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  • Committer: Bazaar Package Importer
  • Author(s): Barry deFreese
  • Date: 2006-07-19 23:28:07 UTC
  • mfrom: (1.1.5 upstream)
  • Revision ID: james.westby@ubuntu.com-20060719232807-et3cdmcjgmnyleyx
Tags: 6.1.20060507-3ubuntu1
Re-merge with Debian

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algo/blast/api/blast_api.h
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/* $Id: blast_api.h,v 1.5 2005/08/29 14:44:19 camacho Exp $
 
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/* $Id: blast_api.h,v 1.7 2006/01/13 15:58:31 madden Exp $
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***************************************************************************
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*                                                                         *
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*                             COPYRIGHT NOTICE                            *
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#include <algo/blast/api/blast_tabular.h>
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#include <algo/blast/api/blast_options_api.h>
 
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#include <algo/blast/api/blast_seqalign.h>
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/** @addtogroup CToolkitAlgoBlast
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 *
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 * @param masking_locs Locations in the queries that should be masked [in]
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 * @param options Search options [in]
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 * @param tf_data Structure to use for on-the-fly tabular formatting [in]
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 * @param seqalign_out All results in Seq-align form. [out]
 
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 * @param seqalign_arr object that holds the array of SeqAligns [out]
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 * @param filter_out Filtering locations [out]
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 * @param extra_returns Additional information about the search [out]
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 */
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                     SeqLoc* masking_locs,
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                     const SBlastOptions* options,
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                     BlastTabularFormatData* tf_data,
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                     SeqAlign **seqalign_out,
 
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                     SBlastSeqalignArray* *seqalign_arr,
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                     SeqLoc** filter_out,
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                     Blast_SummaryReturn* extra_returns);
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 * @param masking_locs Locations in the queries that should be masked [in]
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 * @param options Search options [in]
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 * @param tf_data Structure to use for on-the-fly tabular formatting [in]
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 * @param seqalign_out All results in Seq-align form. [out]
 
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 * @param seqalign_arr object that holds the array of SeqAligns [out]
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 * @param filter_out Filtering locations [out]
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 * @param extra_returns Additional information about the search [out]
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 */
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                            SeqLoc* masking_locs,
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                            const SBlastOptions* options,
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                            BlastTabularFormatData* tf_data,
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                            SeqAlign **seqalign_out,
 
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                            SBlastSeqalignArray* *seqalign_arr,
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                            SeqLoc** filter_out,
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                            Blast_SummaryReturn* extra_returns);
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