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Viewing changes to algo/blast/api/repeats_filter.c

  • Committer: Bazaar Package Importer
  • Author(s): Barry deFreese
  • Date: 2006-07-19 23:28:07 UTC
  • mfrom: (1.1.5 upstream)
  • Revision ID: james.westby@ubuntu.com-20060719232807-et3cdmcjgmnyleyx
Tags: 6.1.20060507-3ubuntu1
Re-merge with Debian

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algo/blast/api/repeats_filter.c
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static char const rcsid[] = "$Id: repeats_filter.c,v 1.12 2005/09/20 18:27:50 kans Exp $";
 
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static char const rcsid[] = "$Id: repeats_filter.c,v 1.14 2006/04/26 12:46:47 madden Exp $";
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/*
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 * ===========================================================================
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Int2
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Blast_FindRepeatFilterSeqLoc(SeqLoc* query_seqloc,
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                             const char* filter_string, 
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                             SeqLoc* *mask_loc)
 
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                             SeqLoc* *mask_loc,
 
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                             SBlastMessage **message)
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{
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    char* repeat_database = NULL;
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    SBlastOptions* options = NULL;
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    BlastHSPResults* results = NULL;
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    SBlastFilterOptions* filtering_options = NULL;
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    ASSERT(message);
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    if (filter_string == NULL)
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       return 0;
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    seq_src = ReaddbBlastSeqSrcInit(repeat_database, FALSE, 0, 0);
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    if (!seq_src) {
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        Blast_MessageWrite(&sum_returns->error, 2, 1, 0,  
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                           "Initialization of subject sequences source failed");
 
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        SBlastMessageWrite(&sum_returns->error, SEV_ERROR, 
 
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           "Initialization of subject sequences source failed", NULL, FALSE);
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    } else {
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        char* error_str = BlastSeqSrcGetInitError(seq_src);
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        if (error_str)
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            Blast_MessageWrite(&sum_returns->error, 2, 1, 0, error_str); 
 
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           SBlastMessageWrite(&sum_returns->error, SEV_ERROR, error_str, NULL, FALSE); 
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    }
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    /* If there was an error initializing the sequence source, return without 
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       doing the search. */
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    if (sum_returns->error) {
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        *mask_loc = NULL;
 
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        *message = sum_returns->error;
 
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        sum_returns->error = NULL;
 
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        Blast_SummaryReturnFree(sum_returns);
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        filtering_options = SBlastFilterOptionsFree(filtering_options);
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        return -1;
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    }