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  • Committer: Bazaar Package Importer
  • Author(s): Barry deFreese
  • Date: 2006-07-19 23:28:07 UTC
  • mfrom: (1.1.5 upstream)
  • Revision ID: james.westby@ubuntu.com-20060719232807-et3cdmcjgmnyleyx
Tags: 6.1.20060507-3ubuntu1
Re-merge with Debian

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tools/mbalign.c
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static char const rcsid[] = "$Id: mbalign.c,v 6.42 2005/05/03 20:29:17 papadopo Exp $";
 
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static char const rcsid[] = "$Id: mbalign.c,v 6.43 2006/02/02 17:57:34 papadopo Exp $";
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/* $Id: mbalign.c,v 6.42 2005/05/03 20:29:17 papadopo Exp $
 
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/* $Id: mbalign.c,v 6.43 2006/02/02 17:57:34 papadopo Exp $
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* ===========================================================================
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*
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*                            PUBLIC DOMAIN NOTICE
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*
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* Initial Creation Date: 10/27/1999
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*
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* $Revision: 6.42 $
 
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* $Revision: 6.43 $
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*
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* File Description:
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*        Alignment functions for Mega Blast program
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*
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* $Log: mbalign.c,v $
 
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* Revision 6.43  2006/02/02 17:57:34  papadopo
 
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* fix a rare bug computing greedy traceback
 
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*
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* Revision 6.42  2005/05/03 20:29:17  papadopo
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* remove use of ICEIL macro; use either a true integer ceiling or (quotient+1) as circumstances warrant
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*
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            if (state == sC) {
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                /* diag will not be changed*/
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                state = get_lastC(flast_d, lower, upper, &d, diag, Mis_cost, &row1);
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                if (row-row1 > 0) edit_script_rep(S, row-row1);
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                row = row1;
 
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                if (row-row1 > 0) {
 
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                   edit_script_rep(S, row-row1);
 
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                   row = row1;
 
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                }
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            } else {
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                if (state == sI) {
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                    /*row unchanged */