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Loki: MCMC linkage analysis on general pedigrees
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Some information about Loki from the Debian-Med project.
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Performs Markov chain Monte Carlo multipoint linkage analysis on large,
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complex pedigrees. The current package supports analyses on quantitative
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traits only, although this restriction will be lifted in later versions.
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Joint estimation of QTL number, position and effects uses Reversible Jump
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MCMC. It is also possible to perform affected only IBD sharing analyses.
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Homepage: http://loki.homeunix.net.
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You can get a good overview by the main manpage:
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It is suggested to install the loki-doc package.