location equals ,
5336
case-sensitive FALSE ,
5342
is-all-lower FALSE ,
5343
is-all-punct FALSE ,
5344
ignore-weasel FALSE } ,
5345
type-constraint any } } } ,
5353
legal-qual product } ,
5354
value "envelope glycoprotein" ,
5355
existing-text replace-old } ,
5356
also-change-mrna FALSE ,
5363
legal-qual product } ,
5366
match-location equals ,
5367
case-sensitive FALSE ,
5375
case-sensitive FALSE ,
5376
whole-word FALSE } ,
5381
case-sensitive FALSE ,
5382
whole-word FALSE } } ,
5386
is-all-lower FALSE ,
5387
is-all-punct FALSE ,
5388
ignore-weasel FALSE } } ,
5393
match-text "Human immunodeficiency virus-1" ,
5394
match-location equals ,
5395
case-sensitive FALSE ,
5401
is-all-lower FALSE ,
5402
is-all-punct FALSE ,
5403
ignore-weasel FALSE } ,
5404
type-constraint any } } } ,
5412
legal-qual product } ,
5413
value "nef protein" ,
5414
existing-text replace-old } ,
5415
also-change-mrna FALSE ,
5422
legal-qual product } ,
5425
match-location equals ,
5426
case-sensitive FALSE ,
5434
case-sensitive FALSE ,
5435
whole-word FALSE } } ,
5439
is-all-lower FALSE ,
5440
is-all-punct FALSE ,
5441
ignore-weasel FALSE } } ,
5446
match-text "Human immunodeficiency virus-1" ,
5447
match-location equals ,
5448
case-sensitive FALSE ,
5454
is-all-lower FALSE ,
5455
is-all-punct FALSE ,
5456
ignore-weasel FALSE } ,
5457
type-constraint any } } } ,
5465
legal-qual codon-start } } ,
5466
also-change-mrna FALSE ,
5473
legal-qual codon-start } ,
5476
match-location equals ,
5477
case-sensitive FALSE ,
5478
ignore-space FALSE ,
5479
ignore-punct FALSE ,
5483
is-all-lower FALSE ,
5484
is-all-punct FALSE ,
5485
ignore-weasel FALSE } } } } ,
5492
value "Gallus gallus" ,
5493
existing-text replace-old } ,
5494
also-change-mrna FALSE ,
5500
match-text "Gallus domesticus (chicken)" ,
5501
match-location equals ,
5502
case-sensitive FALSE ,
5509
case-sensitive FALSE ,
5510
whole-word FALSE } ,
5513
case-sensitive FALSE ,
5514
whole-word FALSE } } ,
5518
is-all-lower FALSE ,
5519
is-all-punct FALSE ,
5520
ignore-weasel FALSE } ,
5521
type-constraint any } } } ,
5527
location plastid } ,
5528
also-change-mrna FALSE ,
5534
match-text "Bacteria" ,
5535
match-location contains ,
5536
case-sensitive TRUE ,
5537
ignore-space FALSE ,
5538
ignore-punct FALSE ,
5542
is-all-lower FALSE ,
5543
is-all-punct FALSE ,
5544
ignore-weasel FALSE } ,
5545
type-constraint any } ,
5550
match-text "taxon:" ,
5551
match-location starts ,
5552
case-sensitive TRUE ,
5553
ignore-space FALSE ,
5554
ignore-punct FALSE ,
5558
is-all-lower FALSE ,
5559
is-all-punct FALSE ,
5560
ignore-weasel FALSE } ,
5561
type-constraint any } } } ,
5567
location mitochondrion } ,
5568
also-change-mrna FALSE ,
5574
match-text "Bacteria" ,
5575
match-location contains ,
5576
case-sensitive TRUE ,
5577
ignore-space FALSE ,
5578
ignore-punct FALSE ,
5582
is-all-lower FALSE ,
5583
is-all-punct FALSE ,
5584
ignore-weasel FALSE } ,
5585
type-constraint any } ,
5590
match-text "taxon:" ,
5591
match-location starts ,
5592
case-sensitive TRUE ,
5593
ignore-space FALSE ,
5594
ignore-punct FALSE ,
5598
is-all-lower FALSE ,
