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Viewing changes to algo/blast/core/phi_lookup.h

  • Committer: Bazaar Package Importer
  • Author(s): Barry deFreese
  • Date: 2006-07-19 23:28:07 UTC
  • mfrom: (1.1.5 upstream)
  • Revision ID: james.westby@ubuntu.com-20060719232807-et3cdmcjgmnyleyx
Tags: 6.1.20060507-3ubuntu1
Re-merge with Debian

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algo/blast/core/phi_lookup.h
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/* $Id: phi_lookup.h,v 1.10 2005/11/16 14:31:37 madden Exp $
 
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/* $Id: phi_lookup.h,v 1.11 2006/02/01 14:58:45 ivanov Exp $
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 * ===========================================================================
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 *
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 *                            PUBLIC DOMAIN NOTICE
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 * @param error_msg Error message, if any.
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 * @return 0 on success, -1 on failure.
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 */
 
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NCBI_XBLAST_EXPORT
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Int2 SPHIPatternSearchBlkNew(char* pattern, Boolean is_dna, BlastScoreBlk* sbp, 
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                            SPHIPatternSearchBlk* *pattern_blk, 
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                            Blast_Message* *error_msg);
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 * @param pattern_blk The structure to deallocate [in]
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 * @return NULL.
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 */
 
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NCBI_XBLAST_EXPORT
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SPHIPatternSearchBlk* 
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SPHIPatternSearchBlkFree(SPHIPatternSearchBlk* pattern_blk);
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 * @param array_size length of the offset arrays [in]
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 * @return The number of hits found.
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 */
 
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NCBI_XBLAST_EXPORT
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Int4 PHIBlastScanSubject(const LookupTableWrap* lookup_wrap,
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        const BLAST_SequenceBlk *query_blk, const BLAST_SequenceBlk *subject, 
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        Int4* offset, BlastOffsetPair* NCBI_RESTRICT offset_pairs,