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  • Committer: Bazaar Package Importer
  • Author(s): Barry deFreese
  • Date: 2006-07-19 23:28:07 UTC
  • mfrom: (1.1.5 upstream)
  • Revision ID: james.westby@ubuntu.com-20060719232807-et3cdmcjgmnyleyx
Tags: 6.1.20060507-3ubuntu1
Re-merge with Debian

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api/asn2gnbi.h
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*
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* Version Creation Date:   12/30/03
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*
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* $Revision: 1.55 $
 
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* $Revision: 1.62 $
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*
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* File Description:  New GenBank flatfile generator, internal header
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*
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  Boolean             geneSynsToNote;
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  Boolean             refSeqQualsToNote;
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  Boolean             selenocysteineToNote;
 
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  Boolean             pyrrolysineToNote;
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  Boolean             extraProductsToNote;
 
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  Boolean             codonRecognizedToNote;
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  Boolean             forGbRelease;
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} Asn2gbFlags, PNTR Asn2gbFlagsPtr;
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  Int4            seqGapCurrLen;
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  ValNodePtr      gihead;
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  ValNodePtr      gitail;
 
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  TextFsaPtr      bad_html_fsa;
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} IntAsn2gbJob, PNTR IntAsn2gbJobPtr;
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/* array for assigning biosource and feature data fields to qualifiers */
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  Boolean          hideGeneFeats;
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  Boolean          newLocusLine;
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  Boolean          showBaseCount;
 
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  Boolean          forcePrimaryBlock;
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  Boolean          hideImpFeats;
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  Boolean          hideRemImpFeats;
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  Boolean          firstfeat;
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  Boolean          featseen;
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  Boolean          featjustseen;
 
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  Int4             localFeatCount;
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  ValNodePtr       wgsaccnlist;
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  Boolean          has_mat_peptide;
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  FTQUAL_prot_names,
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  FTQUAL_protein_id,
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  FTQUAL_pseudo,
 
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  FTQUAL_pyrrolysine,
 
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  FTQUAL_pyrrolysine_note,
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  FTQUAL_region,
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  FTQUAL_region_name,
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  FTQUAL_replace,
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  FTQUAL_trans_splicing,
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  FTQUAL_trna_aa,
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  FTQUAL_trna_codons,
 
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  FTQUAL_trna_codons_note,
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  FTQUAL_usedin,
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  FTQUAL_xtra_prod_quals,
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  ASN2GNBK_TOTAL_FEATUR
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NLM_EXTERN Char link_feat [MAX_WWWBUF];
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NLM_EXTERN Char link_featc [MAX_WWWBUF];
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NLM_EXTERN Char link_seq [MAX_WWWBUF];
 
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NLM_EXTERN Char link_projid [MAX_WWWBUF];
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NLM_EXTERN Char link_wgs [MAX_WWWBUF];
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NLM_EXTERN Char link_omim [MAX_WWWBUF];
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NLM_EXTERN Char ref_link [MAX_WWWBUF];
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NLM_EXTERN void FF_www_db_xref(
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  IntAsn2gbJobPtr ajp,
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  StringItemPtr ffstring,
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  CharPtr db, CharPtr identifier
 
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  CharPtr db,
 
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  CharPtr identifier,
 
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  BioseqPtr bsp
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);
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NLM_EXTERN Boolean StringIsJustQuotes (