5599
is-all-punct FALSE ,
5600
ignore-weasel FALSE } ,
5601
type-constraint any } } } ,
5609
case-insensitive FALSE } ,
5612
textqual collected-by } ,
5613
also-change-mrna FALSE } ,
5621
case-insensitive FALSE } ,
5624
textqual identified-by } ,
5625
also-change-mrna FALSE } ,
5633
case-insensitive FALSE } ,
5636
textqual collected-by } ,
5637
also-change-mrna FALSE } ,
5645
case-insensitive FALSE } ,
5648
textqual identified-by } ,
5649
also-change-mrna FALSE } ,
5657
case-insensitive FALSE } ,
5660
textqual collected-by } ,
5661
also-change-mrna FALSE } ,
5669
case-insensitive FALSE } ,
5672
textqual identified-by } ,
5673
also-change-mrna FALSE } ,
5675
fix-type move-middle-to-first } ,
5680
find-txt "Polyprotein" ,
5681
repl-txt "polyprotein" ,
5683
case-insensitive TRUE } ,
5685
cds-gene-prot prot-name } ,
5686
also-change-mrna FALSE ,
5689
match-text "Polyprotein" ,
5690
match-location equals ,
5691
case-sensitive FALSE ,
5692
ignore-space FALSE ,
5697
is-all-lower FALSE ,
5698
is-all-punct FALSE ,
5699
ignore-weasel FALSE } } } ,
5704
find-txt "Control region" ,
5705
repl-txt "control region" ,
5707
case-insensitive TRUE } ,
5712
legal-qual note } } ,
5713
also-change-mrna FALSE ,
5716
match-text "Control region" ,
5717
match-location equals ,
5718
case-sensitive FALSE ,
5719
ignore-space FALSE ,
5724
is-all-lower FALSE ,
5725
is-all-punct FALSE ,
5726
ignore-weasel FALSE } } } ,
5732
type repeat-region ,
5734
legal-qual rpt-family ,
5736
legal-qual satellite } ,
5738
keep-original FALSE ,
5739
capitalization none ,
5740
existing-text leave-old } ,
5741
also-change-mrna FALSE ,
5746
type repeat-region ,
5748
legal-qual rpt-family } ,
5750
match-text "microsatellite" ,
5751
match-location contains ,
5752
case-sensitive FALSE ,
5753
ignore-space FALSE ,
5754
ignore-punct FALSE ,
5758
is-all-lower FALSE ,
5759
is-all-punct FALSE ,
5760
ignore-weasel FALSE } } } } ,
5763
type-to misc-feature ,
5764
leave-original FALSE ,
5765
src-feat-constraint {
5767
match-text "D-loop" ,
5768
match-location equals ,
5769
case-sensitive FALSE ,
5775
is-all-lower FALSE ,
5776
is-all-punct FALSE ,
5777
ignore-weasel FALSE } ,
5784
strandedness any } } } ,
5786
type-from misc-feature ,
5788
leave-original FALSE ,
5789
src-feat-constraint {
5791
match-text "D-loop" ,
5792
match-location equals ,
5793
case-sensitive FALSE ,
5799
is-all-lower FALSE ,
5800
is-all-punct FALSE ,
5801
ignore-weasel FALSE } ,
5805
feature misc-feature ,
5808
strandedness any } } } ,
213
match-text "control region" ,
214
match-location contains ,
215
case-sensitive TRUE ,
217
not-present FALSE } } } } ,
223
location mitochondrion ,
225
existing-text replace-old } ,
5816
legal-qual note } } ,
226
5817
also-change-mrna FALSE ,
235
match-text "control region" ,
236
match-location contains ,
237
case-sensitive TRUE ,
239
not-present FALSE } } } } ,
248
is-not-present NULL } } } } }
5820
match-text "D-loop" ,
5821
match-location equals ,
5822
case-sensitive FALSE ,
5828
is-all-lower FALSE ,
5829
is-all-punct FALSE ,
5830
ignore-weasel FALSE } } } }
added
removed
data/autofix.prt
